digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 458 522 458 522 0 ",
		bb="0,0,522,458",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 395 8 450 514 450 514 395 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 438 0 84 15 -Workflow Inputs ",
			bb="8,395,514,450",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,440.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 162.5 403.5 162.5 422.5 225.5 422.5 225.5 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 194 410.5 0 47 9 -reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference,
			pos="194,413",
			rects="162.5,403.5,225.5,422.5",
			width=0.875];
		interval_list	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 230 403.5 230 422.5 304 422.5 304 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 267 410.5 0 58 13 -interval_list ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=interval_list,
			pos="267,413",
			rects="230,403.5,304,422.5",
			width=1.0278];
		docm_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 94 403.5 94 422.5 158 422.5 158 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 126 410.5 0 48 8 -docm_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=docm_vcf,
			pos="126,413",
			rects="94,403.5,158,422.5",
			width=0.88889];
		filter_docm_variants	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 390 403.5 390 422.5 506 422.5 506 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 448 410.5 0 100 20 -filter_docm_variants ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=filter_docm_variants,
			pos="448,413",
			rects="390,403.5,506,422.5",
			width=1.6111];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 403.5 16.5 422.5 89.5 422.5 89.5 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 53 410.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="53,413",
			rects="16.5,403.5,89.5,422.5",
			width=1.0139];
		normal_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 308 403.5 308 422.5 386 422.5 386 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 347 410.5 0 62 10 -normal_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_bam,
			pos="347,413",
			rects="308,403.5,386,422.5",
			width=1.0833];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 235 8 235 63 361 63 361 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 289 15 0 92 16 -Workflow Outputs ",
			bb="235,8,361,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="289,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		docm_variants_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 243.5 35.5 243.5 54.5 352.5 54.5 352.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 298 42.5 0 93 17 -docm_variants_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=docm_variants_vcf,
			pos="298,45",
			rects="243.5,35.5,352.5,54.5",
			width=1.5139];
	}
	GATK_haplotype_caller	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 118 350.5 118 369.5 268 369.5 268 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 193 357.5 0 134 26 -HaplotypeCaller (GATK 3.6) ",
		height=0.27778,
		label="HaplotypeCaller (GATK 3.6)",
		pos="193,360",
		rects="118,350.5,268,369.5",
		width=2.0833];
	reference -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 10 193.17 403.68 192.72 398.82 192.22 392.57 192 387 191.84 383 191.88 382 192 378 192 377.91 192.01 377.82 192.01 \
377.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 194.45 377.92 192.34 370.81 189.56 377.68 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 212 380.6 0 40 9 -reference ",
		label=reference,
		lp="212,382.5",
		pos="e,192.41,369.3 193.17,403.68 192.72,398.82 192.22,392.57 192,387 191.84,383 191.88,382 192,378 192,377.91 192.01,377.82 192.01,377.73"];
	interval_list -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 7 259.12 403.7 251.81 396.31 240.36 385.53 229 378 226.43 376.3 223.66 374.67 220.84 373.14 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 222.07 371.02 214.71 370.05 219.86 375.39 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 263.5 380.6 0 47 13 -interval_list ",
		label=interval_list,
		lp="263.5,382.5",
		pos="e,213.36,369.36 259.12,403.7 251.81,396.31 240.36,385.53 229,378 226.43,376.3 223.66,374.67 220.84,373.14"];
	docm_vcf -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 7 130.33 403.7 134.67 396.11 141.98 385.01 151 378 153.38 376.15 155.98 374.48 158.69 372.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 159.48 375.31 164.67 370.01 157.31 370.92 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 170.5 380.6 0 39 8 -docm_vcf ",
		label=docm_vcf,
		lp="170.5,382.5",
		pos="e,166.03,369.34 130.33,403.7 134.67,396.11 141.98,385.01 151,378 153.38,376.15 155.98,374.48 158.69,372.97"];
	docm_filter	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 195.5 170.5 195.5 189.5 400.5 189.5 400.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 298 177.5 0 189 38 -Filter variants from the DoCM detector ",
		height=0.27778,
		label="Filter variants from the DoCM detector",
		pos="298,180",
		rects="195.5,170.5,400.5,189.5",
		width=2.8472];
	filter_docm_variants -> docm_filter	[_draw_="c 7 -#000000 B 10 443.63 403.59 438.89 393.68 432 376.59 432 361 432 361 432 361 432 224 432 208.56 399.35 197.89 366.28 191.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 367.16 188.71 359.82 189.76 366.21 193.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 473 290.6 0 82 20 -filter_docm_variants ",
		label=filter_docm_variants,
		lp="473,292.5",
		pos="e,358.34,189.46 443.63,403.59 438.89,393.68 432,376.59 432,361 432,361 432,361 432,224 432,208.56 399.35,197.89 366.28,191.04"];
	tumor_bam -> docm_filter	[_draw_="c 7 -#000000 B 10 56.55 403.51 60.4 393.52 66 376.35 66 361 66 361 66 361 66 224 66 197 127.5 186.41 187.17 182.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 187.22 184.93 194.06 182.06 186.92 180.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 89 290.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="89,292.5",
		pos="e,195.57,181.97 56.552,403.51 60.401,393.52 66,376.35 66,361 66,361 66,361 66,224 66,197 127.5,186.41 187.17,182.48"];
	tumor_bam -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 7 67.42 403.55 80.9 395.97 101.77 384.97 121 378 127.6 375.61 134.66 373.46 141.68 371.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 142.25 373.95 148.41 369.84 141.02 369.21 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 130.5 380.6 0 19 3 -bam ",
		label=bam,
		lp="130.5,382.5",
		pos="e,149.88,369.46 67.42,403.55 80.895,395.97 101.77,384.97 121,378 127.6,375.61 134.66,373.46 141.68,371.57"];
	normal_bam -> docm_filter	[_draw_="c 7 -#000000 B 13 348.31 403.72 349.8 393.65 352 376.12 352 361 352 361 352 361 352 224 352 212.03 353.1 206.81 345 198 343.56 196.43 \
341.97 195.01 340.26 193.72 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 341.74 191.76 334.5 190.16 339.17 195.93 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 377.5 290.6 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="377.5,292.5",
		pos="e,333.22,189.37 348.31,403.72 349.8,393.65 352,376.12 352,361 352,361 352,361 352,224 352,212.03 353.1,206.81 345,198 343.56,196.43 \
341.97,195.01 340.26,193.72"];
	normal_bam -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 10 328.05 403.51 318.51 399 306.91 393.12 297 387 291.33 383.5 291.11 380.68 285 378 279.48 375.58 273.62 373.5 267.65 \
371.72 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 268.3 369.36 260.9 369.87 267 374.09 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 322.5 380.6 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="322.5,382.5",
		pos="e,259.44,369.47 328.05,403.51 318.51,399 306.91,393.12 297,387 291.33,383.5 291.11,380.68 285,378 279.48,375.58 273.62,373.5 267.65,\
371.72"];
	decompose	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 203 215.5 203 234.5 307 234.5 307 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 255 222.5 0 88 16 -run vt decompose ",
		height=0.27778,
		label="run vt decompose",
		pos="255,225",
		rects="203,215.5,307,234.5",
		width=1.4444];
	decompose -> docm_filter	[_draw_="c 7 -#000000 B 7 258.15 215.53 260.51 210.04 264.16 203.02 269 198 270.28 196.67 271.69 195.41 273.18 194.22 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 274.42 196.34 278.78 190.34 271.63 192.31 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 308.5 200.6 0 79 17 -docm_raw_variants ",
		label=docm_raw_variants,
		lp="308.5,202.5",
		pos="e,280.02,189.47 258.15,215.53 260.51,210.04 264.16,203.02 269,198 270.28,196.67 271.69,195.41 273.18,194.22"];
	bgzip2	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 265.5 125.5 265.5 144.5 330.5 144.5 330.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 298 132.5 0 49 9 -bgzip VCF ",
		height=0.27778,
		label="bgzip VCF",
		pos="298,135",
		rects="265.5,125.5,330.5,144.5",
		width=0.90278];
	docm_filter -> bgzip2	[_draw_="c 7 -#000000 B 4 298 170.71 298 165.59 298 158.85 298 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 300.45 152.78 298 145.78 295.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 304.5 155.6 0 13 4 -file ",
		label=file,
		lp="304.5,157.5",
		pos="e,298,144.27 298,170.71 298,165.59 298,158.85 298,152.67"];
	index2	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 267 80.5 267 99.5 329 99.5 329 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 298 87.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="298,90",
		rects="267,80.5,329,99.5",
		width=0.86111];
	bgzip2 -> index2	[_draw_="c 7 -#000000 B 4 298 125.71 298 120.59 298 113.85 298 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 300.45 107.78 298 100.78 295.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 304.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="304.5,112.5",
		pos="e,298,99.265 298,125.71 298,120.59 298,113.85 298,107.67"];
	bgzip	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 163.5 305.5 163.5 324.5 228.5 324.5 228.5 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 196 312.5 0 49 9 -bgzip VCF ",
		height=0.27778,
		label="bgzip VCF",
		pos="196,315",
		rects="163.5,305.5,228.5,324.5",
		width=0.90278];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 204 260.5 204 279.5 266 279.5 266 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 235 267.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="235,270",
		rects="204,260.5,266,279.5",
		width=0.86111];
	bgzip -> index	[_draw_="c 7 -#000000 B 4 203.52 305.71 208.7 300 215.72 292.26 221.82 285.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 223.6 287.22 226.49 280.39 219.97 283.93 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 224.5 290.6 0 13 3 -vcf ",
		label=vcf,
		lp="224.5,292.5",
		pos="e,227.5,279.27 203.52,305.71 208.7,300 215.72,292.26 221.82,285.54"];
	index2 -> docm_variants_vcf	[_draw_="c 7 -#000000 B 4 298 80.71 298 75.59 298 68.85 298 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 300.45 62.78 298 55.78 295.55 62.78 ",
		pos="e,298,54.265 298,80.709 298,75.593 298,68.848 298,62.666"];
	index -> decompose	[_draw_="c 7 -#000000 B 4 238.86 260.71 241.35 255.36 244.67 248.22 247.65 241.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 249.79 243.02 250.52 235.64 245.34 240.95 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 252.5 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="252.5,247.5",
		pos="e,251.16,234.27 238.86,260.71 241.35,255.36 244.67,248.22 247.65,241.81"];
	GATK_haplotype_caller -> bgzip	[_draw_="c 7 -#000000 B 4 193.58 350.71 193.94 345.59 194.41 338.85 194.84 332.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 197.27 332.93 195.32 325.78 192.39 332.59 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 200.5 335.6 0 13 4 -file ",
		label=file,
		lp="200.5,337.5",
		pos="e,195.42,324.27 193.58,350.71 193.94,345.59 194.41,338.85 194.84,332.67"];
}