digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 233 912 233 912 0 ",
		bb="0,0,912,233",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
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		fontsize=10,
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		style=filled,
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	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
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	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 209 170 209 225 904 225 904 170 ",
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			lheight=0.15,
			lp="259,215.5",
			lwidth=1.17,
			rank=same,
			style=dashed
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		diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 217.5 178.5 217.5 197.5 274.5 197.5 274.5 178.5 ",
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			label=diagram,
			pos="246,188",
			rects="217.5,178.5,274.5,197.5",
			width=0.79167];
		cnvkit_vcf_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 796 178.5 796 197.5 896 197.5 896 178.5 ",
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			fillcolor="#94DDF4",
			height=0.27778,
			label=cnvkit_vcf_name,
			pos="846,188",
			rects="796,178.5,896,197.5",
			width=1.3889];
		drop_low_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 278.5 178.5 278.5 197.5 389.5 197.5 389.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 334 185.5 0 95 17 -drop_low_coverage ",
			fillcolor="#94DDF4",
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			label=drop_low_coverage,
			pos="334,188",
			rects="278.5,178.5,389.5,197.5",
			width=1.5417];
		male_reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 562.5 178.5 562.5 197.5 655.5 197.5 655.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 609 185.5 0 77 14 -male_reference ",
			fillcolor="#94DDF4",
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			label=male_reference,
			pos="609,188",
			rects="562.5,178.5,655.5,197.5",
			width=1.2917];
		scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 394 178.5 394 197.5 468 197.5 468 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 431 185.5 0 58 12 -scatter_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=scatter_plot,
			pos="431,188",
			rects="394,178.5,468,197.5",
			width=1.0278];
		reference_cnn	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 472 178.5 472 197.5 558 197.5 558 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 515 185.5 0 70 13 -reference_cnn ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_cnn,
			pos="515,188",
			rects="472,178.5,558,197.5",
			width=1.1944];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 718.5 178.5 718.5 197.5 791.5 197.5 791.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 755 185.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="755,188",
			rects="718.5,178.5,791.5,197.5",
			width=1.0139];
		method	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 660 178.5 660 197.5 714 197.5 714 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 687 185.5 0 38 6 -method ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=method,
			pos="687,188",
			rects="660,178.5,714,197.5",
			width=0.75];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 8 8 63 830 63 830 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 62 15 0 92 16 -Workflow Outputs ",
			bb="8,8,830,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="62,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		tumor_bin_level_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 448 35.5 448 54.5 576 54.5 576 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 512 42.5 0 112 22 -tumor_bin_level_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bin_level_ratios,
			pos="512,45",
			rects="448,35.5,576,54.5",
			width=1.7778];
		cn_scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 580.5 35.5 580.5 54.5 671.5 54.5 671.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 626 42.5 0 75 15 -cn_scatter_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_scatter_plot,
			pos="626,45",
			rects="580.5,35.5,671.5,54.5",
			width=1.2639];
		cn_diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 676 35.5 676 54.5 750 54.5 750 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 713 42.5 0 58 10 -cn_diagram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_diagram,
			pos="713,45",
			rects="676,35.5,750,54.5",
			width=1.0278];
		tumor_target_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 35.5 16.5 54.5 147.5 54.5 147.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 82 42.5 0 115 21 -tumor_target_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_target_coverage,
			pos="82,45",
			rects="16.5,35.5,147.5,54.5",
			width=1.8194];
		tumor_segmented_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 151.5 35.5 151.5 54.5 290.5 54.5 290.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 221 42.5 0 123 22 -tumor_segmented_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_segmented_ratios,
			pos="221,45",
			rects="151.5,35.5,290.5,54.5",
			width=1.9306];
		tumor_antitarget_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 294.5 35.5 294.5 54.5 443.5 54.5 443.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 369 42.5 0 133 25 -tumor_antitarget_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_antitarget_coverage,
			pos="369,45",
			rects="294.5,35.5,443.5,54.5",
			width=2.0694];
		cnvkit_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 754.5 35.5 754.5 54.5 821.5 54.5 821.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 788 42.5 0 51 10 -cnvkit_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cnvkit_vcf,
			pos="788,45",
			rects="754.5,35.5,821.5,54.5",
			width=0.93056];
	}
	cnvkit_main	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 473.5 125.5 473.5 144.5 550.5 144.5 550.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 512 132.5 0 61 11 -cnvkit_main ",
		height=0.27778,
		label=cnvkit_main,
		pos="512,135",
		rects="473.5,125.5,550.5,144.5",
		width=1.0694];
	diagram -> cnvkit_main	[_draw_="c 7 -#000000 B 7 260.28 178.65 275.13 170.43 299.36 158.37 322 153 369.93 141.63 426.31 137.74 465.14 136.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 465.19 138.91 472.12 136.26 465.05 134.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 339 155.6 0 34 7 -diagram ",
		label=diagram,
		lp="339,157.5",
		pos="e,473.63,136.22 260.28,178.65 275.13,170.43 299.36,158.37 322,153 369.93,141.63 426.31,137.74 465.14,136.47"];
	cns_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 583.5 80.5 583.5 99.5 878.5 99.5 878.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 731 87.5 0 279 57 -Convert default cnvkit .cns output to standard vcf format ",
		height=0.27778,
		label="Convert default cnvkit .cns output to standard vcf format",
		pos="731,90",
		rects="583.5,80.5,878.5,99.5",
		width=4.0972];
	cnvkit_vcf_name -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 840.88 178.9 832.51 166.16 814.85 141.23 795 125 784.21 116.18 770.78 108.63 759.01 102.9 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 760.31 100.8 752.93 100.04 758.23 105.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 842.5 133.1 0 55 11 -output_name ",
		label=output_name,
		lp="842.5,135",
		pos="e,751.56,99.401 840.88,178.9 832.51,166.16 814.85,141.23 795,125 784.21,116.18 770.78,108.63 759.01,102.9"];
	drop_low_coverage -> cnvkit_main	[_draw_="c 7 -#000000 B 7 340.58 178.71 347.48 170.66 359.1 158.84 372 153 388.19 145.67 431.05 141.18 465.12 138.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 465.25 141.12 472.06 138.19 464.91 136.23 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 411.5 155.6 0 79 17 -drop_low_coverage ",
		label=drop_low_coverage,
		lp="411.5,157.5",
		pos="e,473.57,138.08 340.58,178.71 347.48,170.66 359.1,158.84 372,153 388.19,145.67 431.05,141.18 465.12,138.68"];
	male_reference -> cnvkit_main	[_draw_="c 7 -#000000 B 7 600.6 178.67 591.5 169.8 577.43 156.56 571 153 567.04 150.81 562.76 148.87 558.39 147.17 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 559.3 144.9 551.89 144.87 557.67 149.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 614 155.6 0 64 14 -male_reference ",
		label=male_reference,
		lp="614,157.5",
		pos="e,550.46,144.36 600.6,178.67 591.5,169.8 577.43,156.56 571,153 567.04,150.81 562.76,148.87 558.39,147.17"];
	male_reference -> cns_to_vcf	[_draw_="c 7 -#000000 B 10 622.12 178.58 628.91 173.99 637.17 168.03 644 162 660.73 147.21 660.9 139.37 678 125 687.47 117.04 698.92 109.47 \
708.76 103.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 709.82 105.73 714.6 100.05 707.33 101.51 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 710 133.1 0 64 14 -male_reference ",
		label=male_reference,
		lp="710,135",
		pos="e,715.9,99.28 622.12,178.58 628.91,173.99 637.17,168.03 644,162 660.73,147.21 660.9,139.37 678,125 687.47,117.04 698.92,109.47 708.76,\
103.51"];
	scatter_plot -> cnvkit_main	[_draw_="c 7 -#000000 B 7 436.98 178.64 442.83 171 452.39 159.88 463 153 466.06 151.02 469.37 149.24 472.79 147.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 473.47 150.02 478.97 145.04 471.57 145.5 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 487.5 155.6 0 49 12 -scatter_plot ",
		label=scatter_plot,
		lp="487.5,157.5",
		pos="e,480.37,144.45 436.98,178.64 442.83,171 452.39,159.88 463,153 466.06,151.02 469.37,149.24 472.79,147.65"];
	reference_cnn -> cnvkit_main	[_draw_="c 7 -#000000 B 4 514.5 178.58 514.09 171.52 513.48 161.24 512.97 152.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 515.43 152.62 512.58 145.78 510.54 152.91 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 542.5 155.6 0 59 13 -reference_cnn ",
		label=reference_cnn,
		lp="542.5,157.5",
		pos="e,512.49,144.26 514.5,178.58 514.09,171.52 513.48,161.24 512.97,152.55"];
	tumor_bam -> cnvkit_main	[_draw_="c 7 -#000000 B 10 738.29 178.54 729.22 173.84 717.89 167.79 708 162 701.62 158.26 700.99 155.41 694 153 681.52 148.69 608.39 142.81 \
558.71 139.21 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 559.01 136.77 551.85 138.72 558.66 141.66 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 731 155.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="731,157.5",
		pos="e,550.34,138.61 738.29,178.54 729.22,173.84 717.89,167.79 708,162 701.62,158.26 700.99,155.41 694,153 681.52,148.69 608.39,142.81 \
558.71,139.21"];
	tumor_bam -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 754.47 178.54 753.92 171.62 752.87 161.59 751 153 747.52 137.02 741.59 119.31 737.08 106.92 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 739.51 106.41 734.77 100.7 734.92 108.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 771 133.1 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="771,135",
		pos="e,734.24,99.282 754.47,178.54 753.92,171.62 752.87,161.59 751,153 747.52,137.02 741.59,119.31 737.08,106.92"];
	method -> cnvkit_main	[_draw_="c 7 -#000000 B 7 679.97 178.72 672.63 170.69 660.35 158.88 647 153 631.5 146.18 591.03 141.66 558.41 139.01 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 558.99 136.6 551.82 138.5 558.61 141.49 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 677 155.6 0 32 6 -method ",
		label=method,
		lp="677,157.5",
		pos="e,550.31,138.38 679.97,178.72 672.63,170.69 660.35,158.88 647,153 631.5,146.18 591.03,141.66 558.41,139.01"];
	cnvkit_main -> tumor_bin_level_ratios	[_draw_="c 7 -#000000 B 4 512 125.56 512 111.14 512 81.48 512 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 514.45 62.8 512 55.8 509.55 62.8 ",
		pos="e,512,54.284 512,125.56 512,111.14 512,81.476 512,62.727"];
	cnvkit_main -> cn_scatter_plot	[_draw_="c 7 -#000000 B 10 514.91 125.72 520.06 112.25 532.06 85.62 551 71 560.57 63.61 565.51 66.76 577 63 582.65 61.15 588.64 59.13 594.43 \
57.14 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 594.89 59.57 600.7 54.97 593.28 54.94 ",
		pos="e,602.13,54.471 514.91,125.72 520.06,112.25 532.06,85.622 551,71 560.57,63.611 565.51,66.76 577,63 582.65,61.152 588.64,59.127 594.43,\
57.139"];
	cnvkit_main -> cn_diagram	[_draw_="c 7 -#000000 B 10 520.18 125.54 532.43 113.41 556.79 91.31 582 80 619.14 63.33 632.99 74.64 672 63 677.04 61.5 682.31 59.59 687.32 \
57.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 688 59.96 693.53 55.02 686.12 55.44 ",
		pos="e,694.92,54.44 520.18,125.54 532.43,113.41 556.79,91.313 582,80 619.14,63.331 632.99,74.635 672,63 677.04,61.497 682.31,59.587 687.32,\
57.594"];
	cnvkit_main -> tumor_target_coverage	[_draw_="c 7 -#000000 B 7 473.51 127.03 407.52 114.93 268.61 88.87 152 63 142.84 60.97 133.04 58.67 123.75 56.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 124.61 54.12 117.23 54.84 123.46 58.88 ",
		pos="e,115.76,54.487 473.51,127.03 407.52,114.93 268.61,88.873 152,63 142.84,60.968 133.04,58.666 123.75,56.429"];
	cnvkit_main -> tumor_segmented_ratios	[_draw_="c 7 -#000000 B 4 484.1 125.56 430.97 109.5 315.38 74.54 256.71 56.8 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 257.68 54.53 250.27 54.85 256.26 59.22 ",
		pos="e,248.82,54.412 484.1,125.56 430.97,109.5 315.38,74.542 256.71,56.798"];
	cnvkit_main -> tumor_antitarget_coverage	[_draw_="c 7 -#000000 B 4 498.29 125.56 473.03 110.02 419.02 76.78 389.43 58.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 391 56.66 383.75 55.08 388.43 60.83 ",
		pos="e,382.46,54.284 498.29,125.56 473.03,110.02 419.02,76.78 389.43,58.57"];
	cnvkit_main -> cns_to_vcf	[_draw_="c 7 -#000000 B 10 537.14 125.64 544.28 123.07 552.02 120.09 559 117 566.82 113.54 567.83 110.51 576 108 584.81 105.29 594.01 103.01 \
603.35 101.08 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 603.7 103.5 610.1 99.76 602.76 98.7 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 591 110.6 0 30 8 -cnr_file ",
		label=cnr_file,
		lp="591,112.5",
		pos="e,611.59,99.469 537.14,125.64 544.28,123.07 552.02,120.09 559,117 566.82,113.54 567.83,110.51 576,108 584.81,105.29 594.01,103.01 \
603.35,101.08"];
	cnvkit_main -> cns_to_vcf	[_draw_="c 7 -#000000 B 10 550.22 130.49 566.89 128.05 586.39 123.93 603 117 609.49 114.3 609.46 110.58 616 108 622.41 105.47 629.15 103.31 \
636.03 101.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 636.48 103.88 642.68 99.82 635.3 99.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 631.5 110.6 0 31 8 -cns_file ",
		label=cns_file,
		lp="631.5,112.5",
		pos="e,644.15,99.453 550.22,130.49 566.89,128.05 586.39,123.93 603,117 609.49,114.3 609.46,110.58 616,108 622.41,105.47 629.15,103.31 \
636.03,101.47"];
	cns_to_vcf -> cnvkit_vcf	[_draw_="c 7 -#000000 B 4 742.26 80.5 750.22 74.5 761.06 66.32 770.19 59.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 771.44 61.56 775.55 55.39 768.49 57.65 ",
		pos="e,776.76,54.478 742.26,80.505 750.22,74.497 761.06,66.32 770.19,59.435"];
}