digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 368 1480 368 1480 0 ",
		bb="0,0,1480,368",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 305 8 360 1472 360 1472 305 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 348 0 84 15 -Workflow Inputs ",
			bb="8,305,1472,360",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,350.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		instrument_data_bams	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1100.5 313.5 1100.5 332.5 1229.5 332.5 1229.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1165 320.5 0 113 20 -instrument_data_bams ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=instrument_data_bams,
			pos="1165,323",
			rects="1100.5,313.5,1229.5,332.5",
			width=1.7917];
		assay_non_cpg_sites	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 203.5 313.5 203.5 332.5 322.5 332.5 322.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 263 320.5 0 103 19 -assay_non_cpg_sites ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=assay_non_cpg_sites,
			pos="263,323",
			rects="203.5,313.5,322.5,332.5",
			width=1.6528];
		trimming_min_readlength	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1233.5 313.5 1233.5 332.5 1376.5 332.5 1376.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1305 320.5 0 127 23 -trimming_min_readlength ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_min_readlength,
			pos="1305,323",
			rects="1233.5,313.5,1376.5,332.5",
			width=1.9861];
		QCannotation	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1380.5 313.5 1380.5 332.5 1463.5 332.5 1463.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1422 320.5 0 67 12 -QCannotation ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=QCannotation,
			pos="1422,323",
			rects="1380.5,313.5,1463.5,332.5",
			width=1.1528];
		trimming_adapters	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 426 313.5 426 332.5 536 332.5 536 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 481 320.5 0 94 17 -trimming_adapters ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_adapters,
			pos="481,323",
			rects="426,313.5,536,332.5",
			width=1.5278];
		reference_index	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 326.5 313.5 326.5 332.5 421.5 332.5 421.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 374 320.5 0 79 15 -reference_index ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_index,
			pos="374,323",
			rects="326.5,313.5,421.5,332.5",
			width=1.3194];
		read_group_id	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 540 313.5 540 332.5 626 332.5 626 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 583 320.5 0 70 13 -read_group_id ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=read_group_id,
			pos="583,323",
			rects="540,313.5,626,332.5",
			width=1.1944];
		trimming_adapter_min_overlap	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 630 313.5 630 332.5 800 332.5 800 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 715 320.5 0 154 28 -trimming_adapter_min_overlap ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_adapter_min_overlap,
			pos="715,323",
			rects="630,313.5,800,332.5",
			width=2.3611];
		reference_sizes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 106.5 313.5 106.5 332.5 199.5 332.5 199.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 153 320.5 0 77 15 -reference_sizes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_sizes,
			pos="153,323",
			rects="106.5,313.5,199.5,332.5",
			width=1.2917];
		trimming_adapter_trim_end	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 804.5 313.5 804.5 332.5 957.5 332.5 957.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 881 320.5 0 137 25 -trimming_adapter_trim_end ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_adapter_trim_end,
			pos="881,323",
			rects="804.5,313.5,957.5,332.5",
			width=2.125];
		trimming_max_uncalled	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 961.5 313.5 961.5 332.5 1096.5 332.5 1096.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1029 320.5 0 119 21 -trimming_max_uncalled ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_max_uncalled,
			pos="1029,323",
			rects="961.5,313.5,1096.5,332.5",
			width=1.875];
		sample_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 313.5 16 332.5 102 332.5 102 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 59 320.5 0 70 11 -sample_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=sample_name,
			pos="59,323",
			rects="16,313.5,102,332.5",
			width=1.1944];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 396 8 396 63 722 63 722 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 450 15 0 92 16 -Workflow Outputs ",
			bb="396,8,722,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="450,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		gathered_directory	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 604.5 35.5 604.5 54.5 713.5 54.5 713.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 659 42.5 0 93 18 -gathered_directory ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=gathered_directory,
			pos="659,45",
			rects="604.5,35.5,713.5,54.5",
			width=1.5139];
		cpg_bigwig	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 404.5 35.5 404.5 54.5 475.5 54.5 475.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 440 42.5 0 55 10 -cpg_bigwig ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cpg_bigwig,
			pos="440,45",
			rects="404.5,35.5,475.5,54.5",
			width=0.98611];
		cram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 559.5 35.5 559.5 54.5 600.5 54.5 600.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 580 42.5 0 25 4 -cram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cram,
			pos="580,45",
			rects="559.5,35.5,600.5,54.5",
			width=0.56944];
		cpgs	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 479.5 35.5 479.5 54.5 518.5 54.5 518.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 499 42.5 0 23 4 -cpgs ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cpgs,
			pos="499,45",
			rects="479.5,35.5,518.5,54.5",
			width=0.54167];
		vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 523 35.5 523 54.5 555 54.5 555 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 539 42.5 0 16 3 -vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=vcf,
			pos="539,45",
			rects="523,35.5,555,54.5",
			width=0.44444];
	}
	bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 593.5 260.5 593.5 279.5 836.5 279.5 836.5 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 715 267.5 0 227 44 -bam to trimmed fastqs and biscuit alignments ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="bam to trimmed fastqs and biscuit alignments",
		pos="715,270",
		rects="593.5,260.5,836.5,279.5",
		width=3.375];
	instrument_data_bams -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 10 1133.29 313.53 1121.89 310.63 1108.91 307.49 1097 305 1052.44 295.69 1041.23 293.16 996 288 946.65 282.37 892.21 \
278.53 844.48 275.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 844.9 273.52 837.78 275.59 844.64 278.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1065.5 290.6 0 19 3 -bam ",
		label=bam,
		lp="1065.5,292.5",
		pos="e,836.27,275.51 1133.3,313.53 1121.9,310.63 1108.9,307.49 1097,305 1052.4,295.69 1041.2,293.16 996,288 946.65,282.37 892.21,278.53 \
844.48,275.95"];
	vcf2bed	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 150 125.5 150 144.5 532 144.5 532 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 341 132.5 0 366 77 -convert a biscuit pileup vcf to a bed and bedgraph file, via a wrapper script ",
		height=0.27778,
		label="convert a biscuit pileup vcf to a bed and bedgraph file, via a wrapper script",
		pos="341,135",
		rects="150,125.5,532,144.5",
		width=5.3056];
	assay_non_cpg_sites -> vcf2bed	[_draw_="c 7 -#000000 B 10 263.26 313.7 263.56 303.6 264 286.05 264 271 264 271 264 271 264 179 264 163.74 275.66 153.85 289.91 147.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 290.54 149.84 296.14 144.98 288.73 145.29 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 307 223.1 0 86 19 -assay_non_cpg_sites ",
		label=assay_non_cpg_sites,
		lp="307,225",
		pos="e,297.55,144.42 263.26,313.7 263.56,303.6 264,286.05 264,271 264,271 264,271 264,179 264,163.74 275.66,153.85 289.91,147.46"];
	trimming_min_readlength -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 1271.56 313.57 1258.64 310.54 1243.69 307.3 1230 305 1099.98 283.16 949.29 275.19 844.64 272.37 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 844.82 269.92 837.75 272.19 844.69 274.82 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1206 290.6 0 64 14 -min_readlength ",
		label=min_readlength,
		lp="1206,292.5",
		pos="e,836.24,272.15 1271.6,313.57 1258.6,310.54 1243.7,307.3 1230,305 1100,283.16 949.29,275.19 844.64,272.37"];
	bisulfite_qc	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 622.5 125.5 622.5 144.5 723.5 144.5 723.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 673 132.5 0 85 18 -Bisulfite QC tools ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="Bisulfite QC tools",
		pos="673,135",
		rects="622.5,125.5,723.5,144.5",
		width=1.4028];
	QCannotation -> bisulfite_qc	[_draw_="c 7 -#000000 B 10 1395.92 313.55 1377.47 305.76 1356 292.14 1356 271 1356 271 1356 271 1356 179 1356 147.84 897.13 138.87 731.63 \
136.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 732.05 134.21 725.01 136.56 731.98 139.11 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1384.5 223.1 0 57 12 -QCannotation ",
		label=QCannotation,
		lp="1384.5,225",
		pos="e,723.5,136.54 1395.9,313.55 1377.5,305.76 1356,292.14 1356,271 1356,271 1356,271 1356,179 1356,147.84 897.13,138.87 731.63,136.65"];
	trimming_adapters -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 509.62 313.58 543.61 303.59 595.89 288.24 597 288 609.65 285.25 623.15 282.83 636.35 280.74 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 636.47 283.2 643.01 279.71 635.72 278.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 615.5 290.6 0 37 8 -adapters ",
		label=adapters,
		lp="615.5,292.5",
		pos="e,644.51,279.48 509.62,313.58 543.61,303.59 595.89,288.24 597,288 609.65,285.25 623.15,282.83 636.35,280.74"];
	reference_index -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 13 396.78 313.54 405.78 310.46 416.27 307.21 426 305 452.67 298.95 461.32 306.4 487 297 493.95 294.46 493.99 290.36 \
501 288 517.43 282.46 550.18 278.7 585.23 276.16 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 585.37 278.61 592.18 275.68 585.03 273.72 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 534 290.6 0 66 15 -reference_index ",
		label=reference_index,
		lp="534,292.5",
		pos="e,593.69,275.57 396.78,313.54 405.78,310.46 416.27,307.21 426,305 452.67,298.95 461.32,306.4 487,297 493.95,294.46 493.99,290.36 \
501,288 517.43,282.46 550.18,278.7 585.23,276.16"];
	reference_index -> vcf2bed	[_draw_="c 7 -#000000 B 10 370.17 313.53 366.03 303.57 360 286.43 360 271 360 271 360 271 360 179 360 169.33 355.93 159.4 351.56 151.52 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 353.75 150.4 348.01 145.7 349.56 152.95 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 380 223.1 0 40 9 -reference ",
		label=reference,
		lp="380,225",
		pos="e,347.22,144.41 370.17,313.53 366.03,303.57 360,286.43 360,271 360,271 360,271 360,179 360,169.33 355.93,159.4 351.56,151.52"];
	bam_to_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 526 170.5 526 189.5 666 189.5 666 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 596 177.5 0 124 22 -BAM to CRAM conversion ",
		height=0.27778,
		label="BAM to CRAM conversion",
		pos="596,180",
		rects="526,170.5,666,189.5",
		width=1.9444];
	reference_index -> bam_to_cram	[_draw_="c 7 -#000000 B 10 395.33 313.51 405.29 309.16 417.1 303.43 427 297 483.57 260.28 483.07 230.8 542 198 545.72 195.93 549.72 194.08 \
553.8 192.42 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 554.58 194.75 560.29 190.01 552.88 190.15 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 506 245.6 0 40 9 -reference ",
		label=reference,
		lp="506,247.5",
		pos="e,561.71,189.49 395.33,313.51 405.29,309.16 417.1,303.43 427,297 483.57,260.28 483.07,230.8 542,198 545.72,195.93 549.72,194.08 \
553.8,192.42"];
	reference_index -> bisulfite_qc	[_draw_="c 7 -#000000 B 10 390.59 313.5 404.8 304.9 423 290.15 423 271 423 271 423 271 423 179 423 137.13 559.64 149.92 614.37 145.37 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 614.52 147.82 621.2 144.61 613.97 142.95 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 443 223.1 0 40 9 -reference ",
		label=reference,
		lp="443,225",
		pos="e,622.71,144.44 390.59,313.5 404.8,304.9 423,290.15 423,271 423,271 423,271 423,179 423,137.13 559.64,149.92 614.37,145.37"];
	pileup	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 438.5 170.5 438.5 189.5 521.5 189.5 521.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 480 177.5 0 67 14 -Biscuit pileup ",
		height=0.27778,
		label="Biscuit pileup",
		pos="480,180",
		rects="438.5,170.5,521.5,189.5",
		width=1.1528];
	reference_index -> pileup	[_draw_="c 7 -#000000 B 10 378.47 313.74 387.55 297.73 409.73 262.33 438 243 447.63 236.41 454.77 243.27 463 235 472.95 225.01 477.08 209.26 \
478.8 197.34 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 481.21 197.87 479.53 190.64 476.33 197.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 458 245.6 0 40 9 -reference ",
		label=reference,
		lp="458,247.5",
		pos="e,479.69,189.14 378.47,313.74 387.55,297.73 409.73,262.33 438,243 447.63,236.41 454.77,243.27 463,235 472.95,225.01 477.08,209.26 \
478.8,197.34"];
	read_group_id -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 599.21 313.56 613.8 306.18 635.97 295.5 656 288 661.9 285.79 668.21 283.7 674.44 281.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 674.79 284.24 680.79 279.89 673.39 279.54 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 685 290.6 0 58 13 -read_group_id ",
		label=read_group_id,
		lp="685,292.5",
		pos="e,682.24,279.46 599.21,313.56 613.8,306.18 635.97,295.5 656,288 661.9,285.79 668.21,283.7 674.44,281.78"];
	trimming_adapter_min_overlap -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 4 715 313.58 715 306.52 715 296.24 715 287.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 717.45 287.78 715 280.78 712.55 287.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 758 290.6 0 86 19 -adapter_min_overlap ",
		label=adapter_min_overlap,
		lp="758,292.5",
		pos="e,715,279.26 715,313.58 715,306.52 715,296.24 715,287.55"];
	bedgraph_to_bigwig	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 257 80.5 257 99.5 425 99.5 425 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 341 87.5 0 152 29 -bedGraph to bigwig conversion ",
		height=0.27778,
		label="bedGraph to bigwig conversion",
		pos="341,90",
		rects="257,80.5,425,99.5",
		width=2.3333];
	reference_sizes -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 10 150.37 313.79 147.41 303.8 143 286.34 143 271 143 271 143 271 143 134 143 110.46 197.12 99.78 248.77 94.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 248.76 97.41 255.52 94.36 248.33 92.53 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 175.5 200.6 0 65 15 -reference_sizes ",
		label=reference_sizes,
		lp="175.5,202.5",
		pos="e,257.03,94.223 150.37,313.79 147.41,303.8 143,286.34 143,271 143,271 143,271 143,134 143,110.46 197.12,99.781 248.77,94.949"];
	trimming_adapter_trim_end -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 864.44 313.64 848.72 306 824.25 294.88 802 288 793.75 285.45 784.95 283.2 776.22 281.25 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 776.73 278.85 769.38 279.78 775.71 283.64 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 862 290.6 0 72 16 -adapter_trim_end ",
		label=adapter_trim_end,
		lp="862,292.5",
		pos="e,767.9,279.46 864.44,313.64 848.72,306 824.25,294.88 802,288 793.75,285.45 784.95,283.2 776.22,281.25"];
	trimming_max_uncalled -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 1001.9 313.52 975.8 305.69 935.07 294.34 899 288 881.46 284.92 862.88 282.37 844.54 280.28 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 844.86 277.85 837.63 279.51 844.32 282.72 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 966.5 290.6 0 57 12 -max_uncalled ",
		label=max_uncalled,
		lp="966.5,292.5",
		pos="e,836.13,279.35 1001.9,313.52 975.8,305.69 935.07,294.34 899,288 881.46,284.92 862.88,282.37 844.54,280.28"];
	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 580 215.5 580 234.5 690 234.5 690 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 635 222.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="635,225",
		rects="580,215.5,690,234.5",
		width=1.5278];
	bam_to_trimmed_fastq_and_biscuit_alignments -> merge	[_draw_="c 7 -#000000 B 4 699.19 260.5 687.47 254.2 671.3 245.51 658.13 238.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 659.43 236.35 652.11 235.19 657.11 240.67 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 693.5 245.6 0 23 4 -bams ",
		label=bams,
		lp="693.5,247.5",
		pos="e,650.77,234.48 699.19,260.5 687.47,254.2 671.3,245.51 658.13,238.43"];
	bedgraph_to_bigwig -> cpg_bigwig	[_draw_="c 7 -#000000 B 4 360.56 80.5 375.47 74.03 396.2 65.02 412.74 57.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 413.65 60.12 419.09 55.08 411.7 55.62 ",
		pos="e,420.48,54.478 360.56,80.505 375.47,74.026 396.2,65.024 412.74,57.84"];
	vcf2bed -> cpgs	[_draw_="c 7 -#000000 B 7 414.51 125.64 421.66 123.38 428.62 120.55 435 117 459.14 103.56 478.95 77.57 489.85 61.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 491.71 62.68 493.41 55.46 487.58 60.05 ",
		pos="e,494.22,54.187 414.51,125.64 421.66,123.38 428.62,120.55 435,117 459.14,103.56 478.95,77.568 489.85,61.038"];
	vcf2bed -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 4 341 125.71 341 120.59 341 113.85 341 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 343.45 107.78 341 100.78 338.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 387.5 110.6 0 93 20 -methylation_bedgraph ",
		label=methylation_bedgraph,
		lp="387.5,112.5",
		pos="e,341,99.265 341,125.71 341,120.59 341,113.85 341,107.67"];
	index_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 546.5 80.5 546.5 99.5 665.5 99.5 665.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 606 87.5 0 103 19 -samtools index cram ",
		height=0.27778,
		label="samtools index cram",
		pos="606,90",
		rects="546.5,80.5,665.5,99.5",
		width=1.6528];
	bam_to_cram -> index_cram	[_draw_="c 7 -#000000 B 7 596.36 170.56 596.88 159.91 598 141.04 600 125 600.72 119.22 601.76 112.94 602.77 107.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 605.11 108.17 604 100.84 600.29 107.26 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 610.5 133.1 0 21 4 -cram ",
		label=cram,
		lp="610.5,135",
		pos="e,604.28,99.348 596.36,170.56 596.88,159.91 598,141.04 600,125 600.72,119.22 601.76,112.94 602.77,107.36"];
	bisulfite_qc -> gathered_directory	[_draw_="c 7 -#000000 B 7 672.1 125.55 670.92 114.9 668.69 96.04 666 80 665.03 74.23 663.79 67.94 662.62 62.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 665.09 62.16 661.22 55.83 660.3 63.19 ",
		pos="e,660.9,54.351 672.1,125.55 670.92,114.9 668.69,96.036 666,80 665.03,74.227 663.79,67.941 662.62,62.361"];
	merge -> bam_to_cram	[_draw_="c 7 -#000000 B 4 627.48 215.71 622.3 210 615.28 202.26 609.18 195.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 611.03 193.93 604.51 190.39 607.4 197.22 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 627.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="627.5,202.5",
		pos="e,603.5,189.27 627.48,215.71 622.3,210 615.28,202.26 609.18,195.54"];
	merge -> bisulfite_qc	[_draw_="c 7 -#000000 B 7 645.43 215.63 652.47 209.36 661.3 200.15 666 190 671.4 178.34 673.04 163.84 673.39 152.8 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 675.84 153 673.43 145.99 670.94 152.98 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 680.5 178.1 0 19 3 -bam ",
		label=bam,
		lp="680.5,180",
		pos="e,673.43,144.48 645.43,215.63 652.47,209.36 661.3,200.15 666,190 671.4,178.34 673.04,163.84 673.39,152.8"];
	merge -> pileup	[_draw_="c 7 -#000000 B 4 604.38 215.5 579.75 208.67 545.01 199.03 518.5 191.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 519.42 189.39 512.02 189.88 518.11 194.11 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 580.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="580.5,202.5",
		pos="e,510.56,189.48 604.38,215.5 579.75,208.67 545.01,199.03 518.5,191.68"];
	pileup -> vcf	[_draw_="c 7 -#000000 B 7 501.55 170.53 512.61 165 525.17 156.63 532 145 547.05 119.38 545 83.34 542.06 62.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 544.52 62.43 540.99 55.91 539.68 63.21 ",
		pos="e,540.75,54.413 501.55,170.53 512.61,165 525.17,156.63 532,145 547.05,119.38 545,83.342 542.06,62.556"];
	pileup -> vcf2bed	[_draw_="c 7 -#000000 B 4 452.54 170.5 430.74 163.76 400.1 154.28 376.45 146.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 377.26 144.65 369.85 144.93 375.81 149.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 428.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="428.5,157.5",
		pos="e,368.4,144.48 452.54,170.5 430.74,163.76 400.1,154.28 376.45,146.97"];
	pileup -> bisulfite_qc	[_draw_="c 7 -#000000 B 4 518.13 170.5 549.32 163.56 593.55 153.7 626.76 146.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 627.17 148.72 633.47 144.81 626.11 143.94 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 599.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="599.5,157.5",
		pos="e,634.95,144.48 518.13,170.5 549.32,163.56 593.55,153.7 626.76,146.3"];
	index_cram -> cram	[_draw_="c 7 -#000000 B 4 600.99 80.71 597.68 75.24 593.24 67.9 589.3 61.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 591.5 60.28 585.78 55.56 587.31 62.82 ",
		pos="e,585,54.265 600.99,80.709 597.68,75.236 593.24,67.899 589.3,61.381"];
}