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		label=max_uncalled,
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		pos="e,1184.8,187.24 1380.7,223.57 1368.4,220.5 1354.1,217.24 1341,215 1307.1,209.2 1296.3,218.94 1264,207 1257.4,204.56 1257.6,200.4 \
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	kallisto_index -> kallisto	[_draw_="c 7 -#000000 B 13 293.36 223.59 301.45 220.41 311.04 217.07 320 215 394.42 197.85 414.95 205.06 491 198 722.86 176.48 780.92 172.09 \
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		label=kallisto_index,
		lp="832.5,180",
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	trimming_adapter_trim_end -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 7 842.83 223.59 866.32 215.91 902.7 204.76 935 198 948.5 195.17 962.9 192.73 977.01 190.65 ",
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		label=adapter_trim_end,
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	trimming_adapters -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 7 971.96 223.54 986.72 216.61 1008.18 206.59 1027 198 1030.67 196.32 1034.55 194.57 1038.36 192.86 ",
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		label=adapters,
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	secondstrand -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 1506.56 223.56 1498.56 220.3 1488.99 216.89 1480 215 1447.55 208.17 1362.37 217.73 1331 207 1324.35 204.73 1324.63 \
200.32 1318 198 1294.77 189.88 1243.6 185.61 1193.31 183.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1193.53 180.93 1186.43 183.09 1193.32 185.83 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1359.5 200.6 0 57 12 -secondstrand ",
		label=secondstrand,
		lp="1359.5,202.5",
		pos="e,1184.9,183.02 1506.6,223.56 1498.6,220.3 1489,216.89 1480,215 1447.6,208.17 1362.4,217.73 1331,207 1324.4,204.73 1324.6,200.32 \
1318,198 1294.8,189.88 1243.6,185.61 1193.3,183.38"];
	secondstrand -> kallisto	[_draw_="c 7 -#000000 B 13 1506.08 223.58 1498.16 220.4 1488.78 217.05 1480 215 1444.78 206.76 1433.17 218.89 1399 207 1392.01 204.57 1391.58 \
201.39 1385 198 1344.39 177.07 1295.02 158.41 1263.08 147.15 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1264.19 144.95 1256.78 144.96 1262.58 149.58 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1394.5 178.1 0 57 12 -secondstrand ",
		label=secondstrand,
		lp="1394.5,180",
		pos="e,1255.3,144.46 1506.1,223.58 1498.2,220.4 1488.8,217.05 1480,215 1444.8,206.76 1433.2,218.89 1399,207 1392,204.57 1391.6,201.39 \
1385,198 1344.4,177.07 1295,158.41 1263.1,147.15"];
	sample_name -> stringtie	[_draw_="c 7 -#000000 B 10 80.34 223.66 88.32 220.7 97.51 217.5 106 215 277.9 164.43 323.13 159.34 499 125 558.86 113.31 628.86 102.56 671.03 \
96.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 671.26 98.84 677.83 95.4 670.55 93.99 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 381 155.6 0 58 11 -sample_name ",
		label=sample_name,
		lp="381,157.5",
		pos="e,679.33,95.186 80.344,223.66 88.323,220.7 97.509,217.5 106,215 277.9,164.43 323.13,159.34 499,125 558.86,113.31 628.86,102.56 671.03,\
96.394"];
	trimming_min_readlength -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 7 421.79 223.54 452.03 215.37 500.35 203.45 543 198 616.16 188.66 807.13 184.32 936.64 182.41 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 936.6 184.86 943.56 182.3 936.53 179.96 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 575 200.6 0 64 14 -min_readlength ",
		label=min_readlength,
		lp="575,202.5",
		pos="e,945.08,182.28 421.79,223.54 452.03,215.37 500.35,203.45 543,198 616.16,188.66 807.13,184.32 936.64,182.41"];
	reference_index -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 10 537.78 223.54 546.78 220.47 557.28 217.21 567 215 623.39 202.18 638.4 203.11 696 198 775.96 190.9 865.95 186.68 \
937.04 184.22 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 936.75 186.68 943.66 184 936.58 181.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 729 200.6 0 66 15 -reference_index ",
		label=reference_index,
		lp="729,202.5",
		pos="e,945.18,183.94 537.78,223.54 546.78,220.47 557.28,217.21 567,215 623.39,202.18 638.4,203.11 696,198 775.96,190.9 865.95,186.68 \
937.04,184.22"];
	read_group_fields -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 4 1065 223.58 1065 216.52 1065 206.24 1065 197.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1067.45 197.78 1065 190.78 1062.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1101.5 200.6 0 73 17 -read_group_fields ",
		label=read_group_fields,
		lp="1101.5,202.5",
		pos="e,1065,189.26 1065,223.58 1065,216.52 1065,206.24 1065,197.55"];
	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 924 125.5 924 144.5 1034 144.5 1034 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 979 132.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="979,135",
		rects="924,125.5,1034,144.5",
		width=1.5278];
	bam_to_trimmed_fastq_and_hisat_alignments -> merge	[_draw_="c 7 -#000000 B 4 1048.01 170.5 1035.29 164.14 1017.7 155.35 1003.47 148.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1004.67 146.09 997.31 145.15 1002.47 150.48 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1040.5 155.6 0 23 4 -bams ",
		label=bams,
		lp="1040.5,157.5",
		pos="e,995.96,144.48 1048,170.5 1035.3,164.14 1017.7,155.35 1003.5,148.23"];
	bam_to_trimmed_fastq_and_hisat_alignments -> kallisto	[_draw_="c 7 -#000000 B 4 1097.6 170.5 1123.93 163.64 1161.12 153.95 1189.38 146.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1189.85 149 1196 144.86 1188.61 144.25 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1175 155.6 0 26 6 -fastqs ",
		label=fastqs,
		lp="1175,157.5",
		pos="e,1197.5,144.48 1097.6,170.5 1123.9,163.64 1161.1,153.95 1189.4,146.59"];
	index_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 933 80.5 933 99.5 1025 99.5 1025 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 979 87.5 0 76 14 -samtools index ",
		height=0.27778,
		label="samtools index",
		pos="979,90",
		rects="933,80.5,1025,99.5",
		width=1.2778];
	index_bam -> final_bam	[_draw_="c 7 -#000000 B 4 979 80.71 979 75.59 979 68.85 979 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 981.45 62.78 979 55.78 976.55 62.78 ",
		pos="e,979,54.265 979,80.709 979,75.593 979,68.848 979,62.666"];
	stringtie -> stringtie_transcript_gtf	[_draw_="c 7 -#000000 B 4 709 80.71 709 75.59 709 68.85 709 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 711.45 62.78 709 55.78 706.55 62.78 ",
		pos="e,709,54.265 709,80.709 709,75.593 709,68.848 709,62.666"];
	stringtie -> stringtie_gene_expression_tsv	[_draw_="c 7 -#000000 B 4 738.83 80.5 762.72 73.7 796.38 64.12 822.16 56.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 822.71 59.17 828.77 54.89 821.37 54.45 ",
		pos="e,830.23,54.478 738.83,80.505 762.72,73.702 796.38,64.118 822.16,56.776"];
	merge -> index_bam	[_draw_="c 7 -#000000 B 4 979 125.71 979 120.59 979 113.85 979 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 981.45 107.78 979 100.78 976.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 988.5 110.6 0 19 3 -bam ",
		label=bam,
		lp="988.5,112.5",
		pos="e,979,99.265 979,125.71 979,120.59 979,113.85 979,107.67"];
	merge -> stringtie	[_draw_="c 7 -#000000 B 4 925.66 125.5 872.99 117.12 793.77 104.5 747.14 97.07 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 747.61 94.67 740.32 95.99 746.84 99.51 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 877.5 110.6 0 19 3 -bam ",
		label=bam,
		lp="877.5,112.5",
		pos="e,738.82,95.749 925.66,125.5 872.99,117.12 793.77,104.5 747.14,97.074"];
	transcript_to_gene -> gene_abundance	[_draw_="c 7 -#000000 B 4 1355 80.71 1355 75.59 1355 68.85 1355 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1357.45 62.78 1355 55.78 1352.55 62.78 ",
		pos="e,1355,54.265 1355,80.709 1355,75.593 1355,68.848 1355,62.666"];
	kallisto -> transcript_abundance_tsv	[_draw_="c 7 -#000000 B 4 1230 125.56 1230 111.14 1230 81.48 1230 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1232.45 62.8 1230 55.8 1227.55 62.8 ",
		pos="e,1230,54.284 1230,125.56 1230,111.14 1230,81.476 1230,62.727"];
	kallisto -> transcript_abundance_h5	[_draw_="c 7 -#000000 B 4 1216.1 125.56 1190.48 110.02 1135.72 76.78 1105.71 58.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1107.2 56.61 1099.94 55.07 1104.66 60.8 ",
		pos="e,1098.6,54.284 1216.1,125.56 1190.5,110.02 1135.7,76.78 1105.7,58.57"];
	kallisto -> transcript_to_gene	[_draw_="c 7 -#000000 B 4 1254.7 125.5 1274.13 118.82 1301.37 109.45 1322.56 102.16 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1323.1 104.56 1328.92 99.97 1321.51 99.93 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1342.5 110.6 0 79 19 -transcript_table_h5 ",
		label=transcript_table_h5,
		lp="1342.5,112.5",
		pos="e,1330.4,99.478 1254.7,125.5 1274.1,118.82 1301.4,109.45 1322.6,102.16"];
}