digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 548 517 548 517 0 ",
		bb="0,0,517,548",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 485 8 540 487 540 487 485 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 528 0 84 15 -Workflow Inputs ",
			bb="8,485,487,540",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,530.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 493.5 16.5 512.5 89.5 512.5 89.5 493.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 53 500.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="53,503",
			rects="16.5,493.5,89.5,512.5",
			width=1.0139];
		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 415.5 493.5 415.5 512.5 478.5 512.5 478.5 493.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 447 500.5 0 47 9 -reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference,
			pos="447,503",
			rects="415.5,493.5,478.5,512.5",
			width=0.875];
		insert_size	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 93.5 493.5 93.5 512.5 162.5 512.5 162.5 493.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 128 500.5 0 53 11 -insert_size ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=insert_size,
			pos="128,503",
			rects="93.5,493.5,162.5,512.5",
			width=0.95833];
		scatter_count	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 245.5 493.5 245.5 512.5 328.5 512.5 328.5 493.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 287 500.5 0 67 13 -scatter_count ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=scatter_count,
			pos="287,503",
			rects="245.5,493.5,328.5,512.5",
			width=1.1528];
		interval_list	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 167 493.5 167 512.5 241 512.5 241 493.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 204 500.5 0 58 13 -interval_list ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=interval_list,
			pos="204,503",
			rects="167,493.5,241,512.5",
			width=1.0278];
		normal_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 333 493.5 333 512.5 411 512.5 411 493.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 372 500.5 0 62 10 -normal_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_bam,
			pos="372,503",
			rects="333,493.5,411,512.5",
			width=1.0833];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 289 8 289 63 464 63 464 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 343 15 0 92 16 -Workflow Outputs ",
			bb="289,8,464,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="343,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		unfiltered_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 297.5 35.5 297.5 54.5 380.5 54.5 380.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 339 42.5 0 67 14 -unfiltered_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=unfiltered_vcf,
			pos="339,45",
			rects="297.5,35.5,380.5,54.5",
			width=1.1528];
		filtered_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 384.5 35.5 384.5 54.5 455.5 54.5 455.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 420 42.5 0 55 12 -filtered_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=filtered_vcf,
			pos="420,45",
			rects="384.5,35.5,455.5,54.5",
			width=0.98611];
	}
	pindel_cat	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 203 395.5 203 414.5 303 414.5 303 395.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 253 402.5 0 84 17 -Per-region pindel ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="Per-region pindel",
		pos="253,405",
		rects="203,395.5,303,414.5",
		width=1.3889];
	tumor_bam -> pindel_cat	[_draw_="c 7 -#000000 B 7 55.67 493.52 60.81 477.43 71.9 443.77 76 440 93.13 424.25 150.11 415.32 194.84 410.61 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 194.82 413.07 201.54 409.93 194.32 408.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 99 448.1 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="99,450",
		pos="e,203.04,409.78 55.673,493.52 60.807,477.43 71.902,443.77 76,440 93.127,424.25 150.11,415.32 194.84,410.61"];
	filter	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 328.5 80.5 328.5 99.5 429.5 99.5 429.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 379 87.5 0 85 18 -fp_filter workflow ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="fp_filter workflow",
		pos="379,90",
		rects="328.5,80.5,429.5,99.5",
		width=1.4028];
	tumor_bam -> filter	[_draw_="c 7 -#000000 B 10 53.79 493.71 54.68 483.62 56 466.08 56 451 56 451 56 451 56 134 56 107.67 226.85 96.89 320.04 92.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 320.12 95.42 327.02 92.69 319.92 90.53 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 65.5 290.6 0 19 3 -bam ",
		label=bam,
		lp="65.5,292.5",
		pos="e,328.53,92.627 53.788,493.71 54.677,483.62 56,466.08 56,451 56,451 56,451 56,134 56,107.67 226.85,96.893 320.04,92.975"];
	somaticfilter	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 314.5 305.5 314.5 324.5 443.5 324.5 443.5 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 379 312.5 0 113 24 -pindel somatic filter v1 ",
		height=0.27778,
		label="pindel somatic filter v1",
		pos="379,315",
		rects="314.5,305.5,443.5,324.5",
		width=1.7917];
	reference -> somaticfilter	[_draw_="c 7 -#000000 B 13 442.35 493.62 437.32 483.74 430 466.68 430 451 430 451 430 451 430 359 430 347.03 431 341.9 423 333 421.61 331.46 \
420.06 330.05 418.41 328.77 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 420.05 326.91 412.83 325.25 417.44 331.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 450 403.1 0 40 9 -reference ",
		label=reference,
		lp="450,405",
		pos="e,411.55,324.44 442.35,493.62 437.32,483.74 430,466.68 430,451 430,451 430,451 430,359 430,347.03 431,341.9 423,333 421.61,331.46 \
420.06,330.05 418.41,328.77"];
	reference -> pindel_cat	[_draw_="c 7 -#000000 B 10 430.67 493.57 417.41 486.1 398.85 474.21 386 460 379.19 452.48 382.95 446.3 375 440 356.81 425.59 332.89 417.29 \
311.05 412.5 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 311.63 410.12 304.28 411.13 310.66 414.92 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 406 448.1 0 40 9 -reference ",
		label=reference,
		lp="406,450",
		pos="e,302.8,410.83 430.67,493.57 417.41,486.1 398.85,474.21 386,460 379.19,452.48 382.95,446.3 375,440 356.81,425.59 332.89,417.29 311.05,\
412.5"];
	reference -> filter	[_draw_="c 7 -#000000 B 10 455.84 493.5 464.69 484.04 477 467.85 477 451 477 451 477 451 477 134 477 113.32 458.48 102.5 437.54 96.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 438.28 94.52 430.91 95.3 437.16 99.29 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 497 290.6 0 40 9 -reference ",
		label=reference,
		lp="497,292.5",
		pos="e,429.44,94.952 455.84,493.5 464.69,484.04 477,467.85 477,451 477,451 477,451 477,134 477,113.32 458.48,102.5 437.54,96.866"];
	insert_size -> pindel_cat	[_draw_="c 7 -#000000 B 7 125.64 493.72 122.49 480.75 118.63 455.5 131 440 146.28 420.86 171.35 411.94 194.81 407.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 194.95 410.42 201.52 406.98 194.24 405.58 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 153 448.1 0 44 11 -insert_size ",
		label=insert_size,
		lp="153,450",
		pos="e,203.02,406.76 125.64,493.72 122.49,480.75 118.63,455.5 131,440 146.28,420.86 171.35,411.94 194.81,407.97"];
	split_interval_list_to_bed	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 176.5 440.5 176.5 459.5 315.5 459.5 315.5 440.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 246 447.5 0 123 26 -split_interval_list_to_bed ",
		height=0.27778,
		label=split_interval_list_to_bed,
		pos="246,450",
		rects="176.5,440.5,315.5,459.5",
		width=1.9306];
	scatter_count -> split_interval_list_to_bed	[_draw_="c 7 -#000000 B 7 279.04 493.92 274.47 489.15 268.72 482.9 264 477 261.31 473.64 258.58 469.9 256.09 466.33 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 258.2 465.08 252.24 460.66 254.15 467.83 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 292 470.6 0 56 13 -scatter_count ",
		label=scatter_count,
		lp="292,472.5",
		pos="e,251.39,459.41 279.04,493.92 274.47,489.15 268.72,482.9 264,477 261.31,473.64 258.58,469.9 256.09,466.33"];
	interval_list -> split_interval_list_to_bed	[_draw_="c 7 -#000000 B 7 203.12 493.61 202.8 486.16 203.49 475.35 209 468 209.99 466.68 211.1 465.47 212.3 464.34 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 213.57 466.46 217.77 460.34 210.67 462.5 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 232.5 470.6 0 47 13 -interval_list ",
		label=interval_list,
		lp="232.5,472.5",
		pos="e,218.99,459.45 203.12,493.61 202.8,486.16 203.49,475.35 209,468 209.99,466.68 211.1,465.47 212.3,464.34"];
	normal_bam -> pindel_cat	[_draw_="c 7 -#000000 B 13 361.45 493.8 351.71 485.87 337.24 473.16 327 460 320.77 451.99 322.6 447.71 316 440 307.97 430.61 304.69 429.2 \
294 423 290.84 421.17 287.44 419.43 284.01 417.82 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 285.28 415.7 277.88 415.1 283.29 420.18 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 352.5 448.1 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="352.5,450",
		pos="e,276.5,414.49 361.45,493.8 351.71,485.87 337.24,473.16 327,460 320.77,451.99 322.6,447.71 316,440 307.97,430.61 304.69,429.2 294,\
423 290.84,421.17 287.44,419.43 284.01,417.82"];
	bgzip	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 346.5 260.5 346.5 279.5 411.5 279.5 411.5 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 379 267.5 0 49 9 -bgzip VCF ",
		height=0.27778,
		label="bgzip VCF",
		pos="379,270",
		rects="346.5,260.5,411.5,279.5",
		width=0.90278];
	somaticfilter -> bgzip	[_draw_="c 7 -#000000 B 4 379 305.71 379 300.59 379 293.85 379 287.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 381.45 287.78 379 280.78 376.55 287.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 385.5 290.6 0 13 4 -file ",
		label=file,
		lp="385.5,292.5",
		pos="e,379,279.27 379,305.71 379,300.59 379,293.85 379,287.67"];
	cat_all	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 286.5 350.5 286.5 369.5 335.5 369.5 335.5 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 311 357.5 0 33 7 -cat_all ",
		height=0.27778,
		label=cat_all,
		pos="311,360",
		rects="286.5,350.5,335.5,369.5",
		width=0.68056];
	pindel_cat -> cat_all	[_draw_="c 7 -#000000 B 4 264.46 395.5 272.56 389.5 283.59 381.32 292.88 374.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 294.18 376.52 298.35 370.38 291.27 372.58 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 326 380.6 0 78 18 -region_pindel_outs ",
		label=region_pindel_outs,
		lp="326,382.5",
		pos="e,299.56,369.48 264.46,395.5 272.56,389.5 283.59,381.32 292.88,374.43"];
	cat_all -> somaticfilter	[_draw_="c 7 -#000000 B 7 314.62 350.66 317.5 344.95 322.02 337.61 328 333 330.43 331.12 333.09 329.45 335.86 327.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 336.75 330.24 342.05 325.05 334.67 325.8 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 377 335.6 0 98 21 -pindel_output_summary ",
		label=pindel_output_summary,
		lp="377,337.5",
		pos="e,343.42,324.41 314.62,350.66 317.5,344.95 322.02,337.61 328,333 330.43,331.12 333.09,329.45 335.86,327.95"];
	remove_end_tags	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 314.5 170.5 314.5 189.5 443.5 189.5 443.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 379 177.5 0 113 20 -remove END INFO tags ",
		height=0.27778,
		label="remove END INFO tags",
		pos="379,180",
		rects="314.5,170.5,443.5,189.5",
		width=1.7917];
	reindex	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 348 125.5 348 144.5 410 144.5 410 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 379 132.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="379,135",
		rects="348,125.5,410,144.5",
		width=0.86111];
	remove_end_tags -> reindex	[_draw_="c 7 -#000000 B 4 379 170.71 379 165.59 379 158.85 379 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 381.45 152.78 379 145.78 376.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 385.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="385.5,157.5",
		pos="e,379,144.27 379,170.71 379,165.59 379,158.85 379,152.67"];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 348 215.5 348 234.5 410 234.5 410 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 379 222.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="379,225",
		rects="348,215.5,410,234.5",
		width=0.86111];
	bgzip -> index	[_draw_="c 7 -#000000 B 4 379 260.71 379 255.59 379 248.85 379 242.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 381.45 242.78 379 235.78 376.55 242.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 385.5 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="385.5,247.5",
		pos="e,379,234.27 379,260.71 379,255.59 379,248.85 379,242.67"];
	reindex -> filter	[_draw_="c 7 -#000000 B 4 379 125.71 379 120.59 379 113.85 379 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 381.45 107.78 379 100.78 376.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 385.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="385.5,112.5",
		pos="e,379,99.265 379,125.71 379,120.59 379,113.85 379,107.67"];
	filter -> unfiltered_vcf	[_draw_="c 7 -#000000 B 4 371.29 80.71 365.86 74.88 358.47 66.93 352.13 60.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 354.28 58.83 347.72 55.37 350.69 62.17 ",
		pos="e,346.69,54.265 371.29,80.709 365.86,74.879 358.47,66.934 352.13,60.117"];
	filter -> filtered_vcf	[_draw_="c 7 -#000000 B 4 386.91 80.71 392.46 74.88 400.04 66.93 406.54 60.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 408.02 62.12 411.07 55.36 404.47 58.74 ",
		pos="e,412.12,54.265 386.91,80.709 392.46,74.879 400.04,66.934 406.54,60.117"];
	index -> remove_end_tags	[_draw_="c 7 -#000000 B 4 379 215.71 379 210.59 379 203.85 379 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 381.45 197.78 379 190.78 376.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 385.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="385.5,202.5",
		pos="e,379,189.27 379,215.71 379,210.59 379,203.85 379,197.67"];
	split_interval_list_to_bed -> pindel_cat	[_draw_="c 7 -#000000 B 4 247.35 440.71 248.18 435.59 249.28 428.85 250.29 422.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 252.7 423.06 251.41 415.76 247.87 422.27 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 271.5 425.6 0 43 11 -region_file ",
		label=region_file,
		lp="271.5,427.5",
		pos="e,251.65,414.27 247.35,440.71 248.18,435.59 249.28,428.85 250.29,422.67"];
}