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			lp="62,17.5",
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			pos="233,64",
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	annotate_cells	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 402.5 99.5 402.5 118.5 719.5 118.5 719.5 99.5 ",
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		pos="561,109",
		rects="402.5,99.5,719.5,118.5",
		width=4.4028];
	img_dir -> annotate_cells	[_draw_="c 7 -#000000 B 10 613.96 287.54 594.73 274.84 561 251.62 561 245 561 245 561 245 561 153 561 144.31 561 134.63 561 126.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 563.45 126.76 561 119.76 558.55 126.76 ",
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		label=img_dir,
		lp="576,199",
		pos="e,561,118.24 613.96,287.54 594.73,274.84 561,251.62 561,245 561,245 561,245 561,153 561,144.31 561,134.63 561,126.65"];
	"salmon-mouse"	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1106.5 189.5 1106.5 208.5 1313.5 208.5 1313.5 189.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1210 196.5 0 191 37 -Run Salmon Alevin tool on FASTQ input ",
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		pos="1210,199",
		rects="1106.5,189.5,1313.5,208.5",
		width=2.875];
	expected_cell_count -> "salmon-mouse"	[_draw_="c 7 -#000000 B 7 1001.38 287.67 1008.12 271.18 1022.75 235.79 1025 234 1039.09 222.82 1075.31 214.96 1112.01 209.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1112.24 212.08 1118.84 208.69 1111.57 207.23 ",
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		label=expected_cell_count,
		lp="1066.5,244",
		pos="e,1120.3,208.48 1001.4,287.67 1008.1,271.18 1022.7,235.79 1025,234 1039.1,222.82 1075.3,214.96 1112,209.64"];
	salmon	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 895.5 189.5 895.5 208.5 1102.5 208.5 1102.5 189.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 999 196.5 0 191 37 -Run Salmon Alevin tool on FASTQ input ",
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		pos="999,199",
		rects="895.5,189.5,1102.5,208.5",
		width=2.875];
	expected_cell_count -> salmon	[_draw_="c 7 -#000000 B 7 977.71 287.66 954.52 276.83 921.4 256.62 935 234 940.95 224.11 950.85 216.94 961.11 211.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 961.84 214.17 967.21 209.05 959.82 209.7 ",
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		label=expected_cell_count,
		lp="976.5,244",
		pos="e,968.59,208.43 977.71,287.66 954.52,276.83 921.4,256.62 935,234 940.95,224.11 950.85,216.94 961.11,211.81"];
	fastq_dir -> "salmon-mouse"	[_draw_="c 7 -#000000 B 13 753.39 287.59 758.65 282.81 765.28 276.66 771 271 787.09 255.08 786.3 245.15 806 234 836.5 216.73 848.24 221.43 \
883 217 977.5 204.95 1003.95 214.35 1102.99 208.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1102.84 211.42 1109.68 208.57 1102.55 206.53 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 836 242.1 0 60 15 -orig_fastq_dirs ",
		label=orig_fastq_dirs,
		lp="836,244",
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	adjust_barcodes	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 272.5 287.5 272.5 306.5 497.5 306.5 497.5 287.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 385 294.5 0 209 42 -Assay-specific adjustment of cell barcodes ",
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		label="Assay-specific adjustment of cell barcodes",
		pos="385,297",
		rects="272.5,287.5,497.5,306.5",
		width=3.125];
	fastq_dir -> adjust_barcodes	[_draw_="c 7 -#000000 B 10 733.31 306.35 717.35 319.61 685.76 343.28 654 352.25 590.27 370.25 569.69 366.43 505 352.25 468.77 344.31 430.43 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 408.36 308.63 401.09 307.15 405.85 312.84 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 614 363.6 0 36 9 -fastq_dir ",
		label=fastq_dir,
		lp="614,365.5",
		pos="e,399.79,306.38 733.31,306.35 717.35,319.61 685.76,343.28 654,352.25 590.27,370.25 569.69,366.43 505,352.25 468.77,344.31 430.43,\
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	fastq_dir -> salmon	[_draw_="c 7 -#000000 B 13 699.29 287.51 665.57 280.08 623.42 268.28 613 254 607.76 246.82 608.64 241.75 613 234 632.93 198.58 738.92 215.48 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 887.15 210.23 893.99 207.37 886.86 205.34 ",
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		label=orig_fastq_dirs,
		lp="643,244",
		pos="e,895.5,207.28 699.29,287.51 665.57,280.08 623.42,268.28 613,254 607.76,246.82 608.64,241.75 613,234 632.93,198.58 738.92,215.48 \
865,209 872.27,208.63 879.75,208.21 887.3,207.77"];
	trim_reads	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 674.5 234.5 674.5 253.5 769.5 253.5 769.5 234.5 ",
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		height=0.27778,
		label="Trim FASTQ files",
		pos="722,244",
		rects="674.5,234.5,769.5,253.5",
		width=1.3194];
	fastq_dir -> trim_reads	[_draw_="c 7 -#000000 B 7 729.26 287.7 723.37 283.52 717.22 277.88 714 271 712.55 267.91 712.56 264.5 713.31 261.19 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 715.53 262.24 715.78 254.83 710.96 260.47 ",
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		label=orig_fastq_dirs,
		lp="744,266.5",
		pos="e,716.33,253.42 729.26,287.7 723.37,283.52 717.22,277.88 714,271 712.55,267.91 712.56,264.5 713.31,261.19"];
	fastq_dir -> annotate_cells	[_draw_="c 7 -#000000 B 13 699.37 287.54 665.97 281.1 625.47 273.01 622 271 608.64 263.28 599 260.43 599 245 599 245 599 245 599 153 599 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 583.4 121.55 576.35 119.25 580.42 125.45 ",
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		label=orig_fastq_dirs,
		lp="629,199",
		pos="e,575.15,118.33 699.37,287.54 665.97,281.1 625.47,273.01 622,271 608.64,263.28 599,260.43 599,245 599,245 599,245 599,153 599,141.09 \
590.72,130.93 581.88,123.48"];
	assay -> "salmon-mouse"	[_draw_="c 7 -#000000 B 7 887.43 287.67 892.28 271.17 902.87 235.77 905 234 912.74 227.58 1017.42 216.9 1102.02 209.23 ",
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		label=assay,
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	alevin_to_anndata	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 829 144.5 829 163.5 1191 163.5 1191 144.5 ",
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		height=0.27778,
		label="Convert Alevin sparse output to anndata.AnnData object, save as h5ad",
		pos="1010,154",
		rects="829,144.5,1191,163.5",
		width=5.0278];
	assay -> alevin_to_anndata	[_draw_="c 7 -#000000 B 7 884.62 287.71 883.78 265.26 882.67 203.99 895 189 903.43 178.75 914.8 171.49 927.12 166.38 ",
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		label=assay,
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	assay -> adjust_barcodes	[_draw_="c 7 -#000000 B 10 879.43 306.24 870.91 319.37 853.25 342.88 831 352.25 764.23 380.36 575.77 367.76 505 352.25 468.77 344.31 430.43 \
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		label=assay,
		lp="557,365.5",
		pos="e,399.79,306.38 879.43,306.24 870.91,319.37 853.25,342.88 831,352.25 764.23,380.36 575.77,367.76 505,352.25 468.77,344.31 430.43,\
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	assay -> salmon	[_draw_="c 7 -#000000 B 10 880.74 287.58 876.8 279.28 871.23 266.12 869 254 865.82 236.71 867.69 225.64 883 217 887.74 214.32 895.57 212.02 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 905.34 212.49 911.76 208.77 904.42 207.67 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 881.5 242.1 0 25 5 -assay ",
		label=assay,
		lp="881.5,244",
		pos="e,913.24,208.49 880.74,287.58 876.8,279.28 871.23,266.12 869,254 865.82,236.71 867.69,225.64 883,217 887.74,214.32 895.57,212.02 \
904.99,210.06"];
	assay -> trim_reads	[_draw_="c 7 -#000000 B 7 858.09 287.51 849.44 284.79 839.82 281.76 831 279 806.18 271.22 778.16 262.48 756.75 255.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 757.74 253.56 750.33 253.81 756.28 258.23 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 816.5 264.6 0 25 5 -assay ",
		label=assay,
		lp="816.5,266.5",
		pos="e,748.88,253.36 858.09,287.51 849.44,284.79 839.82,281.76 831,279 806.18,271.22 778.16,262.48 756.75,255.81"];
	assay -> annotate_cells	[_draw_="c 7 -#000000 B 7 879.56 287.83 869.51 272.91 848.15 242.07 838 234 763.89 175.1 657.37 137.8 600.43 120.79 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 601.26 118.48 593.85 118.86 599.88 123.18 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 814.5 197.1 0 25 5 -assay ",
		label=assay,
		lp="814.5,199",
		pos="e,592.4,118.43 879.56,287.83 869.51,272.91 848.15,242.07 838,234 763.89,175.1 657.37,137.8 600.43,120.79"];
	metadata_dir -> annotate_cells	[_draw_="c 7 -#000000 B 10 534.42 287.58 518.09 279.38 498 265.18 498 245 498 245 498 245 498 153 498 138.47 509.57 128.5 522.79 121.85 ",
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		label=metadata_dir,
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	organism -> "salmon-mouse"	[_draw_="c 7 -#000000 B 10 1370.63 287.52 1369.67 274.71 1366.23 250.22 1354 234 1345.23 222.38 1339.7 221.93 1326 217 1318.67 214.36 1310.95 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1383.5 242.1 0 39 8 -organism ",
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	organism -> alevin_to_anndata	[_draw_="c 7 -#000000 B 7 1396.03 287.57 1423.45 276.95 1461.5 257.23 1445 234 1415.9 193.03 1302.74 173.3 1199.14 163.8 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1456.5 219.6 0 39 8 -organism ",
		label=organism,
		lp="1456.5,221.5",
		pos="e,1190.7,163.06 1396,287.57 1423.5,276.95 1461.5,257.23 1445,234 1415.9,193.03 1302.7,173.3 1199.1,163.8"];
	organism -> salmon	[_draw_="c 7 -#000000 B 7 1380.3 287.91 1393.83 275.18 1415.81 250.27 1401 234 1380.14 211.08 1165.21 211.39 1108.62 208.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1109.1 206.52 1101.97 208.58 1108.83 211.42 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1424.5 242.1 0 39 8 -organism ",
		label=organism,
		lp="1424.5,244",
		pos="e,1100.5,208.49 1380.3,287.91 1393.8,275.18 1415.8,250.27 1401,234 1380.1,211.08 1165.2,211.39 1108.6,208.95"];
	threads -> "salmon-mouse"	[_draw_="c 7 -#000000 B 7 1260.71 287.88 1270.02 275.54 1284.6 251.64 1274 234 1268.05 224.11 1258.15 216.94 1247.89 211.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1249.18 209.7 1241.79 209.05 1247.16 214.17 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1293 242.1 0 32 7 -threads ",
		label=threads,
		lp="1293,244",
		pos="e,1240.4,208.43 1260.7,287.88 1270,275.54 1284.6,251.64 1274,234 1268.1,224.11 1258.2,216.94 1247.9,211.81"];
	threads -> salmon	[_draw_="c 7 -#000000 B 7 1271.23 287.59 1293.43 275.69 1327.23 253.23 1310 234 1306.41 229.99 1187.97 217.91 1098.32 209.29 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1098.73 206.86 1091.52 208.63 1098.26 211.74 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1330 242.1 0 32 7 -threads ",
		label=threads,
		lp="1330,244",
		pos="e,1090,208.49 1271.2,287.59 1293.4,275.69 1327.2,253.23 1310,234 1306.4,229.99 1188,217.91 1098.3,209.29"];
	threads -> trim_reads	[_draw_="c 7 -#000000 B 7 1216.92 287.56 1201.82 284.41 1184.15 281.1 1168 279 996.72 256.74 949.72 273.99 777.59 254.37 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 778.04 251.96 770.8 253.58 777.47 256.82 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1109 264.6 0 32 7 -threads ",
		label=threads,
		lp="1109,266.5",
		pos="e,769.3,253.41 1216.9,287.56 1201.8,284.41 1184.1,281.1 1168,279 996.72,256.74 949.72,273.99 777.59,254.37"];
	keep_all_barcodes -> "salmon-mouse"	[_draw_="c 7 -#000000 B 7 1111.79 287.84 1108.84 275.01 1105.25 249.97 1117 234 1124.61 223.66 1135.68 216.46 1147.56 211.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1148.36 213.77 1154.04 209 1146.62 209.19 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1155 242.1 0 76 17 -keep_all_barcodes ",
		label=keep_all_barcodes,
		lp="1155,244",
		pos="e,1155.5,208.46 1111.8,287.84 1108.8,275.01 1105.2,249.97 1117,234 1124.6,223.66 1135.7,216.46 1147.6,211.45"];
	keep_all_barcodes -> salmon	[_draw_="c 7 -#000000 B 7 1139.5 287.51 1168.27 276.6 1208.75 256.39 1190 234 1182.64 225.21 1129.1 216.16 1080.58 209.6 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1080.98 207.19 1073.72 208.69 1080.33 212.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1232 242.1 0 76 17 -keep_all_barcodes ",
		label=keep_all_barcodes,
		lp="1232,244",
		pos="e,1072.2,208.49 1139.5,287.51 1168.3,276.6 1208.8,256.39 1190,234 1182.6,225.21 1129.1,216.16 1080.6,209.6"];
	"salmon-mouse" -> salmon_output	[_draw_="c 7 -#000000 B 4 1213 189.68 1220.81 168.03 1241.88 109.67 1252.18 81.14 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1254.41 82.16 1254.48 74.74 1249.8 80.49 ",
		pos="e,1255,73.317 1213,189.68 1220.8,168.03 1241.9,109.67 1252.2,81.139"];
	"salmon-mouse" -> alevin_to_anndata	[_draw_="c 7 -#000000 B 4 1170.49 189.5 1138.03 182.53 1091.95 172.62 1057.48 165.21 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1058.27 162.87 1050.91 163.8 1057.24 167.66 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1147 174.6 0 40 10 -alevin_dir ",
		label=alevin_dir,
		lp="1147,176.5",
		pos="e,1049.4,163.48 1170.5,189.5 1138,182.53 1091.9,172.62 1057.5,165.21"];
	alevin_to_anndata -> raw_count_matrix	[_draw_="c 7 -#000000 B 7 987.17 144.59 972.38 139.26 952.66 132.39 935 127 869.02 106.85 791.45 87.05 744.28 75.44 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 744.97 73.08 737.59 73.8 743.8 77.84 ",
		pos="e,736.12,73.435 987.17,144.59 972.38,139.26 952.66,132.39 935,127 869.02,106.85 791.45,87.053 744.28,75.437"];
	alevin_to_anndata -> genome_build_json	[_draw_="c 7 -#000000 B 4 1014.99 144.56 1023.71 129.81 1041.84 99.11 1052.86 80.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1054.88 81.86 1056.34 74.59 1050.66 79.37 ",
		pos="e,1057.1,73.284 1015,144.56 1023.7,129.81 1041.8,99.114 1052.9,80.46"];
	alevin_to_anndata -> annotate_cells	[_draw_="c 7 -#000000 B 7 957.78 144.54 921.02 138.85 870.61 131.58 826 127 794.19 123.74 760.15 120.99 727.44 118.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 727.82 116.3 720.67 118.27 727.49 121.19 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 915 129.6 0 38 9 -h5ad_file ",
		label=h5ad_file,
		lp="915,131.5",
		pos="e,719.16,118.16 957.78,144.54 921.02,138.85 870.61,131.58 826,127 794.19,123.74 760.15,120.99 727.44,118.73"];
	adjust_barcodes -> trim_reads	[_draw_="c 7 -#000000 B 4 444.02 287.54 510.74 277.94 616.19 262.65 666.36 254.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 666.48 257.19 673.01 253.67 665.71 252.35 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 642 264.6 0 52 13 -adj_fastq_dir ",
		label=adj_fastq_dir,
		lp="642,266.5",
		pos="e,674.5,253.43 444.02,287.54 510.74,277.94 616.19,262.65 666.36,254.73"];
	adjust_barcodes -> annotate_cells	[_draw_="c 7 -#000000 B 10 387.89 287.81 391.15 277.84 396 260.4 396 245 396 245 396 245 396 153 396 136.49 427.34 126.2 462.7 119.85 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 462.79 122.32 469.28 118.73 461.97 117.49 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 426.5 197.1 0 61 13 -metadata_json ",
		label=metadata_json,
		lp="426.5,199",
		pos="e,470.78,118.47 387.89,287.81 391.15,277.84 396,260.4 396,245 396,245 396,245 396,153 396,136.49 427.34,126.2 462.7,119.85"];
	salmon -> salmon_output	[_draw_="c 7 -#000000 B 7 1083.92 189.52 1126.69 183.96 1173.18 175.56 1191 164 1199.28 158.63 1232.25 106.58 1248.64 80.19 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1250.58 81.72 1252.18 74.48 1246.41 79.14 ",
		pos="e,1253,73.189 1083.9,189.52 1126.7,183.96 1173.2,175.56 1191,164 1199.3,158.63 1232.2,106.58 1248.6,80.185"];
	salmon -> alevin_to_anndata	[_draw_="c 7 -#000000 B 4 1001.12 189.71 1002.46 184.47 1004.24 177.53 1005.85 171.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1008.15 172.12 1007.51 164.73 1003.4 170.91 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1025 174.6 0 40 10 -alevin_dir ",
		label=alevin_dir,
		lp="1025,176.5",
		pos="e,1007.9,163.27 1001.1,189.71 1002.5,184.47 1004.2,177.53 1005.8,171.24"];
	trim_reads -> "salmon-mouse"	[_draw_="c 7 -#000000 B 10 720.77 234.67 720.43 228.81 721.12 221.27 726 217 733.88 210.1 1092.54 209.55 1103 209 1103.19 208.99 1103.37 \
208.98 1103.56 208.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1103.7 211.42 1110.54 208.57 1103.42 206.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 762.5 219.6 0 73 17 -trimmed_fastq_dir ",
		label=trimmed_fastq_dir,
		lp="762.5,221.5",
		pos="e,1112.1,208.49 720.77,234.67 720.43,228.81 721.12,221.27 726,217 733.88,210.1 1092.5,209.55 1103,209 1103.2,208.99 1103.4,208.98 \
1103.6,208.97"];
	trim_reads -> salmon	[_draw_="c 7 -#000000 B 13 677.77 234.53 660.84 231.08 645.24 227.54 644 226 641.49 222.88 641.22 219.88 644 217 652.53 208.16 852.73 209.63 \
865 209 872.27 208.62 879.75 208.21 887.3 207.76 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 887.15 210.23 893.99 207.36 886.86 205.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 680.5 219.6 0 73 17 -trimmed_fastq_dir ",
		label=trimmed_fastq_dir,
		lp="680.5,221.5",
		pos="e,895.5,207.27 677.77,234.53 660.84,231.08 645.24,227.54 644,226 641.49,222.88 641.22,219.88 644,217 652.53,208.16 852.73,209.63 \
865,209 872.27,208.62 879.75,208.21 887.3,207.76"];
	annotate_cells -> count_matrix_h5ad	[_draw_="c 7 -#000000 B 4 496.2 99.5 441.39 92.32 362.91 82.03 305.91 74.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 306.43 72.16 299.17 73.67 305.79 77.01 ",
		pos="e,297.67,73.478 496.2,99.505 441.39,92.319 362.91,82.03 305.91,74.559"];
}