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			width=2.6111];
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	pvacseq	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2009 125.5 2009 144.5 2087 144.5 2087 125.5 ",
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		height=0.27778,
		label="run pVACseq",
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	sample_name -> pvacseq	[_draw_="c 7 -#000000 B 13 3177.08 403.66 3171.75 393.81 3164 376.77 3164 361 3164 361 3164 361 3164 179 3164 108.71 3078 159.42 3008 153 \
2827.72 136.47 2262.26 135.75 2095.03 135.91 ",
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		label=sample_name,
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	add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 3602.5 260.5 3602.5 279.5 3745.5 279.5 3745.5 260.5 ",
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		label="add expression info to vcf",
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		width=1.9861];
	sample_name -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 7 3190.2 403.74 3206.56 387.71 3245.06 352.28 3284 333 3337.13 306.69 3496.49 287.63 3594.29 278.03 ",
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		label=sample_name,
		lp="3313,337.5",
		pos="e,3602.7,277.22 3190.2,403.74 3206.6,387.71 3245.1,352.28 3284,333 3337.1,306.69 3496.5,287.63 3594.3,278.03"];
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		fillcolor="#F3CEA1",
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		label="bam_readcount workflow",
		pos="3480,360",
		rects="3410,350.5,3550,369.5",
		width=1.9444];
	sample_name -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 7 3202.31 403.62 3210.48 400.52 3220.07 397.22 3229 395 3260.85 387.07 3340.92 376.83 3402.13 369.66 ",
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		label=sample,
		lp="3349.5,382.5",
		pos="e,3410.3,368.72 3202.3,403.62 3210.5,400.52 3220.1,397.22 3229,395 3260.9,387.07 3340.9,376.83 3402.1,369.66"];
	add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 3795.5 215.5 3795.5 234.5 3938.5 234.5 3938.5 215.5 ",
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		height=0.27778,
		label="add expression info to vcf",
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		width=1.9861];
	sample_name -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 16 3200.81 403.59 3209.25 400.24 3219.44 396.76 3229 395 3277.3 386.08 3622.07 391.3 3671 387 3707.76 383.77 3835 \
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		label=sample_name,
		lp="3864,315",
		pos="e,3855.8,234.21 3200.8,403.59 3209.3,400.24 3219.4,396.76 3229,395 3277.3,386.08 3622.1,391.3 3671,387 3707.8,383.77 3835,397.9 \
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	add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 3391 305.5 3391 324.5 3635 324.5 3635 305.5 ",
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		fillcolor="#F3CEA1",
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		label="Add snv and indel bam-readcount files to a vcf",
		pos="3513,315",
		rects="3391,305.5,3635,324.5",
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	sample_name -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 3197.93 403.71 3230.19 387.32 3306 350.8 3374 333 3384.79 330.18 3396.17 327.82 3407.59 325.85 ",
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		label=sample_name,
		lp="3348,360",
		pos="e,3415.9,324.49 3197.9,403.71 3230.2,387.32 3306,350.8 3374,333 3384.8,330.18 3396.2,327.82 3407.6,325.85"];
	downstream_sequence_length -> pvacseq	[_draw_="c 7 -#000000 B 10 1980.26 403.7 1980.56 393.6 1981 376.05 1981 361 1981 361 1981 361 1981 179 1981 164.19 1992.74 154.24 2006.39 \
147.69 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2007.25 149.98 2012.72 144.98 2005.32 145.48 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2044 268.1 0 126 26 -downstream_sequence_length ",
		label=downstream_sequence_length,
		lp="2044,270",
		pos="e,2014.1,144.38 1980.3,403.7 1980.6,393.6 1981,376.05 1981,361 1981,361 1981,361 1981,179 1981,164.19 1992.7,154.24 2006.4,147.69"];
	expression_tool -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 13 3851.2 403.56 3842.28 400.41 3831.76 397.09 3822 395 3787.49 387.6 3776.11 399.21 3743 387 3710.03 374.85 3695.18 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3673.45 287.87 3672.07 280.58 3668.6 287.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3710 335.6 0 64 15 -expression_tool ",
		label=expression_tool,
		lp="3710,337.5",
		pos="e,3672.3,279.08 3851.2,403.56 3842.3,400.41 3831.8,397.09 3822,395 3787.5,387.6 3776.1,399.21 3743,387 3710,374.85 3695.2,372.65 \
3678,342 3668.6,325.23 3669.2,302.6 3671,287.44"];
	expression_tool -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 10 3880.95 403.74 3889.23 394.23 3901 377.77 3901 361 3901 361 3901 361 3901 269 3901 257.47 3893.39 247.23 3885.37 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3887.32 238.08 3880.42 235.35 3884.11 241.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3933 313.1 0 64 15 -expression_tool ",
		label=expression_tool,
		lp="3933,315",
		pos="e,3879.3,234.36 3880.9,403.74 3889.2,394.23 3901,377.77 3901,361 3901,361 3901,361 3901,269 3901,257.47 3893.4,247.23 3885.4,239.63"];
	top_score_metric -> pvacseq	[_draw_="c 7 -#000000 B 10 2116.74 403.7 2116.44 393.6 2116 376.05 2116 361 2116 361 2116 361 2116 179 2116 164.15 2104.27 154.22 2090.56 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2091.59 145.46 2084.19 144.98 2089.68 149.97 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2151 268.1 0 70 16 -top_score_metric ",
		label=top_score_metric,
		lp="2151,270",
		pos="e,2082.8,144.39 2116.7,403.7 2116.4,393.6 2116,376.05 2116,361 2116,361 2116,361 2116,179 2116,164.15 2104.3,154.22 2090.6,147.68"];
	net_chop_threshold -> pvacseq	[_draw_="c 7 -#000000 B 10 2223.35 403.62 2218.32 393.74 2211 376.68 2211 361 2211 361 2211 361 2211 179 2211 154.84 2143.21 143.96 2095.07 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2095.33 136.84 2088.14 138.64 2094.88 141.72 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2251.5 268.1 0 81 18 -net_chop_threshold ",
		label=net_chop_threshold,
		lp="2251.5,270",
		pos="e,2086.6,138.5 2223.4,403.62 2218.3,393.74 2211,376.68 2211,361 2211,361 2211,361 2211,179 2211,154.84 2143.2,143.96 2095.1,139.28"];
	normal_vaf -> pvacseq	[_draw_="c 7 -#000000 B 10 2320.85 403.84 2317.29 393.88 2312 376.46 2312 361 2312 361 2312 361 2312 179 2312 157.31 2171.43 144.38 2095.44 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2335 268.1 0 46 10 -normal_vaf ",
		label=normal_vaf,
		lp="2335,270",
		pos="e,2087,138.38 2320.8,403.84 2317.3,393.88 2312,376.46 2312,361 2312,361 2312,361 2312,179 2312,157.31 2171.4,144.38 2095.4,138.97"];
	epitope_lengths_class_ii -> pvacseq	[_draw_="c 7 -#000000 B 10 2421 403.52 2410.42 394.32 2396 378.56 2396 361 2396 361 2396 361 2396 179 2396 149.05 2190.32 139.73 2095.21 \
137.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2095.48 134.59 2088.42 136.84 2095.35 139.48 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2446 268.1 0 100 24 -epitope_lengths_class_ii ",
		label=epitope_lengths_class_ii,
		lp="2446,270",
		pos="e,2086.9,136.8 2421,403.52 2410.4,394.32 2396,378.56 2396,361 2396,361 2396,361 2396,179 2396,149.05 2190.3,139.73 2095.2,137.03"];
	detect_variants_vcf -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 4 3475.83 403.58 3476.52 396.52 3477.53 386.24 3478.38 377.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3480.8 377.98 3479.04 370.77 3475.92 377.5 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3484.5 380.6 0 13 3 -vcf ",
		label=vcf,
		lp="3484.5,382.5",
		pos="e,3479.2,369.26 3475.8,403.58 3476.5,396.52 3477.5,386.24 3478.4,377.55"];
	tdna_vaf -> pvacseq	[_draw_="c 7 -#000000 B 10 2529.9 403.56 2525.46 393.62 2519 376.51 2519 361 2519 361 2519 361 2519 179 2519 136.75 2214.58 134.64 2095.21 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2095.44 132.99 2088.46 135.49 2095.48 137.89 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2537 268.1 0 36 8 -tdna_vaf ",
		label=tdna_vaf,
		lp="2537,270",
		pos="e,2086.9,135.5 2529.9,403.56 2525.5,393.62 2519,376.51 2519,361 2519,361 2519,361 2519,179 2519,136.75 2214.6,134.64 2095.2,135.44"];
	net_chop_method -> pvacseq	[_draw_="c 7 -#000000 B 13 2612.05 403.74 2603.77 394.23 2592 377.77 2592 361 2592 361 2592 361 2592 179 2592 130.06 2533.47 159.76 2485 \
153 2411 142.68 2192.5 138.18 2095.41 136.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2095.51 134.2 2088.48 136.54 2095.44 139.1 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2628.5 268.1 0 73 15 -net_chop_method ",
		label=net_chop_method,
		lp="2628.5,270",
		pos="e,2087,136.52 2612.1,403.74 2603.8,394.23 2592,377.77 2592,361 2592,361 2592,361 2592,179 2592,130.06 2533.5,159.76 2485,153 2411,\
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	exclude_nas -> pvacseq	[_draw_="c 7 -#000000 B 10 2709.26 403.77 2703.04 394.02 2694 377.09 2694 361 2694 361 2694 361 2694 179 2694 148.97 2243.8 139.11 2095.06 \
136.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2095.51 134.23 2088.47 136.57 2095.43 139.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2719.5 268.1 0 51 11 -exclude_nas ",
		label=exclude_nas,
		lp="2719.5,270",
		pos="e,2087,136.54 2709.3,403.77 2703,394.02 2694,377.09 2694,361 2694,361 2694,361 2694,179 2694,148.97 2243.8,139.11 2095.1,136.67"];
	readcount_minimum_base_quality -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 7 3340.14 403.55 3356.74 396.06 3382.13 385.22 3405 378 3412.56 375.61 3420.65 373.42 3428.61 371.46 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3440.5 380.6 0 71 16 -min_base_quality ",
		label=min_base_quality,
		lp="3440.5,382.5",
		pos="e,3436.8,369.5 3340.1,403.55 3356.7,396.06 3382.1,385.22 3405,378 3412.6,375.61 3420.6,373.42 3428.6,371.46"];
	alleles -> pvacseq	[_draw_="c 7 -#000000 B 10 2777.9 403.56 2773.46 393.62 2767 376.51 2767 361 2767 361 2767 361 2767 179 2767 145.24 2255.09 137.84 2095.15 \
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		label=alleles,
		lp="2781,270",
		pos="e,2086.9,136.27 2777.9,403.56 2773.5,393.62 2767,376.51 2767,361 2767,361 2767,361 2767,179 2767,145.24 2255.1,137.84 2095.2,136.35"];
	transcript_expression_file -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 10 3990.08 403.66 3984.75 393.81 3977 376.77 3977 361 3977 361 3977 361 3977 269 3977 250.61 3963.5 239.83 3945.96 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4007.5 313.1 0 61 15 -expression_file ",
		label=expression_file,
		lp="4007.5,315",
		pos="e,3938.2,231.17 3990.1,403.66 3984.8,393.81 3977,376.77 3977,361 3977,361 3977,361 3977,269 3977,250.61 3963.5,239.83 3946,233.58"];
	percentile_threshold -> pvacseq	[_draw_="c 7 -#000000 B 10 2853.02 403.58 2839.05 394.95 2821 380.09 2821 361 2821 361 2821 361 2821 179 2821 142.46 2263.18 136.97 2095.26 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2095.39 133.7 2088.38 136.11 2095.36 138.6 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2863.5 268.1 0 85 20 -percentile_threshold ",
		label=percentile_threshold,
		lp="2863.5,270",
		pos="e,2086.9,136.11 2853,403.58 2839.1,394.95 2821,380.09 2821,361 2821,361 2821,361 2821,179 2821,142.46 2263.2,136.97 2095.3,136.15"];
	trna_cov -> pvacseq	[_draw_="c 7 -#000000 B 10 2952.77 403.79 2944.19 394.33 2932 377.91 2932 361 2932 361 2932 361 2932 179 2932 136.72 2278.37 135.36 2095.2 \
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		label=trna_cov,
		lp="2949.5,270",
		pos="e,2086.8,135.83 2952.8,403.79 2944.2,394.33 2932,377.91 2932,361 2932,361 2932,361 2932,179 2932,136.72 2278.4,135.36 2095.2,135.81"];
	add_vep_fields_to_table	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 4330.5 80.5 4330.5 99.5 4487.5 99.5 4487.5 80.5 ",
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		height=0.27778,
		label="add VEP annotation to report",
		pos="4409,90",
		rects="4330.5,80.5,4487.5,99.5",
		width=2.1806];
	vep_to_table_fields -> add_vep_fields_to_table	[_draw_="c 7 -#000000 B 13 4790.46 403.57 4780.37 400.57 4768.72 397.36 4758 395 4709.47 384.32 4537 410.69 4537 361 4537 361 4537 361 4537 \
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		label=vep_fields,
		lp="4558,247.5",
		pos="e,4464.4,99.451 4790.5,403.57 4780.4,400.57 4768.7,397.36 4758,395 4709.5,384.32 4537,410.69 4537,361 4537,361 4537,361 4537,134 \
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	normal_cov -> pvacseq	[_draw_="c 7 -#000000 B 10 3023.77 403.79 3015.19 394.33 3003 377.91 3003 361 3003 361 3003 361 3003 179 3003 133.03 2287.54 134.42 2095.15 \
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		label=normal_cov,
		lp="3026.5,270",
		pos="e,2086.9,135.68 3023.8,403.79 3015.2,394.33 3003,377.91 3003,361 3003,361 3003,361 3003,179 3003,133.03 2287.5,134.42 2095.1,135.63"];
	readcount_minimum_mapping_quality -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 7 3599.84 403.57 3581.81 399.23 3560.1 393.49 3541 387 3529.07 382.95 3516.19 377.61 3505.36 372.82 ",
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		label=min_mapping_quality,
		lp="3584.5,382.5",
		pos="e,3497.9,369.46 3599.8,403.57 3581.8,399.23 3560.1,393.49 3541,387 3529.1,382.95 3516.2,377.61 3505.4,372.82"];
	expn_val -> pvacseq	[_draw_="c 7 -#000000 B 13 3097.47 403.5 3090.67 393.78 3081 377.12 3081 361 3081 361 3081 361 3081 179 3081 111.34 2998.35 159.45 2931 153 \
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		label=expn_val,
		lp="3099,270",
		pos="e,2086.8,135.96 3097.5,403.5 3090.7,393.78 3081,377.12 3081,361 3081,361 3081,361 3081,179 3081,111.34 2998.4,159.45 2931,153 2766.5,\
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	minimum_fold_change -> pvacseq	[_draw_="c 7 -#000000 B 16 345.58 403.52 357.43 400.4 371.28 397.12 384 395 417.52 389.4 688 394.99 688 361 688 361 688 361 688 179 688 104.32 \
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		label=minimum_fold_change,
		lp="734,270",
		pos="e,2009,135.81 345.58,403.52 357.43,400.4 371.28,397.12 384,395 417.52,389.4 688,394.99 688,361 688,361 688,361 688,179 688,104.32 \
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	maximum_transcript_support_level -> pvacseq	[_draw_="c 7 -#000000 B 16 522.72 403.52 539.9 400.45 559.82 397.19 578 395 608.68 391.3 854 391.9 854 361 854 361 854 361 854 179 854 95.97 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 925 268.1 0 142 32 -maximum_transcript_support_level ",
		label=maximum_transcript_support_level,
		lp="925,270",
		pos="e,2009,136.02 522.72,403.52 539.9,400.45 559.82,397.19 578,395 608.68,391.3 854,391.9 854,361 854,361 854,361 854,179 854,95.97 \
956.22,159.49 1039,153 1229.4,138.07 1827.6,136.24 2000.7,136.03"];
	n_threads -> pvacseq	[_draw_="c 7 -#000000 B 16 625.64 403.66 632.25 400.32 640.3 396.84 648 395 690.2 384.92 1037 404.39 1037 361 1037 361 1037 361 1037 179 \
1037 126.6 1099.98 159.31 1152 153 1318.63 132.8 1840.86 134.57 2000.91 135.63 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1057.5 268.1 0 41 9 -n_threads ",
		label=n_threads,
		lp="1057.5,270",
		pos="e,2009.1,135.69 625.64,403.66 632.25,400.32 640.3,396.84 648,395 690.2,384.92 1037,404.39 1037,361 1037,361 1037,361 1037,179 1037,\
126.6 1100,159.31 1152,153 1318.6,132.8 1840.9,134.57 2000.9,135.63"];
	phased_proximal_variants_vcf -> pvacseq	[_draw_="c 7 -#000000 B 16 767.63 403.52 783.09 400.28 801.33 396.92 818 395 867.26 389.34 992.57 397.65 1041 387 1070.18 380.58 1103 390.88 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1164 268.1 0 122 28 -phased_proximal_variants_vcf ",
		label=phased_proximal_variants_vcf,
		lp="1164,270",
		pos="e,2009.2,135.7 767.63,403.52 783.09,400.28 801.33,396.92 818,395 867.26,389.34 992.57,397.65 1041,387 1070.2,380.58 1103,390.88 \
1103,361 1103,361 1103,361 1103,179 1103,133.56 1809.5,134.55 2000.7,135.65"];
	epitope_lengths_class_i -> pvacseq	[_draw_="c 7 -#000000 B 16 914.82 403.58 927.43 400.36 942.33 396.98 956 395 987.56 390.42 1241 392.89 1241 361 1241 361 1241 361 1241 179 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1289.5 268.1 0 97 23 -epitope_lengths_class_i ",
		label=epitope_lengths_class_i,
		lp="1289.5,270",
		pos="e,2009.4,135.94 914.82,403.58 927.43,400.36 942.33,396.98 956,395 987.56,390.42 1241,392.89 1241,361 1241,361 1241,361 1241,179 \
1241,126.6 1304,159.45 1356,153 1481.2,137.47 1866.3,135.98 2000.9,135.94"];
	fasta_size -> pvacseq	[_draw_="c 7 -#000000 B 19 1003.64 403.65 1010.25 400.32 1018.3 396.83 1026 395 1073.38 383.73 1196.77 393.78 1245 387 1292.61 380.31 1350 \
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		label=fasta_size,
		lp="1371,270",
		pos="e,2009,136.16 1003.6,403.65 1010.3,400.32 1018.3,396.83 1026,395 1073.4,383.73 1196.8,393.78 1245,387 1292.6,380.31 1350,409.08 \
1350,361 1350,361 1350,361 1350,179 1350,150.34 1381,159.28 1409,153 1466.1,140.19 1862.6,136.95 2000.7,136.2"];
	prediction_algorithms -> pvacseq	[_draw_="c 7 -#000000 B 16 107.96 403.57 118.93 400.64 131.48 397.48 143 395 187.29 385.48 344 406.3 344 361 344 361 344 361 344 179 344 \
116.15 420.45 159.14 483 153 637 137.88 1756.12 136.21 2000.82 136.02 ",
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		label=prediction_algorithms,
		lp="388.5,270",
		pos="e,2009.1,136.02 107.96,403.57 118.93,400.64 131.48,397.48 143,395 187.29,385.48 344,406.3 344,361 344,361 344,361 344,179 344,116.15 \
420.45,159.14 483,153 637,137.88 1756.1,136.21 2000.8,136.02"];
	variants_to_table	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 4329.5 125.5 4329.5 144.5 4488.5 144.5 4488.5 125.5 ",
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		height=0.27778,
		label="SelectVariants (GATK 4.1.8.1)",
		pos="4409,135",
		rects="4329.5,125.5,4488.5,144.5",
		width=2.2083];
	variants_to_table_fields -> variants_to_table	[_draw_="c 7 -#000000 B 10 4473.94 403.57 4454.83 395.91 4433 382.45 4433 361 4433 361 4433 361 4433 179 4433 168.79 4427.78 158.75 4422.2 \
150.94 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4444.5 268.1 0 23 6 -fields ",
		label=fields,
		lp="4444.5,270",
		pos="e,4417.1,144.45 4473.9,403.57 4454.8,395.91 4433,382.45 4433,361 4433,361 4433,361 4433,179 4433,168.79 4427.8,158.75 4422.2,150.94"];
	binding_threshold -> pvacseq	[_draw_="c 7 -#000000 B 16 219.98 403.5 229.79 400.35 241.32 397.04 252 395 300.8 385.67 473 410.69 473 361 473 361 473 361 473 179 473 130.65 \
640.76 156.2 689 153 952.28 135.56 1792.77 135.62 2000.99 135.91 ",
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		label=binding_threshold,
		lp="510,270",
		pos="e,2009.3,135.92 219.98,403.5 229.79,400.35 241.32,397.04 252,395 300.8,385.67 473,410.69 473,361 473,361 473,361 473,179 473,130.65 \
640.76,156.2 689,153 952.28,135.56 1792.8,135.62 2001,135.91"];
	tdna_cov -> pvacseq	[_draw_="c 7 -#000000 B 16 1258.54 403.54 1264.66 400.35 1271.99 397.01 1279 395 1333.52 379.37 1402 417.72 1402 361 1402 361 1402 361 1402 \
179 1402 153.56 1428.35 159.29 1453 153 1505.36 139.63 1869.34 136.76 2000.79 136.16 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2000.6 138.61 2007.59 136.13 2000.58 133.71 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1420.5 268.1 0 37 8 -tdna_cov ",
		label=tdna_cov,
		lp="1420.5,270",
		pos="e,2009.1,136.12 1258.5,403.54 1264.7,400.35 1272,397.01 1279,395 1333.5,379.37 1402,417.72 1402,361 1402,361 1402,361 1402,179 1402,\
153.56 1428.3,159.29 1453,153 1505.4,139.63 1869.3,136.76 2000.8,136.16"];
	netmhc_stab -> pvacseq	[_draw_="c 7 -#000000 B 16 1338.45 403.59 1346.01 400.56 1354.81 397.32 1363 395 1402.14 383.9 1448 401.69 1448 361 1448 361 1448 361 1448 \
179 1448 145.81 1485.43 159.39 1518 153 1609.67 135 1889.13 134.86 2000.98 135.57 ",
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		label=netmhc_stab,
		lp="1474.5,270",
		pos="e,2009.4,135.63 1338.4,403.59 1346,400.56 1354.8,397.32 1363,395 1402.1,383.9 1448,401.69 1448,361 1448,361 1448,361 1448,179 1448,\
145.81 1485.4,159.39 1518,153 1609.7,135 1889.1,134.86 2001,135.57"];
	trna_vaf -> pvacseq	[_draw_="c 7 -#000000 B 16 1406.84 403.61 1412.42 400.65 1418.9 397.45 1425 395 1462.76 379.84 1510 401.69 1510 361 1510 361 1510 361 1510 \
179 1510 156.29 1532.2 159.37 1554 153 1596.09 140.71 1885.85 137.21 2000.99 136.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2000.8 138.75 2007.78 136.24 2000.76 133.85 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1527 268.1 0 34 8 -trna_vaf ",
		label=trna_vaf,
		lp="1527,270",
		pos="e,2009.3,136.23 1406.8,403.61 1412.4,400.65 1418.9,397.45 1425,395 1462.8,379.84 1510,401.69 1510,361 1510,361 1510,361 1510,179 \
1510,156.29 1532.2,159.37 1554,153 1596.1,140.71 1885.9,137.21 2001,136.3"];
	reference_fasta -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 10 4364.93 403.67 4355.93 400.33 4345.1 396.84 4335 395 4172.05 365.24 3755.37 379.53 3590 370 3579.63 369.4 3568.73 \
368.65 3557.98 367.85 ",
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		label=reference_fasta,
		lp="4298.5,382.5",
		pos="e,3549.8,367.22 4364.9,403.67 4355.9,400.33 4345.1,396.84 4335,395 4172,365.24 3755.4,379.53 3590,370 3579.6,369.4 3568.7,368.65 \
3558,367.85"];
	reference_fasta -> variants_to_table	[_draw_="c 7 -#000000 B 10 4385 403.7 4385 393.6 4385 376.05 4385 361 4385 361 4385 361 4385 179 4385 168.79 4390.22 158.75 4395.8 150.94 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4405 268.1 0 40 9 -reference ",
		label=reference,
		lp="4405,270",
		pos="e,4400.9,144.45 4385,403.7 4385,393.6 4385,376.05 4385,361 4385,361 4385,361 4385,179 4385,168.79 4390.2,158.75 4395.8,150.94"];
	variants_to_table_genotype_fields -> variants_to_table	[_draw_="c 7 -#000000 B 13 4615.58 403.56 4584.84 398.13 4548.33 391.3 4533 387 4501.45 378.14 4464 393.77 4464 361 4464 361 4464 361 4464 \
179 4464 165.25 4453.2 155.24 4441.17 148.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4442.3 146.18 4434.95 145.16 4440.06 150.54 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4497 268.1 0 66 15 -genotype_fields ",
		label=genotype_fields,
		lp="4497,270",
		pos="e,4433.6,144.47 4615.6,403.56 4584.8,398.13 4548.3,391.3 4533,387 4501.4,378.14 4464,393.77 4464,361 4464,361 4464,361 4464,179 \
4464,165.25 4453.2,155.24 4441.2,148.36"];
	additional_report_columns -> pvacseq	[_draw_="c 7 -#000000 B 13 1516.89 403.62 1532.46 395.28 1552 380.86 1552 361 1552 361 1552 361 1552 179 1552 114.84 1630.26 160.33 1694 \
153 1803.32 140.42 1932.68 137.12 2000.71 136.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2000.61 138.73 2007.59 136.2 2000.56 133.83 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1606.5 268.1 0 109 25 -additional_report_columns ",
		label=additional_report_columns,
		lp="1606.5,270",
		pos="e,2009.1,136.18 1516.9,403.62 1532.5,395.28 1552,380.86 1552,361 1552,361 1552,361 1552,179 1552,114.84 1630.3,160.33 1694,153 1803.3,\
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	gene_expression_file -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 13 4247.62 403.56 4236.64 400.46 4223.81 397.17 4212 395 4176.85 388.55 4167.51 390.98 4132 387 3970.88 368.93 3920.55 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3689.88 283.5 3683.16 280.38 3686.46 287.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3800.5 335.6 0 61 15 -expression_file ",
		label=expression_file,
		lp="3800.5,337.5",
		pos="e,3682.1,279.32 4247.6,403.56 4236.6,400.46 4223.8,397.17 4212,395 4176.9,388.55 4167.5,390.98 4132,387 3970.9,368.93 3920.5,402.17 \
3770,342 3737.1,328.84 3705.3,301.58 3687.8,284.93"];
	rnaseq_bam -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 13 3765.4 403.52 3758.02 400.33 3749.26 396.99 3741 395 3701.96 385.59 3690.27 395.41 3651 387 3639.04 384.44 3636.92 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3660.5 380.6 0 19 3 -bam ",
		label=bam,
		lp="3660.5,382.5",
		pos="e,3549.9,366.1 3765.4,403.52 3758,400.33 3749.3,396.99 3741,395 3702,385.59 3690.3,395.41 3651,387 3639,384.44 3636.9,380.73 3625,\
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	normal_sample_name -> pvacseq	[_draw_="c 7 -#000000 B 10 1647.13 403.56 1656.28 394.14 1669 377.99 1669 361 1669 361 1669 361 1669 179 1669 145.95 1899.49 138.3 2000.98 \
136.53 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2000.75 138.98 2007.71 136.42 2000.67 134.08 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1714 268.1 0 90 18 -normal_sample_name ",
		label=normal_sample_name,
		lp="1714,270",
		pos="e,2009.2,136.39 1647.1,403.56 1656.3,394.14 1669,377.99 1669,361 1669,361 1669,361 1669,179 1669,145.95 1899.5,138.3 2001,136.53"];
	run_reference_proteome_similarity -> pvacseq	[_draw_="c 7 -#000000 B 10 1803.37 403.59 1808.11 393.68 1815 376.59 1815 361 1815 361 1815 361 1815 179 1815 141.62 1932.41 135.64 2000.54 \
135.32 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2000.49 137.77 2007.49 135.31 2000.48 132.87 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1886 268.1 0 142 33 -run_reference_proteome_similarity ",
		label=run_reference_proteome_similarity,
		lp="1886,270",
		pos="e,2009,135.31 1803.4,403.59 1808.1,393.68 1815,376.59 1815,361 1815,361 1815,361 1815,179 1815,141.62 1932.4,135.64 2000.5,135.32"];
	pvacseq -> pvacseq_predictions	[_draw_="c 7 -#000000 B 4 2086.61 132.02 2307.69 120.67 3412.99 63.92 3695.94 49.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3695.69 51.86 3702.56 49.05 3695.44 46.96 ",
		pos="e,3704.1,48.974 2086.6,132.02 2307.7,120.67 3413,63.919 3695.9,49.392"];
	add_gene_expression_data_to_vcf -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 7 3702.7 260.61 3721.92 255.16 3747.85 248.14 3771 243 3782.41 240.47 3794.65 238.06 3806.45 235.9 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3777.5 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="3777.5,247.5",
		pos="e,3814.5,234.45 3702.7,260.61 3721.9,255.16 3747.9,248.14 3771,243 3782.4,240.47 3794.7,238.06 3806.4,235.9"];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 3946 170.5 3946 189.5 4008 189.5 4008 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3977 177.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="3977,180",
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		width=0.86111];
	index -> pvacseq	[_draw_="c 7 -#000000 B 7 3946.14 177.82 3838.77 173.75 3471.45 160.18 3168 153 2752.04 143.16 2249.05 137.89 2095.05 136.43 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3497.5 155.6 0 37 9 -input_vcf ",
		label=input_vcf,
		lp="3497.5,157.5",
		pos="e,2086.7,136.35 3946.1,177.82 3838.8,173.75 3471.4,160.18 3168,153 2752,143.16 2249.1,137.89 2095,136.43"];
	index -> variants_to_table	[_draw_="c 7 -#000000 B 7 4007.84 177.35 4052.81 174.81 4138.95 169.46 4212 162 4256.06 157.5 4305.46 150.98 4343.78 145.59 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4293.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="4293.5,157.5",
		pos="e,4351.8,144.46 4007.8,177.35 4052.8,174.81 4139,169.46 4212,162 4256.1,157.5 4305.5,150.98 4343.8,145.59"];
	index -> add_vep_fields_to_table	[_draw_="c 7 -#000000 B 4 4007.72 172.74 4081.46 157.72 4269.03 119.51 4359.16 101.15 ",
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		label=vcf,
		lp="4241.5,135",
		pos="e,4367.3,99.492 4007.7,172.74 4081.5,157.72 4269,119.51 4359.2,101.15"];
	tumor_rna_bam_readcount -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 3549.78 354.6 3565.84 352.09 3579.76 348.15 3585 342 3589.74 336.43 3589.12 332.06 3585.22 328.62 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3594.5 335.6 0 13 3 -vcf ",
		label=vcf,
		lp="3594.5,337.5",
		pos="e,3578.1,324.49 3549.8,354.6 3565.8,352.09 3579.8,348.15 3585,342 3589.7,336.43 3589.1,332.06 3585.2,328.62"];
	tumor_rna_bam_readcount -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 10 3410.2 354.24 3395.01 351.72 3381.98 347.87 3377 342 3374.41 338.95 3374.35 336 3377 333 3378.78 330.99 3381.29 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3385.18 329.94 3390.73 325.01 3383.32 325.41 ",
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		label=snv_bam_readcount_tsv,
		lp="3426,337.5",
		pos="e,3392.1,324.44 3410.2,354.24 3395,351.72 3382,347.87 3377,342 3374.4,338.95 3374.4,336 3377,333 3378.8,330.99 3381.3,329.2 3384.4,\
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	tumor_rna_bam_readcount -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 3477.89 350.67 3477 345.25 3476.8 338.24 3480 333 3480.67 331.9 3481.44 330.87 3482.28 329.9 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3532 335.6 0 104 23 -indel_bam_readcount_tsv ",
		label=indel_bam_readcount_tsv,
		lp="3532,337.5",
		pos="e,3488.8,324.4 3477.9,350.67 3477,345.25 3476.8,338.24 3480,333 3480.7,331.9 3481.4,330.87 3482.3,329.9"];
	add_transcript_expression_data_to_vcf -> annotated_vcf	[_draw_="c 7 -#000000 B 10 3867 215.76 3867 207.1 3867 193.09 3867 181 3867 181 3867 181 3867 89 3867 80.31 3867 70.63 3867 62.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3869.45 62.76 3867 55.76 3864.55 62.76 ",
		pos="e,3867,54.243 3867,215.76 3867,207.1 3867,193.09 3867,181 3867,181 3867,181 3867,89 3867,80.308 3867,70.627 3867,62.655"];
	add_transcript_expression_data_to_vcf -> index	[_draw_="c 7 -#000000 B 4 3888.73 215.5 3905.53 208.94 3928.96 199.78 3947.46 192.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3948.28 194.86 3953.9 190.03 3946.49 190.3 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3937.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="3937.5,202.5",
		pos="e,3955.3,189.48 3888.7,215.5 3905.5,208.94 3929,199.78 3947.5,192.55"];
	variants_to_table -> add_vep_fields_to_table	[_draw_="c 7 -#000000 B 4 4409 125.71 4409 120.59 4409 113.85 4409 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4411.45 107.78 4409 100.78 4406.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4415.5 110.6 0 13 3 -tsv ",
		label=tsv,
		lp="4415.5,112.5",
		pos="e,4409,99.265 4409,125.71 4409,120.59 4409,113.85 4409,107.67"];
	add_tumor_rna_bam_readcount_to_vcf -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 4 3544.81 305.5 3570.5 298.64 3606.78 288.95 3634.36 281.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3634.66 284.04 3640.8 279.87 3633.4 279.31 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3613.5 290.6 0 13 3 -vcf ",
		label=vcf,
		lp="3613.5,292.5",
		pos="e,3642.3,279.48 3544.8,305.5 3570.5,298.64 3606.8,288.95 3634.4,281.59"];
	add_vep_fields_to_table -> annotated_tsv	[_draw_="c 7 -#000000 B 4 4330.53 81.53 4237.96 72.73 4086.75 58.34 4008.12 50.86 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4008.53 48.44 4001.33 50.22 4008.07 53.32 ",
		pos="e,3999.8,50.074 4330.5,81.535 4238,72.728 4086.8,58.344 4008.1,50.864"];
	default1	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 3754 305.5 3754 324.5 3804 324.5 3804 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3779 312.5 0 34 6 -\"gene\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"gene\"",
		pos="3779,315",
		rects="3754,305.5,3804,324.5",
		width=0.69444];
	default1 -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 7 3772.25 305.73 3767.05 299.89 3759.34 292.37 3751 288 3746.54 285.66 3741.78 283.65 3736.89 281.91 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3737.98 279.69 3730.57 279.86 3736.47 284.35 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3782.5 290.6 0 41 9 -data_type ",
		label=data_type,
		lp="3782.5,292.5",
		pos="e,3729.1,279.4 3772.3,305.73 3767,299.89 3759.3,292.37 3751,288 3746.5,285.66 3741.8,283.65 3736.9,281.91"];
	default2	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 3750 260.5 3750 279.5 3822 279.5 3822 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3786 267.5 0 56 12 -\"transcript\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"transcript\"",
		pos="3786,270",
		rects="3750,260.5,3822,279.5",
		width=1];
	default2 -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 7 3785.03 260.7 3784.84 255 3785.63 247.66 3790 243 3792.17 240.68 3796.08 238.65 3801.03 236.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3801.52 239.28 3807.49 234.89 3800.08 234.6 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3810.5 245.6 0 41 9 -data_type ",
		label=data_type,
		lp="3810.5,247.5",
		pos="e,3808.9,234.44 3785,260.7 3784.8,255 3785.6,247.66 3790,243 3792.2,240.68 3796.1,238.65 3801,236.87"];
	default3	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 3591.5 350.5 3591.5 369.5 3638.5 369.5 3638.5 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3615 357.5 0 31 5 -\"RNA\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"RNA\"",
		pos="3615,360",
		rects="3591.5,350.5,3638.5,369.5",
		width=0.65278];
	default3 -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 3612.96 350.7 3611.09 344.85 3607.71 337.33 3602 333 3598.68 330.49 3592.94 328.29 3585.92 326.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3586.69 324.05 3579.31 324.78 3585.54 328.81 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3628.5 335.6 0 41 9 -data_type ",
		label=data_type,
		lp="3628.5,337.5",
		pos="e,3577.8,324.43 3613,350.7 3611.1,344.85 3607.7,337.33 3602,333 3598.7,330.49 3592.9,328.29 3585.9,326.38"];
	default4	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 4544 125.5 4544 144.5 4610 144.5 4610 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4577 132.5 0 50 9 -\"pvacseq\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"pvacseq\"",
		pos="4577,135",
		rects="4544,125.5,4610,144.5",
		width=0.91667];
	default4 -> add_vep_fields_to_table	[_draw_="c 7 -#000000 B 7 4568 125.52 4561.14 119.59 4551.18 112.03 4541 108 4526.73 102.35 4510.98 98.49 4495.47 95.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4496.19 93.5 4488.89 94.84 4495.43 98.34 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4568 110.6 0 24 6 -prefix ",
		label=prefix,
		lp="4568,112.5",
		pos="e,4487.4,94.61 4568,125.52 4561.1,119.59 4551.2,112.03 4541,108 4526.7,102.35 4511,98.492 4495.5,95.87"];
}