digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 413 807 413 807 0 ",
		bb="0,0,807,413",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 350 8 405 799 405 799 350 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 393 0 84 15 -Workflow Inputs ",
			bb="8,350,799,405",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,395.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		insert_size	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 419.5 358.5 419.5 377.5 488.5 377.5 488.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 454 365.5 0 53 11 -insert_size ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=insert_size,
			pos="454,368",
			rects="419.5,358.5,488.5,377.5",
			width=0.95833];
		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 358.5 16.5 377.5 79.5 377.5 79.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 48 365.5 0 47 9 -reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference,
			pos="48,368",
			rects="16.5,358.5,79.5,377.5",
			width=0.875];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 492.5 358.5 492.5 377.5 565.5 377.5 565.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 529 365.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="529,368",
			rects="492.5,358.5,565.5,377.5",
			width=1.0139];
		region_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 570 358.5 570 377.5 638 377.5 638 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 604 365.5 0 52 11 -region_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=region_file,
			pos="604,368",
			rects="570,358.5,638,377.5",
			width=0.94444];
		normal_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 84 358.5 84 377.5 162 377.5 162 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 123 365.5 0 62 10 -normal_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_bam,
			pos="123,368",
			rects="84,358.5,162,377.5",
			width=1.0833];
		tumor_sample_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 166 358.5 166 377.5 286 377.5 286 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 226 365.5 0 104 17 -tumor_sample_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_sample_name,
			pos="226,368",
			rects="166,358.5,286,377.5",
			width=1.6667];
		normal_sample_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 290.5 358.5 290.5 377.5 415.5 377.5 415.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 353 365.5 0 109 18 -normal_sample_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_sample_name,
			pos="353,368",
			rects="290.5,358.5,415.5,377.5",
			width=1.7361];
		ref_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 642.5 358.5 642.5 377.5 705.5 377.5 705.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 674 365.5 0 47 8 -ref_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=ref_name,
			pos="674,368",
			rects="642.5,358.5,705.5,377.5",
			width=0.875];
		output_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 709.5 358.5 709.5 377.5 790.5 377.5 790.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 750 365.5 0 65 11 -output_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_name,
			pos="750,368",
			rects="709.5,358.5,790.5,377.5",
			width=1.125];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 580 8 580 63 700 63 700 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 634 15 0 92 16 -Workflow Outputs ",
			bb="580,8,700,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="634,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		pindel_region_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 588.5 35.5 588.5 54.5 691.5 54.5 691.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 640 42.5 0 87 17 -pindel_region_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=pindel_region_vcf,
			pos="640,45",
			rects="588.5,35.5,691.5,54.5",
			width=1.4306];
	}
	pindel_region	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 322 305.5 322 324.5 414 324.5 414 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 368 312.5 0 76 15 -pindel v0.2.5b8 ",
		height=0.27778,
		label="pindel v0.2.5b8",
		pos="368,315",
		rects="322,305.5,414,324.5",
		width=1.2778];
	insert_size -> pindel_region	[_draw_="c 7 -#000000 B 7 454.1 358.51 453.71 350.78 451.87 339.59 445 333 441.1 329.26 432.3 326.21 421.97 323.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 422.68 321.43 415.32 322.36 421.66 326.22 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 472 335.6 0 44 11 -insert_size ",
		label=insert_size,
		lp="472,337.5",
		pos="e,413.84,322.05 454.1,358.51 453.71,350.78 451.87,339.59 445,333 441.1,329.26 432.3,326.21 421.97,323.78"];
	reference -> pindel_region	[_draw_="c 7 -#000000 B 7 64.27 358.52 81.17 350.21 108.65 338.06 134 333 194.85 320.85 266.15 317.14 313.91 316.13 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 313.79 318.58 320.74 316 313.7 313.68 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 154 335.6 0 40 9 -reference ",
		label=reference,
		lp="154,337.5",
		pos="e,322.25,315.97 64.267,358.52 81.172,350.21 108.65,338.06 134,333 194.85,320.85 266.15,317.14 313.91,316.13"];
	pindel2vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 594 215.5 594 234.5 686 234.5 686 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 640 222.5 0 76 15 -pindel v0.2.5b8 ",
		height=0.27778,
		label="pindel v0.2.5b8",
		pos="640,225",
		rects="594,215.5,686,234.5",
		width=1.2778];
	reference -> pindel2vcf	[_draw_="c 7 -#000000 B 10 59.77 358.57 70.6 351.1 87.32 340.28 103 333 271.44 254.84 327.28 269.97 511 243 535.58 239.39 562.86 235.74 585.97 \
232.76 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 586.15 235.21 592.78 231.88 585.53 230.35 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 236 290.6 0 40 9 -reference ",
		label=reference,
		lp="236,292.5",
		pos="e,594.28,231.69 59.768,358.57 70.6,351.1 87.318,340.28 103,333 271.44,254.84 327.28,269.97 511,243 535.58,239.39 562.86,235.74 585.97,\
232.76"];
	tumor_bam -> pindel_region	[_draw_="c 7 -#000000 B 7 523.29 358.74 517.26 350.72 506.97 338.92 495 333 482.3 326.72 450.77 322.48 422.32 319.8 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 422.7 317.38 415.51 319.19 422.26 322.26 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 530 335.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="530,337.5",
		pos="e,414,319.06 523.29,358.74 517.26,350.72 506.97,338.92 495,333 482.3,326.72 450.77,322.48 422.32,319.8"];
	region_file -> pindel_region	[_draw_="c 7 -#000000 B 7 594.85 358.63 585.39 350.53 569.81 338.67 554 333 530.58 324.61 468.41 320.17 422.36 317.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 422.57 315.51 415.47 317.64 422.35 320.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 592.5 335.6 0 43 11 -region_file ",
		label=region_file,
		lp="592.5,337.5",
		pos="e,413.96,317.57 594.85,358.63 585.39,350.53 569.81,338.67 554,333 530.58,324.61 468.41,320.17 422.36,317.96"];
	normal_bam -> pindel_region	[_draw_="c 7 -#000000 B 7 138.53 358.63 154.11 350.64 179.02 338.97 202 333 238.7 323.46 281.28 319.23 314.12 317.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 313.87 319.84 320.74 317.03 313.62 314.95 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 227.5 335.6 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="227.5,337.5",
		pos="e,322.25,316.96 138.53,358.63 154.11,350.64 179.02,338.97 202,333 238.7,323.46 281.28,319.23 314.12,317.38"];
	tumor_sample_name -> pindel_region	[_draw_="c 7 -#000000 B 7 234.04 358.56 242.11 350.64 255.27 339.13 269 333 282.98 326.77 299 322.81 314.03 320.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 314.21 322.75 320.76 319.28 313.47 317.91 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 311.5 335.6 0 85 17 -tumor_sample_name ",
		label=tumor_sample_name,
		lp="311.5,337.5",
		pos="e,322.26,319.05 234.04,358.56 242.11,350.64 255.27,339.13 269,333 282.98,326.77 299,322.81 314.03,320.3"];
	normal_sample_name -> pindel_region	[_draw_="c 7 -#000000 B 7 353.33 358.68 353.82 351.66 355.03 341.44 358 333 358.13 332.63 358.27 332.26 358.42 331.88 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 360.58 333.04 361.55 325.68 356.21 330.82 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 403 335.6 0 90 18 -normal_sample_name ",
		label=normal_sample_name,
		lp="403,337.5",
		pos="e,362.24,324.33 353.33,358.68 353.82,351.66 355.03,341.44 358,333 358.13,332.63 358.27,332.26 358.42,331.88"];
	ref_name -> pindel2vcf	[_draw_="c 7 -#000000 B 4 671.97 358.6 666.48 335.82 651.22 272.55 643.95 242.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 646.35 241.88 642.33 235.65 641.59 243.03 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 676.5 290.6 0 39 8 -ref_name ",
		label=ref_name,
		lp="676.5,292.5",
		pos="e,641.97,234.18 671.97,358.6 666.48,335.82 651.22,272.55 643.95,242.39"];
	output_name -> pindel2vcf	[_draw_="c 7 -#000000 B 7 745.12 358.87 736.21 344.23 716.42 312.65 697 288 683.44 270.78 666.22 252.48 654.27 240.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 656.28 238.8 649.62 235.53 652.79 242.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 730.5 290.6 0 55 11 -output_name ",
		label=output_name,
		lp="730.5,292.5",
		pos="e,648.56,234.46 745.12,358.87 736.21,344.23 716.42,312.65 697,288 683.44,270.78 666.22,252.48 654.27,240.26"];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 609 80.5 609 99.5 671 99.5 671 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 640 87.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="640,90",
		rects="609,80.5,671,99.5",
		width=0.86111];
	index -> pindel_region_vcf	[_draw_="c 7 -#000000 B 4 640 80.71 640 75.59 640 68.85 640 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 642.45 62.78 640 55.78 637.55 62.78 ",
		pos="e,640,54.265 640,80.709 640,75.593 640,68.848 640,62.666"];
	cat	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 408 260.5 408 279.5 440 279.5 440 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 424 267.5 0 16 3 -cat ",
		height=0.27778,
		label=cat,
		pos="424,270",
		rects="408,260.5,440,279.5",
		width=0.44444];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 413.99 314.41 448.11 313.62 490.61 309.93 502 297 518.42 278.37 476.49 273.05 447.94 271.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 448.19 269.12 441.1 271.27 447.99 274.01 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 529 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="529,292.5",
		pos="e,439.58,271.21 413.99,314.41 448.11,313.62 490.61,309.93 502,297 518.42,278.37 476.49,273.05 447.94,271.56"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 322.25 312.28 296.7 309.65 272.5 303.27 286 288 300.59 271.5 364.53 269.89 400.03 270.32 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 399.84 272.77 406.88 270.44 399.93 267.87 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 310 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="310,292.5",
		pos="e,408.4,270.47 322.25,312.28 296.7,309.65 272.5,303.27 286,288 300.59,271.5 364.53,269.89 400.03,270.32"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 351.71 305.67 344.2 300.72 337.95 294.22 343 288 350.08 279.27 378.76 274.86 399.99 272.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 400.01 275.21 406.76 272.14 399.57 270.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 367 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="367,292.5",
		pos="e,408.27,272.01 351.71,305.67 344.2,300.72 337.95,294.22 343,288 350.08,279.27 378.76,274.86 399.99,272.75"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 377.95 305.63 384.2 300.45 392.47 293.71 400 288 401.64 286.76 403.35 285.49 405.08 284.22 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 406.19 286.45 410.45 280.38 403.33 282.46 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 424 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="424,292.5",
		pos="e,411.68,279.49 377.95,305.63 384.2,300.45 392.47,293.71 400,288 401.64,286.76 403.35,285.49 405.08,284.22"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 413.74 308.78 427.77 306.17 440.67 302.39 445 297 448.1 293.14 446.8 288.97 443.69 285.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 445.55 283.5 438.79 280.46 442.18 287.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 470 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="470,292.5",
		pos="e,437.69,279.42 413.74,308.78 427.77,306.17 440.67,302.39 445,297 448.1,293.14 446.8,288.97 443.69,285.12"];
	remove_end_tags	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 575.5 125.5 575.5 144.5 704.5 144.5 704.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 640 132.5 0 113 20 -remove END INFO tags ",
		height=0.27778,
		label="remove END INFO tags",
		pos="640,135",
		rects="575.5,125.5,704.5,144.5",
		width=1.7917];
	remove_end_tags -> index	[_draw_="c 7 -#000000 B 4 640 125.71 640 120.59 640 113.85 640 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 642.45 107.78 640 100.78 637.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 646.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="646.5,112.5",
		pos="e,640,99.265 640,125.71 640,120.59 640,113.85 640,107.67"];
	fix_vcf_header	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 598.5 170.5 598.5 189.5 681.5 189.5 681.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 640 177.5 0 67 14 -fix vcf header ",
		height=0.27778,
		label="fix vcf header",
		pos="640,180",
		rects="598.5,170.5,681.5,189.5",
		width=1.1528];
	fix_vcf_header -> remove_end_tags	[_draw_="c 7 -#000000 B 4 640 170.71 640 165.59 640 158.85 640 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 642.45 152.78 640 145.78 637.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 646.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="646.5,157.5",
		pos="e,640,144.27 640,170.71 640,165.59 640,158.85 640,152.67"];
	cat -> pindel2vcf	[_draw_="c 7 -#000000 B 4 439.88 265.84 470.92 259.66 540.81 245.75 589.18 236.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 589.48 238.56 595.87 234.79 588.52 233.75 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 572.5 245.6 0 43 10 -pindel_out ",
		label=pindel_out,
		lp="572.5,247.5",
		pos="e,597.35,234.49 439.88,265.84 470.92,259.66 540.81,245.75 589.18,236.12"];
	pindel2vcf -> fix_vcf_header	[_draw_="c 7 -#000000 B 4 640 215.71 640 210.59 640 203.85 640 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 642.45 197.78 640 190.78 637.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 646.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="646.5,202.5",
		pos="e,640,189.27 640,215.71 640,210.59 640,203.85 640,197.67"];
}