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	kallisto_index -> kallisto	[_draw_="c 7 -#000000 B 7 242.35 268.55 250.25 265.52 259.45 262.29 268 260 517.58 193.34 825.08 154.99 946.32 141.53 ",
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		label=kallisto_index,
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		pos="e,954.72,140.6 242.35,268.55 250.25,265.52 259.45,262.29 268,260 517.58,193.34 825.08,154.99 946.32,141.53"];
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	sample_name -> stringtie	[_draw_="c 7 -#000000 B 7 1523.6 268.67 1522.85 254.25 1521.04 223.68 1518 198 1516.16 182.49 1513.25 164.93 1511.04 152.46 ",
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		lp="1547,202.5",
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		label=bam,
		lp="1090.5,247.5",
		pos="e,1042,234.46 1105.1,268.56 1095.7,260.86 1080.7,249.7 1066,243 1060.9,240.69 1055.5,238.66 1050,236.89"];
	trimming_max_uncalled -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 1219 268.53 1206.85 265.53 1192.85 262.32 1180 260 1151.36 254.83 1142.37 261.9 1115 252 1108.04 249.49 1107.9 \
245.66 1101 243 1094.3 240.41 1087.2 238.22 1079.99 236.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1080.98 234.08 1073.61 234.82 1079.84 238.84 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1143.5 245.6 0 57 12 -max_uncalled ",
		label=max_uncalled,
		lp="1143.5,247.5",
		pos="e,1072.1,234.47 1219,268.53 1206.8,265.53 1192.8,262.32 1180,260 1151.4,254.83 1142.4,261.9 1115,252 1108,249.49 1107.9,245.66 1101,\
243 1094.3,240.41 1087.2,238.22 1080,236.36"];
	strand -> kallisto	[_draw_="c 7 -#000000 B 7 1441.31 268.63 1436.7 265.61 1431.25 262.36 1426 260 1296.66 201.89 1133.08 163.33 1051 146.18 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1051.67 143.82 1044.32 144.8 1050.67 148.62 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1293.5 200.6 0 27 6 -strand ",
		label=strand,
		lp="1293.5,202.5",
		pos="e,1042.8,144.49 1441.3,268.63 1436.7,265.61 1431.3,262.36 1426,260 1296.7,201.89 1133.1,163.33 1051,146.18"];
	strand -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 1442.34 268.51 1437.61 265.23 1431.81 261.83 1426 260 1391.63 249.15 1297.9 264.24 1264 252 1257.73 249.74 1258.25 \
245.32 1252 243 1228.88 234.42 1177.56 230.1 1127.14 227.94 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1127.33 225.5 1120.24 227.67 1127.14 230.4 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1277.5 245.6 0 27 6 -strand ",
		label=strand,
		lp="1277.5,247.5",
		pos="e,1118.7,227.6 1442.3,268.51 1437.6,265.23 1431.8,261.83 1426,260 1391.6,249.15 1297.9,264.24 1264,252 1257.7,249.74 1258.3,245.32 \
1252,243 1228.9,234.42 1177.6,230.1 1127.1,227.94"];
	strand -> stringtie	[_draw_="c 7 -#000000 B 4 1456.28 268.6 1465.2 245.72 1490.06 182 1501.76 152 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1504 153 1504.26 145.59 1499.43 151.22 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1496.5 200.6 0 27 6 -strand ",
		label=strand,
		lp="1496.5,202.5",
		pos="e,1504.8,144.18 1456.3,268.6 1465.2,245.72 1490.1,182 1501.8,152"];
	strand -> generate_qc_metrics	[_draw_="c 7 -#000000 B 10 1452.47 268.7 1451.88 258.61 1451 241.06 1451 226 1451 226 1451 226 1451 134 1451 121.09 1460.79 110.94 1471.34 \
103.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1472.34 106.01 1477 100.25 1469.76 101.84 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1464.5 178.1 0 27 6 -strand ",
		label=strand,
		lp="1464.5,180",
		pos="e,1478.3,99.45 1452.5,268.7 1451.9,258.61 1451,241.06 1451,226 1451,226 1451,226 1451,134 1451,121.09 1460.8,110.94 1471.3,103.75"];
	read_group_fields -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 1351.03 268.54 1341.28 265.31 1329.72 261.94 1319 260 1288.99 254.57 1210.83 261.94 1182 252 1175.36 249.71 1175.59 \
245.43 1169 243 1160.07 239.71 1144.93 237.01 1127.26 234.79 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1127.72 232.38 1120.48 233.99 1127.15 237.25 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1218.5 245.6 0 73 17 -read_group_fields ",
		label=read_group_fields,
		lp="1218.5,247.5",
		pos="e,1119,233.81 1351,268.54 1341.3,265.31 1329.7,261.94 1319,260 1289,254.57 1210.8,261.94 1182,252 1175.4,249.71 1175.6,245.43 1169,\
243 1160.1,239.71 1144.9,237.01 1127.3,234.79"];
	trimming_adapters -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 10 348.61 268.58 358.89 265.47 370.91 262.18 382 260 450.43 246.52 468.44 248.07 538 243 650.43 234.81 778.59 230.49 \
871.19 228.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 871.02 230.71 877.96 228.09 870.91 225.81 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 556.5 245.6 0 37 8 -adapters ",
		label=adapters,
		lp="556.5,247.5",
		pos="e,879.48,228.06 348.61,268.58 358.89,265.47 370.91,262.18 382,260 450.43,246.52 468.44,248.07 538,243 650.43,234.81 778.59,230.49 \
871.19,228.26"];
	trimming_adapter_trim_end -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 10 498.94 268.5 512.02 265.75 526.62 262.71 540 260 578.61 252.18 587.88 247.69 627 243 707.82 233.31 799.11 229.04 \
871.04 227.2 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 870.81 229.66 877.75 227.04 870.69 224.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 663 245.6 0 72 16 -adapter_trim_end ",
		label=adapter_trim_end,
		lp="663,247.5",
		pos="e,879.26,227 498.94,268.5 512.02,265.75 526.62,262.71 540,260 578.61,252.18 587.88,247.69 627,243 707.82,233.31 799.11,229.04 871.04,\
227.2"];
	reference_annotation -> stringtie	[_draw_="c 7 -#000000 B 7 1627.11 268.7 1618.13 253.79 1598.02 221.8 1577 198 1560.87 179.74 1539.72 161.42 1525.1 149.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1526.67 147.59 1519.68 145.11 1523.6 151.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1628.5 200.6 0 89 20 -reference_annotation ",
		label=reference_annotation,
		lp="1628.5,202.5",
		pos="e,1518.5,144.16 1627.1,268.7 1618.1,253.79 1598,221.8 1577,198 1560.9,179.74 1539.7,161.42 1525.1,149.48"];
	transcript_to_gene -> gene_abundance	[_draw_="c 7 -#000000 B 4 770 80.71 770 75.59 770 68.85 770 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 772.45 62.78 770 55.78 767.55 62.78 ",
		pos="e,770,54.265 770,80.709 770,75.593 770,68.848 770,62.666"];
	kallisto -> transcript_abundance_tsv	[_draw_="c 7 -#000000 B 4 989.03 125.56 971.04 110.35 933.03 78.18 911.25 59.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 912.87 57.91 905.95 55.26 909.71 61.65 ",
		pos="e,904.79,54.284 989.03,125.56 971.04,110.35 933.03,78.18 911.25,59.747"];
	kallisto -> fusion_evidence	[_draw_="c 7 -#000000 B 4 1000.82 125.56 1003.95 111.07 1010.4 81.21 1014.44 62.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1016.81 63.12 1015.89 55.76 1012.02 62.09 ",
		pos="e,1016.2,54.284 1000.8,125.56 1004,111.07 1010.4,81.205 1014.4,62.471"];
	kallisto -> transcript_abundance_h5	[_draw_="c 7 -#000000 B 4 1012.52 125.56 1037.43 110.02 1090.68 76.78 1119.86 58.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1120.8 60.87 1125.44 55.09 1118.21 56.71 ",
		pos="e,1126.7,54.284 1012.5,125.56 1037.4,110.02 1090.7,76.78 1119.9,58.57"];
	kallisto -> transcript_to_gene	[_draw_="c 7 -#000000 B 7 954.58 128.53 932.4 125.56 905.2 121.57 881 117 857.65 112.59 831.79 106.6 810.9 101.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 811.72 99.16 804.34 99.85 810.54 103.91 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 920.5 110.6 0 79 19 -transcript_table_h5 ",
		label=transcript_table_h5,
		lp="920.5,112.5",
		pos="e,802.87,99.491 954.58,128.53 932.4,125.56 905.2,121.57 881,117 857.65,112.59 831.79,106.6 810.9,101.48"];
	bam_to_trimmed_fastq_and_hisat_alignments -> kallisto	[_draw_="c 7 -#000000 B 4 999 215.56 999 201.14 999 171.48 999 152.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1001.45 152.8 999 145.8 996.55 152.8 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1012 178.1 0 26 6 -fastqs ",
		label=fastqs,
		lp="1012,180",
		pos="e,999,144.28 999,215.56 999,201.14 999,171.48 999,152.73"];
	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1316 170.5 1316 189.5 1426 189.5 1426 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1371 177.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="1371,180",
		rects="1316,170.5,1426,189.5",
		width=1.5278];
	bam_to_trimmed_fastq_and_hisat_alignments -> merge	[_draw_="c 7 -#000000 B 7 1118.62 223.2 1194.69 221.63 1285.66 217.51 1323 207 1333.06 204.17 1343.36 198.95 1351.82 193.93 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1353.09 196.03 1357.73 190.25 1350.5 191.87 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1354.5 200.6 0 23 4 -bams ",
		label=bams,
		lp="1354.5,202.5",
		pos="e,1359,189.45 1118.6,223.2 1194.7,221.63 1285.7,217.51 1323,207 1333.1,204.17 1343.4,198.95 1351.8,193.93"];
	stringtie -> stringtie_gene_expression_tsv	[_draw_="c 7 -#000000 B 7 1482.88 125.59 1466.61 119.61 1445.31 110.74 1428 100 1409.44 88.49 1390.78 71.68 1378.63 59.88 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1380.69 58.47 1373.99 55.28 1377.24 61.95 ",
		pos="e,1372.9,54.22 1482.9,125.59 1466.6,119.61 1445.3,110.74 1428,100 1409.4,88.489 1390.8,71.678 1378.6,59.879"];
	stringtie -> stringtie_transcript_gtf	[_draw_="c 7 -#000000 B 7 1525.03 125.61 1537.02 119.33 1553.16 110.11 1566 100 1581.04 88.15 1595.97 72.09 1605.95 60.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1607.56 62.44 1610.23 55.52 1603.83 59.27 ",
		pos="e,1611.2,54.372 1525,125.61 1537,119.33 1553.2,110.11 1566,100 1581,88.151 1596,72.086 1605.9,60.564"];
	generate_qc_metrics -> chart	[_draw_="c 7 -#000000 B 4 1492.18 80.71 1489 75.24 1484.73 67.9 1480.94 61.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1483.2 60.39 1477.57 55.57 1478.97 62.86 ",
		pos="e,1476.8,54.265 1492.2,80.709 1489,75.236 1484.7,67.899 1480.9,61.381"];
	generate_qc_metrics -> metrics	[_draw_="c 7 -#000000 B 4 1502.01 80.71 1505.32 75.24 1509.76 67.9 1513.7 61.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1515.69 62.82 1517.22 55.56 1511.5 60.28 ",
		pos="e,1518,54.265 1502,80.709 1505.3,75.236 1509.8,67.899 1513.7,61.381"];
	index_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1325 125.5 1325 144.5 1417 144.5 1417 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1371 132.5 0 76 14 -samtools index ",
		height=0.27778,
		label="samtools index",
		pos="1371,135",
		rects="1325,125.5,1417,144.5",
		width=1.2778];
	index_bam -> final_bam	[_draw_="c 7 -#000000 B 4 1359.01 125.56 1337.12 110.15 1290.52 77.34 1264.52 59.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1266.14 57.18 1259 55.16 1263.32 61.19 ",
		pos="e,1257.8,54.284 1359,125.56 1337.1,110.15 1290.5,77.342 1264.5,59.036"];
	index_bam -> generate_qc_metrics	[_draw_="c 7 -#000000 B 7 1387.13 125.66 1398.37 120.1 1413.82 112.93 1428 108 1434.85 105.62 1442.18 103.44 1449.43 101.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1449.6 103.97 1455.76 99.84 1448.37 99.23 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1437.5 110.6 0 19 3 -bam ",
		label=bam,
		lp="1437.5,112.5",
		pos="e,1457.2,99.459 1387.1,125.66 1398.4,120.1 1413.8,112.93 1428,108 1434.8,105.62 1442.2,103.44 1449.4,101.48"];
	merge -> stringtie	[_draw_="c 7 -#000000 B 4 1398.07 170.5 1419.55 163.76 1449.75 154.28 1473.06 146.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1473.6 149.36 1479.55 144.93 1472.13 144.69 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1460.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="1460.5,157.5",
		pos="e,1481,144.48 1398.1,170.5 1419.6,163.76 1449.7,154.28 1473.1,146.97"];
	merge -> index_bam	[_draw_="c 7 -#000000 B 4 1371 170.71 1371 165.59 1371 158.85 1371 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1373.45 152.78 1371 145.78 1368.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1380.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="1380.5,157.5",
		pos="e,1371,144.27 1371,170.71 1371,165.59 1371,158.85 1371,152.67"];
}