digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 458 571 458 571 0 ",
		bb="0,0,571,458",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 174 395 174 450 492 450 492 395 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 224 438 0 84 15 -Workflow Inputs ",
			bb="174,395,492,450",
			label="Workflow Inputs",
			lheight=0.15,
			lp="224,440.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 420.5 403.5 420.5 422.5 483.5 422.5 483.5 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 452 410.5 0 47 9 -reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference,
			pos="452,413",
			rects="420.5,403.5,483.5,422.5",
			width=0.875];
		normal_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 182 403.5 182 422.5 260 422.5 260 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 221 410.5 0 62 10 -normal_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_bam,
			pos="221,413",
			rects="182,403.5,260,422.5",
			width=1.0833];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 264.5 403.5 264.5 422.5 337.5 422.5 337.5 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 301 410.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="301,413",
			rects="264.5,403.5,337.5,422.5",
			width=1.0139];
		interval_list	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 342 403.5 342 422.5 416 422.5 416 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 379 410.5 0 58 13 -interval_list ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=interval_list,
			pos="379,413",
			rects="342,403.5,416,422.5",
			width=1.0278];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 217 8 217 63 401 63 401 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 271 15 0 92 16 -Workflow Outputs ",
			bb="217,8,401,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="271,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		snvs	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 353.5 35.5 353.5 54.5 392.5 54.5 392.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 373 42.5 0 23 4 -snvs ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=snvs,
			pos="373,45",
			rects="353.5,35.5,392.5,54.5",
			width=0.54167];
		indels	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 225 35.5 225 54.5 271 54.5 271 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 248 42.5 0 30 6 -indels ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=indels,
			pos="248,45",
			rects="225,35.5,271,54.5",
			width=0.63889];
		merged_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 275 35.5 275 54.5 349 54.5 349 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 312 42.5 0 58 10 -merged_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=merged_vcf,
			pos="312,45",
			rects="275,35.5,349,54.5",
			width=1.0278];
	}
	varscan	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 213 305.5 213 324.5 357 324.5 357 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 285 312.5 0 128 24 -varscan somatic workflow ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="varscan somatic workflow",
		pos="285,315",
		rects="213,305.5,357,324.5",
		width=2];
	reference -> varscan	[_draw_="c 7 -#000000 B 7 449.77 403.73 445.56 388.64 436.12 357.54 428 350 416.88 339.68 385.25 331.62 354.56 325.93 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 355.18 323.56 347.86 324.73 354.32 328.38 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 458 358.1 0 40 9 -reference ",
		label=reference,
		lp="458,360",
		pos="e,346.37,324.47 449.77,403.73 445.56,388.64 436.12,357.54 428,350 416.88,339.68 385.25,331.62 354.56,325.93"];
	merge_snvs	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 394.5 215.5 394.5 234.5 501.5 234.5 501.5 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 448 222.5 0 91 19 -create filtered VCF ",
		height=0.27778,
		label="create filtered VCF",
		pos="448,225",
		rects="394.5,215.5,501.5,234.5",
		width=1.4861];
	reference -> merge_snvs	[_draw_="c 7 -#000000 B 10 483.22 405.05 505.3 398.07 531 384.83 531 361 531 361 531 361 531 269 531 253.66 519.68 243.79 505.41 237.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 506.54 235.24 499.13 234.97 504.75 239.81 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 551 313.1 0 40 9 -reference ",
		label=reference,
		lp="551,315",
		pos="e,497.72,234.42 483.22,405.05 505.3,398.07 531,384.83 531,361 531,361 531,361 531,269 531,253.66 519.68,243.79 505.41,237.43"];
	merge_indels	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 142.5 215.5 142.5 234.5 249.5 234.5 249.5 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 196 222.5 0 91 19 -create filtered VCF ",
		height=0.27778,
		label="create filtered VCF",
		pos="196,225",
		rects="142.5,215.5,249.5,234.5",
		width=1.4861];
	reference -> merge_indels	[_draw_="c 7 -#000000 B 13 461.13 403.56 470.28 394.14 483 377.99 483 361 483 361 483 361 483 269 483 248.34 459.97 249.15 433 243 374.57 \
229.68 306.13 226.01 257.86 225.32 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 257.93 222.87 250.91 225.24 257.88 227.77 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 503 313.1 0 40 9 -reference ",
		label=reference,
		lp="503,315",
		pos="e,249.39,225.22 461.13,403.56 470.28,394.14 483,377.99 483,361 483,361 483,361 483,269 483,248.34 459.97,249.15 433,243 374.57,229.68 \
306.13,226.01 257.86,225.32"];
	normal_bam -> varscan	[_draw_="c 7 -#000000 B 7 219.74 403.61 218.29 390.92 217.32 366.57 228 350 234.07 340.59 243.75 333.42 253.42 328.15 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 254.24 330.48 259.41 325.16 252.05 326.1 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 253.5 358.1 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="253.5,360",
		pos="e,260.76,324.48 219.74,403.61 218.29,390.92 217.32,366.57 228,350 234.07,340.59 243.75,333.42 253.42,328.15"];
	tumor_bam -> varscan	[_draw_="c 7 -#000000 B 7 295.95 403.68 291.28 395.46 284.67 382.36 282 370 279.31 357.52 280.32 343.07 281.86 332.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 284.23 332.96 282.96 325.65 279.4 332.15 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 305 358.1 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="305,360",
		pos="e,283.21,324.16 295.95,403.68 291.28,395.46 284.67,382.36 282,370 279.31,357.52 280.32,343.07 281.86,332.26"];
	intervals_to_bed	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 330 350.5 330 369.5 428 369.5 428 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 379 357.5 0 82 16 -intervals_to_bed ",
		height=0.27778,
		label=intervals_to_bed,
		pos="379,360",
		rects="330,350.5,428,369.5",
		width=1.3611];
	interval_list -> intervals_to_bed	[_draw_="c 7 -#000000 B 4 379 403.58 379 396.52 379 386.24 379 377.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 381.45 377.78 379 370.78 376.55 377.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 402.5 380.6 0 47 13 -interval_list ",
		label=interval_list,
		lp="402.5,382.5",
		pos="e,379,369.26 379,403.58 379,396.52 379,386.24 379,377.55"];
	bgzip_and_index_hc_indels	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 0 260.5 0 279.5 116 279.5 116 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 58 267.5 0 100 19 -bgzip and index VCF ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="bgzip and index VCF",
		pos="58,270",
		rects="0,260.5,116,279.5",
		width=1.6111];
	varscan -> bgzip_and_index_hc_indels	[_draw_="c 7 -#000000 B 4 240.15 305.5 203 298.47 150.12 288.45 110.91 281.02 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 111.58 278.66 104.24 279.76 110.66 283.47 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 198.5 290.6 0 13 3 -vcf ",
		label=vcf,
		lp="198.5,292.5",
		pos="e,102.75,279.48 240.15,305.5 203,298.47 150.12,288.45 110.91,281.02"];
	bgzip_and_index_snvs	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 360 260.5 360 279.5 476 279.5 476 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 418 267.5 0 100 19 -bgzip and index VCF ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="bgzip and index VCF",
		pos="418,270",
		rects="360,260.5,476,279.5",
		width=1.6111];
	varscan -> bgzip_and_index_snvs	[_draw_="c 7 -#000000 B 4 311.28 305.5 332.04 298.79 361.19 289.37 383.78 282.06 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 384.43 284.43 390.34 279.94 382.92 279.77 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 369.5 290.6 0 13 3 -vcf ",
		label=vcf,
		lp="369.5,292.5",
		pos="e,391.78,279.48 311.28,305.5 332.04,298.79 361.19,289.37 383.78,282.06"];
	bgzip_and_index_hc_snvs	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 240 260.5 240 279.5 356 279.5 356 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 298 267.5 0 100 19 -bgzip and index VCF ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="bgzip and index VCF",
		pos="298,270",
		rects="240,260.5,356,279.5",
		width=1.6111];
	varscan -> bgzip_and_index_hc_snvs	[_draw_="c 7 -#000000 B 4 287.51 305.71 289.09 300.47 291.19 293.53 293.09 287.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 295.38 288.12 295.06 280.71 290.69 286.71 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 298.5 290.6 0 13 3 -vcf ",
		label=vcf,
		lp="298.5,292.5",
		pos="e,295.5,279.27 287.51,305.71 289.09,300.47 291.19,293.53 293.09,287.24"];
	bgzip_and_index_indels	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 120 260.5 120 279.5 236 279.5 236 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 178 267.5 0 100 19 -bgzip and index VCF ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="bgzip and index VCF",
		pos="178,270",
		rects="120,260.5,236,279.5",
		width=1.6111];
	varscan -> bgzip_and_index_indels	[_draw_="c 7 -#000000 B 4 263.86 305.5 247.59 298.97 224.93 289.86 206.98 282.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 207.91 280.38 200.5 280.04 206.08 284.93 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 247.5 290.6 0 13 3 -vcf ",
		label=vcf,
		lp="247.5,292.5",
		pos="e,199.1,279.48 263.86,305.5 247.59,298.97 224.93,289.86 206.98,282.64"];
	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 279 125.5 279 144.5 345 144.5 345 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 312 132.5 0 50 9 -vcf merge ",
		height=0.27778,
		label="vcf merge",
		pos="312,135",
		rects="279,125.5,345,144.5",
		width=0.91667];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 281 80.5 281 99.5 343 99.5 343 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 312 87.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="312,90",
		rects="281,80.5,343,99.5",
		width=0.86111];
	merge -> index	[_draw_="c 7 -#000000 B 4 312 125.71 312 120.59 312 113.85 312 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 314.45 107.78 312 100.78 309.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 318.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="318.5,112.5",
		pos="e,312,99.265 312,125.71 312,120.59 312,113.85 312,107.67"];
	index_indels	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 217 170.5 217 189.5 279 189.5 279 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 248 177.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="248,180",
		rects="217,170.5,279,189.5",
		width=0.86111];
	index_indels -> indels	[_draw_="c 7 -#000000 B 4 248 170.68 248 149.13 248 91.17 248 62.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 250.45 62.83 248 55.83 245.55 62.83 ",
		pos="e,248,54.317 248,170.68 248,149.13 248,91.169 248,62.509"];
	index_indels -> merge	[_draw_="c 7 -#000000 B 4 260.64 170.5 269.76 164.38 282.23 156 292.61 149.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 293.68 151.26 298.13 145.32 290.95 147.19 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 293.5 155.6 0 17 4 -vcfs ",
		label=vcfs,
		lp="293.5,157.5",
		pos="e,299.38,144.48 260.64,170.5 269.76,164.38 282.23,156 292.61,149.03"];
	index_snvs	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 342 170.5 342 189.5 404 189.5 404 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 373 177.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="373,180",
		rects="342,170.5,404,189.5",
		width=0.86111];
	merge_snvs -> index_snvs	[_draw_="c 7 -#000000 B 4 433.18 215.5 422.29 209.26 407.32 200.68 395.03 193.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 396.39 191.59 389.1 190.23 393.95 195.84 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 423.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="423.5,202.5",
		pos="e,387.79,189.48 433.18,215.5 422.29,209.26 407.32,200.68 395.03,193.63"];
	bgzip_and_index_hc_indels -> merge_indels	[_draw_="c 7 -#000000 B 7 83.86 260.55 99.74 255.4 120.52 248.72 139 243 145.59 240.96 152.63 238.82 159.43 236.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 159.8 239.23 165.81 234.88 158.4 234.53 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 162 245.6 0 46 12 -filtered_vcf ",
		label=filtered_vcf,
		lp="162,247.5",
		pos="e,167.26,234.45 83.857,260.55 99.741,255.4 120.52,248.72 139,243 145.59,240.96 152.63,238.82 159.43,236.78"];
	bgzip_and_index_snvs -> merge_snvs	[_draw_="c 7 -#000000 B 7 439.46 260.65 442.87 258.37 445.95 255.52 448 252 449.64 249.18 450.36 245.88 450.54 242.6 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 452.99 242.64 450.13 235.8 448.1 242.93 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 456.5 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="456.5,247.5",
		pos="e,450.04,234.29 439.46,260.65 442.87,258.37 445.95,255.52 448,252 449.64,249.18 450.36,245.88 450.54,242.6"];
	merge_indels -> index_indels	[_draw_="c 7 -#000000 B 4 206.27 215.5 213.4 209.62 223.04 201.64 231.26 194.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 232.75 196.79 236.58 190.44 229.63 193.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 233.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="233.5,202.5",
		pos="e,237.75,189.48 206.27,215.5 213.4,209.62 223.04,201.64 231.26,194.84"];
	bgzip_and_index_hc_snvs -> merge_snvs	[_draw_="c 7 -#000000 B 4 327.64 260.5 351.36 253.7 384.8 244.12 410.41 236.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 410.92 239.18 416.97 234.89 409.57 234.47 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 409 245.6 0 46 12 -filtered_vcf ",
		label=filtered_vcf,
		lp="409,247.5",
		pos="e,418.43,234.48 327.64,260.5 351.36,253.7 384.8,244.12 410.41,236.78"];
	intervals_to_bed -> varscan	[_draw_="c 7 -#000000 B 4 360.43 350.5 346.27 344.03 326.59 335.02 310.88 327.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 312.29 325.79 304.91 325.11 310.26 330.25 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 355.5 335.6 0 31 7 -roi_bed ",
		label=roi_bed,
		lp="355.5,337.5",
		pos="e,303.53,324.48 360.43,350.5 346.27,344.03 326.59,335.02 310.88,327.84"];
	index_snvs -> snvs	[_draw_="c 7 -#000000 B 4 373 170.68 373 149.13 373 91.17 373 62.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 375.45 62.83 373 55.83 370.55 62.83 ",
		pos="e,373,54.317 373,170.68 373,149.13 373,91.169 373,62.509"];
	index_snvs -> merge	[_draw_="c 7 -#000000 B 4 360.95 170.5 352.34 164.44 340.6 156.16 330.77 149.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 332.4 147.38 325.26 145.35 329.57 151.39 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 355.5 155.6 0 17 4 -vcfs ",
		label=vcfs,
		lp="355.5,157.5",
		pos="e,324.03,144.48 360.95,170.5 352.34,164.44 340.6,156.16 330.77,149.23"];
	bgzip_and_index_indels -> merge_indels	[_draw_="c 7 -#000000 B 4 181.47 260.71 183.71 255.36 186.7 248.22 189.38 241.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 191.51 243.06 191.96 235.66 186.99 241.17 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 195.5 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="195.5,247.5",
		pos="e,192.54,234.27 181.47,260.71 183.71,255.36 186.7,248.22 189.38,241.81"];
	index -> merged_vcf	[_draw_="c 7 -#000000 B 4 312 80.71 312 75.59 312 68.85 312 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 314.45 62.78 312 55.78 309.55 62.78 ",
		pos="e,312,54.265 312,80.709 312,75.593 312,68.848 312,62.666"];
}