digraph workflow {
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	edge [arrowsize=0.7,
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		bait_intervals	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 466.5 178.5 466.5 197.5 549.5 197.5 549.5 178.5 ",
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		normal_cram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 867.5 178.5 867.5 197.5 948.5 197.5 948.5 178.5 ",
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			width=1.125];
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			rects="752.5,178.5,863.5,197.5",
			width=1.5417];
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			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 984 185.5 0 47 9 -reference ",
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			pos="984,188",
			rects="952.5,178.5,1015.5,197.5",
			width=0.875];
		tumor_cram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1020 178.5 1020 197.5 1096 197.5 1096 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1058 185.5 0 60 10 -tumor_cram ",
			fillcolor="#94DDF4",
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			label=tumor_cram,
			pos="1058,188",
			rects="1020,178.5,1096,197.5",
			width=1.0556];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 8 8 63 1389 63 1389 8 ",
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			bb="8,8,1389,63",
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			labelloc=b,
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			lp="62,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
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		normal_antitarget_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 35.5 16.5 54.5 171.5 54.5 171.5 35.5 ",
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			fillcolor="#94DDF4",
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			pos="94,45",
			rects="16.5,35.5,171.5,54.5",
			width=2.1528];
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			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 223 42.5 0 78 16 -intervals_target ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=intervals_target,
			pos="223,45",
			rects="176,35.5,270,54.5",
			width=1.3056];
		tumor_bin_level_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 274 35.5 274 54.5 402 54.5 402 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 338 42.5 0 112 22 -tumor_bin_level_ratios ",
			fillcolor="#94DDF4",
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			label=tumor_bin_level_ratios,
			pos="338,45",
			rects="274,35.5,402,54.5",
			width=1.7778];
		normal_target_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 406 35.5 406 54.5 542 54.5 542 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 474 42.5 0 120 22 -normal_target_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_target_coverage,
			pos="474,45",
			rects="406,35.5,542,54.5",
			width=1.8889];
		cn_diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 546 35.5 546 54.5 620 54.5 620 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 583 42.5 0 58 10 -cn_diagram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_diagram,
			pos="583,45",
			rects="546,35.5,620,54.5",
			width=1.0278];
		tumor_antitarget_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 624.5 35.5 624.5 54.5 773.5 54.5 773.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 699 42.5 0 133 25 -tumor_antitarget_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_antitarget_coverage,
			pos="699,45",
			rects="624.5,35.5,773.5,54.5",
			width=2.0694];
		tumor_segmented_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 777.5 35.5 777.5 54.5 916.5 54.5 916.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 847 42.5 0 123 22 -tumor_segmented_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_segmented_ratios,
			pos="847,45",
			rects="777.5,35.5,916.5,54.5",
			width=1.9306];
		cn_scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 920.5 35.5 920.5 54.5 1011.5 54.5 1011.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 966 42.5 0 75 15 -cn_scatter_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_scatter_plot,
			pos="966,45",
			rects="920.5,35.5,1011.5,54.5",
			width=1.2639];
		reference_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1015.5 35.5 1015.5 54.5 1128.5 54.5 1128.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1072 42.5 0 97 18 -reference_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_coverage,
			pos="1072,45",
			rects="1015.5,35.5,1128.5,54.5",
			width=1.5694];
		tumor_target_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1132.5 35.5 1132.5 54.5 1263.5 54.5 1263.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1198 42.5 0 115 21 -tumor_target_coverage ",
			fillcolor="#94DDF4",
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			label=tumor_target_coverage,
			pos="1198,45",
			rects="1132.5,35.5,1263.5,54.5",
			width=1.8194];
		intervals_antitarget	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1267.5 35.5 1267.5 54.5 1380.5 54.5 1380.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1324 42.5 0 97 20 -intervals_antitarget ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=intervals_antitarget,
			pos="1324,45",
			rects="1267.5,35.5,1380.5,54.5",
			width=1.5694];
	}
	run_cnvkit	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 665 80.5 665 99.5 733 99.5 733 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 699 87.5 0 52 10 -run_cnvkit ",
		height=0.27778,
		label=run_cnvkit,
		pos="699,90",
		rects="665,80.5,733,99.5",
		width=0.94444];
	access -> run_cnvkit	[_draw_="c 7 -#000000 B 7 442.12 178.8 450.87 165.47 470.03 139.15 493 125 519.75 108.53 604.73 98.77 656.81 94.19 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 656.92 96.64 663.68 93.6 656.5 91.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 507.5 133.1 0 29 6 -access ",
		label=access,
		lp="507.5,135",
		pos="e,665.19,93.475 442.12,178.8 450.87,165.47 470.03,139.15 493,125 519.75,108.53 604.73,98.774 656.81,94.192"];
	bait_intervals -> run_cnvkit	[_draw_="c 7 -#000000 B 7 509.87 178.72 513.35 165.26 522.16 138.76 540 125 557.94 111.15 615.94 101.3 656.67 95.88 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 656.96 98.31 663.58 94.98 656.33 93.45 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 567.5 133.1 0 55 14 -bait_intervals ",
		label=bait_intervals,
		lp="567.5,135",
		pos="e,665.09,94.789 509.87,178.72 513.35,165.26 522.16,138.76 540,125 557.94,111.15 615.94,101.3 656.67,95.879"];
	scatter_plot -> run_cnvkit	[_draw_="c 7 -#000000 B 7 590.99 178.64 591.42 165.56 594.15 140.16 608 125 620.83 110.96 640 102.7 657.45 97.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 657.67 100.31 663.85 96.21 656.46 95.56 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 632.5 133.1 0 49 12 -scatter_plot ",
		label=scatter_plot,
		lp="632.5,135",
		pos="e,665.32,95.84 590.99,178.64 591.42,165.56 594.15,140.16 608,125 620.83,110.96 640,102.7 657.45,97.84"];
	diagram -> run_cnvkit	[_draw_="c 7 -#000000 B 7 659.53 178.53 657.78 166.15 656.02 142.68 664 125 667.48 117.29 673.57 110.42 679.71 104.91 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 681.27 106.8 685.1 100.45 678.14 103.03 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 681 133.1 0 34 7 -diagram ",
		label=diagram,
		lp="681,135",
		pos="e,686.26,99.487 659.53,178.53 657.78,166.15 656.02,142.68 664,125 667.48,117.29 673.57,110.42 679.71,104.91"];
	method -> run_cnvkit	[_draw_="c 7 -#000000 B 7 716.1 178.65 711.54 170.4 705.01 157.28 702 145 698.99 132.73 698.32 118.43 698.36 107.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 700.8 107.75 698.5 100.7 695.91 107.65 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 718 133.1 0 32 6 -method ",
		label=method,
		lp="718,135",
		pos="e,698.53,99.187 716.1,178.65 711.54,170.4 705.01,157.28 702,145 698.99,132.73 698.32,118.43 698.36,107.64"];
	normal_cram_to_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 822.5 125.5 822.5 144.5 975.5 144.5 975.5 125.5 ",
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		height=0.27778,
		label="samtools view cram to bam",
		pos="899,135",
		rects="822.5,125.5,975.5,144.5",
		width=2.125];
	normal_cram -> normal_cram_to_bam	[_draw_="c 7 -#000000 B 4 906.51 178.58 905.27 171.52 903.45 161.24 901.92 152.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 904.35 152.22 900.72 145.76 899.53 153.07 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 913.5 155.6 0 21 4 -cram ",
		label=cram,
		lp="913.5,157.5",
		pos="e,900.46,144.26 906.51,178.58 905.27,171.52 903.45,161.24 901.92,152.55"];
	drop_low_coverage -> run_cnvkit	[_draw_="c 7 -#000000 B 10 789.72 178.56 775.39 171.25 755.66 159.56 742 145 735.06 137.6 736.97 133.2 731 125 725.96 118.07 719.62 111.06 \
713.92 105.22 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 715.84 103.68 709.15 100.48 712.38 107.15 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 781.5 133.1 0 79 17 -drop_low_coverage ",
		label=drop_low_coverage,
		lp="781.5,135",
		pos="e,708.07,99.409 789.72,178.56 775.39,171.25 755.66,159.56 742,145 735.06,137.6 736.97,133.2 731,125 725.96,118.07 719.62,111.06 \
713.92,105.22"];
	reference -> run_cnvkit	[_draw_="c 7 -#000000 B 7 985.69 178.87 987.92 165.64 990.07 139.47 976 125 959.92 108.47 814.52 97.72 741.06 93.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 741.55 90.87 734.41 92.9 741.26 95.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1005 133.1 0 40 9 -reference ",
		label=reference,
		lp="1005,135",
		pos="e,732.9,92.813 985.69,178.87 987.92,165.64 990.07,139.47 976,125 959.92,108.47 814.52,97.718 741.06,93.296"];
	reference -> normal_cram_to_bam	[_draw_="c 7 -#000000 B 7 968.83 178.62 960.3 173.85 949.49 167.7 940 162 933 157.79 925.42 153.04 918.7 148.77 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 920.32 146.89 913.1 145.18 917.67 151.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 960 155.6 0 40 9 -reference ",
		label=reference,
		lp="960,157.5",
		pos="e,911.83,144.36 968.83,178.62 960.3,173.85 949.49,167.7 940,162 933,157.79 925.42,153.04 918.7,148.77"];
	tumor_cram_to_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1028.5 125.5 1028.5 144.5 1181.5 144.5 1181.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1105 132.5 0 137 25 -samtools view cram to bam ",
		height=0.27778,
		label="samtools view cram to bam",
		pos="1105,135",
		rects="1028.5,125.5,1181.5,144.5",
		width=2.125];
	reference -> tumor_cram_to_bam	[_draw_="c 7 -#000000 B 7 995.48 178.66 1006.44 171.03 1023.66 159.92 1040 153 1045.46 150.69 1051.32 148.62 1057.21 146.79 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1057.72 149.2 1063.75 144.88 1056.35 144.49 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1060 155.6 0 40 9 -reference ",
		label=reference,
		lp="1060,157.5",
		pos="e,1065.2,144.45 995.48,178.66 1006.4,171.03 1023.7,159.92 1040,153 1045.5,150.69 1051.3,148.62 1057.2,146.79"];
	tumor_cram -> tumor_cram_to_bam	[_draw_="c 7 -#000000 B 4 1065.76 178.58 1072.81 170.93 1083.36 159.48 1091.74 150.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1093.42 152.19 1096.36 145.38 1089.81 148.87 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1098.5 155.6 0 21 4 -cram ",
		label=cram,
		lp="1098.5,157.5",
		pos="e,1097.4,144.26 1065.8,178.58 1072.8,170.93 1083.4,159.48 1091.7,150.39"];
	run_cnvkit -> normal_antitarget_coverage	[_draw_="c 7 -#000000 B 7 665.11 89.2 581.5 89.3 358.79 87.06 175 63 162.5 61.36 149.05 58.85 136.77 56.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 137.33 53.87 129.97 54.78 136.29 58.66 ",
		pos="e,128.49,54.456 665.11,89.204 581.5,89.3 358.79,87.065 175,63 162.5,61.363 149.05,58.851 136.77,56.256"];
	run_cnvkit -> intervals_target	[_draw_="c 7 -#000000 B 7 665.25 88.07 578.4 85.49 348.75 77.49 274 63 266.76 61.6 259.12 59.44 252.03 57.13 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 252.86 54.82 245.44 54.87 251.27 59.45 ",
		pos="e,244.01,54.375 665.25,88.07 578.4,85.494 348.75,77.486 274,63 266.76,61.596 259.12,59.438 252.03,57.125"];
	run_cnvkit -> tumor_bin_level_ratios	[_draw_="c 7 -#000000 B 7 665.39 87.73 610.69 85.28 499.17 78.68 406 63 396.06 61.33 385.44 58.96 375.61 56.52 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 376.43 54.2 369.04 54.84 375.22 58.95 ",
		pos="e,367.58,54.465 665.39,87.728 610.69,85.276 499.17,78.68 406,63 396.06,61.327 385.44,58.958 375.61,56.518"];
	run_cnvkit -> normal_target_coverage	[_draw_="c 7 -#000000 B 7 665.16 83.88 634.08 79.03 586.8 71.27 546 63 536.26 61.03 525.84 58.69 516.03 56.4 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 516.81 54.07 509.44 54.84 515.68 58.83 ",
		pos="e,507.96,54.488 665.16,83.881 634.08,79.031 586.8,71.274 546,63 536.26,61.026 525.84,58.692 516.03,56.398"];
	run_cnvkit -> cn_diagram	[_draw_="c 7 -#000000 B 7 673.52 80.59 658.95 75.67 640.36 69.22 624 63 619.48 61.28 614.71 59.38 610.08 57.5 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 611.31 55.35 603.91 54.94 609.44 59.88 ",
		pos="e,602.51,54.366 673.52,80.586 658.95,75.668 640.36,69.221 624,63 619.48,61.281 614.71,59.382 610.08,57.496"];
	run_cnvkit -> tumor_antitarget_coverage	[_draw_="c 7 -#000000 B 4 699 80.71 699 75.59 699 68.85 699 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 701.45 62.78 699 55.78 696.55 62.78 ",
		pos="e,699,54.265 699,80.709 699,75.593 699,68.848 699,62.666"];
	run_cnvkit -> tumor_segmented_ratios	[_draw_="c 7 -#000000 B 4 728.24 80.5 751.65 73.7 784.64 64.12 809.91 56.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 810.33 59.21 816.37 54.9 808.96 54.5 ",
		pos="e,817.82,54.478 728.24,80.505 751.65,73.702 784.64,64.118 809.91,56.776"];
	run_cnvkit -> cn_scatter_plot	[_draw_="c 7 -#000000 B 7 733 87.22 776.22 84.43 852.93 77.75 917 63 923.54 61.49 930.43 59.42 936.9 57.25 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 937.6 59.6 943.4 54.97 935.98 54.97 ",
		pos="e,944.83,54.464 733,87.215 776.22,84.43 852.93,77.754 917,63 923.54,61.494 930.43,59.424 936.9,57.246"];
	run_cnvkit -> reference_coverage	[_draw_="c 7 -#000000 B 7 732.63 88.33 790.26 86.72 911.4 81.25 1012 63 1020.64 61.43 1029.82 59.15 1038.34 56.77 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1038.77 59.2 1044.81 54.89 1037.41 54.49 ",
		pos="e,1046.3,54.471 732.63,88.332 790.26,86.715 911.4,81.252 1012,63 1020.6,61.433 1029.8,59.153 1038.3,56.769"];
	run_cnvkit -> tumor_target_coverage	[_draw_="c 7 -#000000 B 7 732.95 89.03 805.88 88.64 982.79 85.24 1129 63 1139.39 61.42 1150.51 59.01 1160.73 56.49 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1161.04 58.94 1167.22 54.84 1159.83 54.19 ",
		pos="e,1168.7,54.467 732.95,89.029 805.88,88.637 982.79,85.244 1129,63 1139.4,61.419 1150.5,59.006 1160.7,56.491"];
	run_cnvkit -> intervals_antitarget	[_draw_="c 7 -#000000 B 7 732.73 88.47 838.19 86.63 1160.78 79.78 1264 63 1272.91 61.55 1282.38 59.24 1291.1 56.79 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1291.71 59.17 1297.73 54.84 1290.32 54.46 ",
		pos="e,1299.2,54.417 732.73,88.466 838.19,86.635 1160.8,79.775 1264,63 1272.9,61.552 1282.4,59.245 1291.1,56.791"];
	normal_cram_to_bam -> run_cnvkit	[_draw_="c 7 -#000000 B 4 859.49 125.5 825.23 118.14 775.82 107.52 740.89 100.01 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 741.62 97.66 734.26 98.58 740.59 102.45 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 841.5 110.6 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="841.5,112.5",
		pos="e,732.78,98.263 859.49,125.5 825.23,118.14 775.82,107.52 740.89,100.01"];
	tumor_cram_to_bam -> run_cnvkit	[_draw_="c 7 -#000000 B 7 1073.47 125.55 1050.06 119.64 1017.26 112.09 988 108 900.88 95.84 797.81 92.36 741.31 91.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 741.54 88.93 734.5 91.27 741.46 93.83 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1059 110.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="1059,112.5",
		pos="e,732.99,91.243 1073.5,125.55 1050.1,119.64 1017.3,112.09 988,108 900.88,95.837 797.81,92.359 741.31,91.376"];
}