digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 368 1359 368 1359 0 ",
		bb="0,0,1359,368",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 305 8 360 1351 360 1351 305 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 348 0 84 15 -Workflow Inputs ",
			bb="8,305,1351,360",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,350.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		trimming_max_uncalled	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 418.5 313.5 418.5 332.5 553.5 332.5 553.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 486 320.5 0 119 21 -trimming_max_uncalled ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_max_uncalled,
			pos="486,323",
			rects="418.5,313.5,553.5,332.5",
			width=1.875];
		instrument_data_bams	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1126.5 313.5 1126.5 332.5 1255.5 332.5 1255.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1191 320.5 0 113 20 -instrument_data_bams ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=instrument_data_bams,
			pos="1191,323",
			rects="1126.5,313.5,1255.5,332.5",
			width=1.7917];
		reference_index	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 204.5 313.5 204.5 332.5 299.5 332.5 299.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 252 320.5 0 79 15 -reference_index ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_index,
			pos="252,323",
			rects="204.5,313.5,299.5,332.5",
			width=1.3194];
		trimming_adapters	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 304 313.5 304 332.5 414 332.5 414 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 359 320.5 0 94 17 -trimming_adapters ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_adapters,
			pos="359,323",
			rects="304,313.5,414,332.5",
			width=1.5278];
		trimming_adapter_min_overlap	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 862 313.5 862 332.5 1032 332.5 1032 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 947 320.5 0 154 28 -trimming_adapter_min_overlap ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_adapter_min_overlap,
			pos="947,323",
			rects="862,313.5,1032,332.5",
			width=2.3611];
		reference_sizes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 313.5 16.5 332.5 109.5 332.5 109.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 63 320.5 0 77 15 -reference_sizes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_sizes,
			pos="63,323",
			rects="16.5,313.5,109.5,332.5",
			width=1.2917];
		read_group_id	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1036 313.5 1036 332.5 1122 332.5 1122 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1079 320.5 0 70 13 -read_group_id ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=read_group_id,
			pos="1079,323",
			rects="1036,313.5,1122,332.5",
			width=1.1944];
		QCannotation	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1259.5 313.5 1259.5 332.5 1342.5 332.5 1342.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1301 320.5 0 67 12 -QCannotation ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=QCannotation,
			pos="1301,323",
			rects="1259.5,313.5,1342.5,332.5",
			width=1.1528];
		trimming_min_readlength	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 714.5 313.5 714.5 332.5 857.5 332.5 857.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 786 320.5 0 127 23 -trimming_min_readlength ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_min_readlength,
			pos="786,323",
			rects="714.5,313.5,857.5,332.5",
			width=1.9861];
		sample_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 114 313.5 114 332.5 200 332.5 200 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 157 320.5 0 70 11 -sample_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=sample_name,
			pos="157,323",
			rects="114,313.5,200,332.5",
			width=1.1944];
		trimming_adapter_trim_end	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 557.5 313.5 557.5 332.5 710.5 332.5 710.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 634 320.5 0 137 25 -trimming_adapter_trim_end ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_adapter_trim_end,
			pos="634,323",
			rects="557.5,313.5,710.5,332.5",
			width=2.125];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 293 8 293 63 633 63 633 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 347 15 0 92 16 -Workflow Outputs ",
			bb="293,8,633,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="347,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		gathered_directory	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 515.5 35.5 515.5 54.5 624.5 54.5 624.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 570 42.5 0 93 18 -gathered_directory ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=gathered_directory,
			pos="570,45",
			rects="515.5,35.5,624.5,54.5",
			width=1.5139];
		vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 434 35.5 434 54.5 466 54.5 466 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 450 42.5 0 16 3 -vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=vcf,
			pos="450,45",
			rects="434,35.5,466,54.5",
			width=0.44444];
		cpg_bedgraph	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 301.5 35.5 301.5 54.5 386.5 54.5 386.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 344 42.5 0 69 12 -cpg_bedgraph ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cpg_bedgraph,
			pos="344,45",
			rects="301.5,35.5,386.5,54.5",
			width=1.1806];
		cpgs	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 390.5 35.5 390.5 54.5 429.5 54.5 429.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 410 42.5 0 23 4 -cpgs ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cpgs,
			pos="410,45",
			rects="390.5,35.5,429.5,54.5",
			width=0.54167];
		cram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 470.5 35.5 470.5 54.5 511.5 54.5 511.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 491 42.5 0 25 4 -cram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cram,
			pos="491,45",
			rects="470.5,35.5,511.5,54.5",
			width=0.56944];
	}
	bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 512.5 260.5 512.5 279.5 755.5 279.5 755.5 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 634 267.5 0 227 44 -bam to trimmed fastqs and biscuit alignments ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="bam to trimmed fastqs and biscuit alignments",
		pos="634,270",
		rects="512.5,260.5,755.5,279.5",
		width=3.375];
	trimming_max_uncalled -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 506.93 313.57 525.07 306.4 552.08 296.01 576 288 582.23 285.91 588.87 283.83 595.37 281.88 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 596 284.25 602.01 279.91 594.6 279.55 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 604.5 290.6 0 57 12 -max_uncalled ",
		label=max_uncalled,
		lp="604.5,292.5",
		pos="e,603.46,279.48 506.93,313.57 525.07,306.4 552.08,296.01 576,288 582.23,285.91 588.87,283.83 595.37,281.88"];
	instrument_data_bams -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 1163.97 313.5 1136.76 305.36 1093.42 293.52 1055 288 1000.85 280.22 866.26 275.73 763.71 273.34 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 764.02 270.89 756.96 273.18 763.9 275.79 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1109.5 290.6 0 19 3 -bam ",
		label=bam,
		lp="1109.5,292.5",
		pos="e,755.45,273.15 1164,313.5 1136.8,305.36 1093.4,293.52 1055,288 1000.8,280.22 866.26,275.73 763.71,273.34"];
	pileup	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 349.5 170.5 349.5 189.5 432.5 189.5 432.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 391 177.5 0 67 14 -Biscuit pileup ",
		height=0.27778,
		label="Biscuit pileup",
		pos="391,180",
		rects="349.5,170.5,432.5,189.5",
		width=1.1528];
	reference_index -> pileup	[_draw_="c 7 -#000000 B 13 258 313.79 270.07 297.86 298.87 262.59 331 243 340.96 236.93 347.35 242.83 356 235 369.28 222.97 361.52 212.53 \
372 198 372.71 197.01 373.49 196.04 374.31 195.09 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 375.85 197.02 379.06 190.34 372.38 193.56 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 351 245.6 0 40 9 -reference ",
		label=reference,
		lp="351,247.5",
		pos="e,380.13,189.27 258,313.79 270.07,297.86 298.87,262.59 331,243 340.96,236.93 347.35,242.83 356,235 369.28,222.97 361.52,212.53 372,\
198 372.71,197.01 373.49,196.04 374.31,195.09"];
	bisulfite_qc	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 533.5 125.5 533.5 144.5 634.5 144.5 634.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 584 132.5 0 85 18 -Bisulfite QC tools ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="Bisulfite QC tools",
		pos="584,135",
		rects="533.5,125.5,634.5,144.5",
		width=1.4028];
	reference_index -> bisulfite_qc	[_draw_="c 7 -#000000 B 10 276.56 313.66 294.61 305.79 316 292.03 316 271 316 271 316 271 316 179 316 133.2 466.52 150.18 525.4 145.37 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 525.52 147.82 532.2 144.61 524.97 142.95 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 336 223.1 0 40 9 -reference ",
		label=reference,
		lp="336,225",
		pos="e,533.71,144.44 276.56,313.66 294.61,305.79 316,292.03 316,271 316,271 316,271 316,179 316,133.2 466.52,150.18 525.4,145.37"];
	reference_index -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 13 274.24 313.58 283.35 310.44 294.06 307.12 304 305 337.22 297.91 348.16 308.81 380 297 386.59 294.56 386.37 290.33 \
393 288 413.95 280.64 458.82 276.45 504.22 274.08 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 504.32 276.53 511.19 273.74 504.08 271.64 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 426 290.6 0 66 15 -reference_index ",
		label=reference_index,
		lp="426,292.5",
		pos="e,512.7,273.66 274.24,313.58 283.35,310.44 294.06,307.12 304,305 337.22,297.91 348.16,308.81 380,297 386.59,294.56 386.37,290.33 \
393,288 413.95,280.64 458.82,276.45 504.22,274.08"];
	vcf2bed	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 61 125.5 61 144.5 443 144.5 443 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 252 132.5 0 366 77 -convert a biscuit pileup vcf to a bed and bedgraph file, via a wrapper script ",
		height=0.27778,
		label="convert a biscuit pileup vcf to a bed and bedgraph file, via a wrapper script",
		pos="252,135",
		rects="61,125.5,443,144.5",
		width=5.3056];
	reference_index -> vcf2bed	[_draw_="c 7 -#000000 B 10 252 313.7 252 303.6 252 286.05 252 271 252 271 252 271 252 179 252 170.31 252 160.63 252 152.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 254.45 152.76 252 145.76 249.55 152.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 272 223.1 0 40 9 -reference ",
		label=reference,
		lp="272,225",
		pos="e,252,144.24 252,313.7 252,303.6 252,286.05 252,271 252,271 252,271 252,179 252,170.31 252,160.63 252,152.65"];
	bam_to_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 437 170.5 437 189.5 577 189.5 577 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 507 177.5 0 124 22 -BAM to CRAM conversion ",
		height=0.27778,
		label="BAM to CRAM conversion",
		pos="507,180",
		rects="437,170.5,577,189.5",
		width=1.9444];
	reference_index -> bam_to_cram	[_draw_="c 7 -#000000 B 10 280.58 313.53 293.05 309.33 307.61 303.71 320 297 384.81 261.92 387.38 231.53 453 198 457.21 195.85 461.73 193.91 \
466.32 192.17 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 466.82 194.59 472.61 189.95 465.19 189.97 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 410 245.6 0 40 9 -reference ",
		label=reference,
		lp="410,247.5",
		pos="e,474.03,189.45 280.58,313.53 293.05,309.33 307.61,303.71 320,297 384.81,261.92 387.38,231.53 453,198 457.21,195.85 461.73,193.91 \
466.32,192.17"];
	trimming_adapters -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 10 386.16 313.54 396.12 310.6 407.51 307.44 418 305 438.89 300.14 491.82 291.38 513 288 528.88 285.47 545.96 282.94 \
562.14 280.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 562.42 283.08 569.01 279.68 561.73 278.23 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 531.5 290.6 0 37 8 -adapters ",
		label=adapters,
		lp="531.5,292.5",
		pos="e,570.51,279.46 386.16,313.54 396.12,310.6 407.51,307.44 418,305 438.89,300.14 491.82,291.38 513,288 528.88,285.47 545.96,282.94 \
562.14,280.64"];
	trimming_adapter_min_overlap -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 914.08 313.55 883.24 305.91 835.76 294.84 794 288 776.31 285.1 757.43 282.59 739.08 280.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 739.43 278.03 732.19 279.67 738.87 282.89 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 883 290.6 0 86 19 -adapter_min_overlap ",
		label=adapter_min_overlap,
		lp="883,292.5",
		pos="e,730.69,279.5 914.08,313.55 883.24,305.91 835.76,294.84 794,288 776.31,285.1 757.43,282.59 739.08,280.45"];
	bedgraph_to_bigwig	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 168 80.5 168 99.5 336 99.5 336 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 252 87.5 0 152 29 -bedGraph to bigwig conversion ",
		height=0.27778,
		label="bedGraph to bigwig conversion",
		pos="252,90",
		rects="168,80.5,336,99.5",
		width=2.3333];
	reference_sizes -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 10 60.64 313.78 57.97 303.76 54 286.28 54 271 54 271 54 271 54 134 54 110.46 108.12 99.78 159.77 94.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 159.76 97.41 166.52 94.36 159.33 92.53 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 86.5 200.6 0 65 15 -reference_sizes ",
		label=reference_sizes,
		lp="86.5,202.5",
		pos="e,168.03,94.223 60.635,313.78 57.969,303.76 54,286.28 54,271 54,271 54,271 54,134 54,110.46 108.12,99.781 159.77,94.949"];
	read_group_id -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 10 1058.21 313.53 1050.13 310.5 1040.74 307.27 1032 305 986.24 293.13 973.99 293.15 927 288 873.74 282.16 814.81 \
278.25 763.84 275.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 764.03 273.22 756.92 275.32 763.79 278.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1025 290.6 0 58 13 -read_group_id ",
		label=read_group_id,
		lp="1025,292.5",
		pos="e,755.4,275.25 1058.2,313.53 1050.1,310.5 1040.7,307.27 1032,305 986.24,293.13 973.99,293.15 927,288 873.74,282.16 814.81,278.25 \
763.84,275.67"];
	QCannotation -> bisulfite_qc	[_draw_="c 7 -#000000 B 10 1274.92 313.55 1256.47 305.76 1235 292.14 1235 271 1235 271 1235 271 1235 179 1235 149.46 802.58 139.51 642.59 \
136.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 642.82 134.39 635.78 136.73 642.74 139.29 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1263.5 223.1 0 57 12 -QCannotation ",
		label=QCannotation,
		lp="1263.5,225",
		pos="e,634.27,136.7 1274.9,313.55 1256.5,305.76 1235,292.14 1235,271 1235,271 1235,271 1235,179 1235,149.46 802.58,139.51 642.59,136.84"];
	trimming_min_readlength -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 768.77 313.53 753 306.03 728.84 295.18 707 288 699.74 285.61 691.96 283.43 684.3 281.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 684.9 279.1 677.52 279.81 683.73 283.86 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 761 290.6 0 64 14 -min_readlength ",
		label=min_readlength,
		lp="761,292.5",
		pos="e,676.05,279.45 768.77,313.53 753,306.03 728.84,295.18 707,288 699.74,285.61 691.96,283.43 684.3,281.47"];
	trimming_adapter_trim_end -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 4 634 313.58 634 306.52 634 296.24 634 287.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 636.45 287.78 634 280.78 631.55 287.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 670 290.6 0 72 16 -adapter_trim_end ",
		label=adapter_trim_end,
		lp="670,292.5",
		pos="e,634,279.26 634,313.58 634,306.52 634,296.24 634,287.55"];
	pileup -> vcf	[_draw_="c 7 -#000000 B 7 412.55 170.53 423.61 165 436.17 156.63 443 145 458.05 119.38 456 83.34 453.06 62.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 455.52 62.43 451.99 55.91 450.68 63.21 ",
		pos="e,451.75,54.413 412.55,170.53 423.61,165 436.17,156.63 443,145 458.05,119.38 456,83.342 453.06,62.556"];
	pileup -> bisulfite_qc	[_draw_="c 7 -#000000 B 4 429.13 170.5 460.32 163.56 504.55 153.7 537.76 146.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 538.17 148.72 544.47 144.81 537.11 143.94 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 510.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="510.5,157.5",
		pos="e,545.95,144.48 429.13,170.5 460.32,163.56 504.55,153.7 537.76,146.3"];
	pileup -> vcf2bed	[_draw_="c 7 -#000000 B 4 363.54 170.5 341.74 163.76 311.1 154.28 287.45 146.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 288.26 144.65 280.85 144.93 286.81 149.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 339.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="339.5,157.5",
		pos="e,279.4,144.48 363.54,170.5 341.74,163.76 311.1,154.28 287.45,146.97"];
	index_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 457.5 80.5 457.5 99.5 576.5 99.5 576.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 517 87.5 0 103 19 -samtools index cram ",
		height=0.27778,
		label="samtools index cram",
		pos="517,90",
		rects="457.5,80.5,576.5,99.5",
		width=1.6528];
	index_cram -> cram	[_draw_="c 7 -#000000 B 4 511.99 80.71 508.68 75.24 504.24 67.9 500.3 61.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 502.5 60.28 496.78 55.56 498.31 62.82 ",
		pos="e,496,54.265 511.99,80.709 508.68,75.236 504.24,67.899 500.3,61.381"];
	bedgraph_to_bigwig -> cpg_bedgraph	[_draw_="c 7 -#000000 B 4 270.18 80.5 283.91 74.09 302.95 65.19 318.25 58.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 319.19 60.3 324.49 55.12 317.11 55.86 ",
		pos="e,325.86,54.478 270.18,80.505 283.91,74.085 302.95,65.188 318.25,58.036"];
	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 491 215.5 491 234.5 601 234.5 601 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 546 222.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="546,225",
		rects="491,215.5,601,234.5",
		width=1.5278];
	merge -> pileup	[_draw_="c 7 -#000000 B 4 515.38 215.5 490.75 208.67 456.01 199.03 429.5 191.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 430.42 189.39 423.02 189.88 429.11 194.11 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 491.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="491.5,202.5",
		pos="e,421.56,189.48 515.38,215.5 490.75,208.67 456.01,199.03 429.5,191.68"];
	merge -> bisulfite_qc	[_draw_="c 7 -#000000 B 7 556.43 215.63 563.47 209.36 572.3 200.15 577 190 582.4 178.34 584.04 163.84 584.39 152.8 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 586.84 153 584.43 145.99 581.94 152.98 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 591.5 178.1 0 19 3 -bam ",
		label=bam,
		lp="591.5,180",
		pos="e,584.43,144.48 556.43,215.63 563.47,209.36 572.3,200.15 577,190 582.4,178.34 584.04,163.84 584.39,152.8"];
	merge -> bam_to_cram	[_draw_="c 7 -#000000 B 4 538.48 215.71 533.3 210 526.28 202.26 520.18 195.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 522.03 193.93 515.51 190.39 518.4 197.22 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 538.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="538.5,202.5",
		pos="e,514.5,189.27 538.48,215.71 533.3,210 526.28,202.26 520.18,195.54"];
	bisulfite_qc -> gathered_directory	[_draw_="c 7 -#000000 B 7 583.1 125.55 581.92 114.9 579.69 96.04 577 80 576.03 74.23 574.79 67.94 573.62 62.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 576.09 62.16 572.22 55.83 571.3 63.19 ",
		pos="e,571.9,54.351 583.1,125.55 581.92,114.9 579.69,96.036 577,80 576.03,74.227 574.79,67.941 573.62,62.361"];
	bam_to_trimmed_fastq_and_biscuit_alignments -> merge	[_draw_="c 7 -#000000 B 4 616.61 260.5 603.48 254.09 585.27 245.19 570.63 238.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 572.07 236.01 564.71 235.14 569.92 240.42 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 608.5 245.6 0 23 4 -bams ",
		label=bams,
		lp="608.5,247.5",
		pos="e,563.35,234.48 616.61,260.5 603.48,254.09 585.27,245.19 570.63,238.04"];
	vcf2bed -> cpgs	[_draw_="c 7 -#000000 B 7 278.41 125.62 295.86 119.59 318.94 110.66 338 100 358.86 88.33 380.5 71.33 394.54 59.53 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 395.89 61.59 399.63 55.19 392.71 57.86 ",
		pos="e,400.78,54.203 278.41,125.62 295.86,119.59 318.94,110.66 338,100 358.86,88.332 380.5,71.328 394.54,59.53"];
	vcf2bed -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 4 252 125.71 252 120.59 252 113.85 252 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 254.45 107.78 252 100.78 249.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 272 110.6 0 40 8 -bedgraph ",
		label=bedgraph,
		lp="272,112.5",
		pos="e,252,99.265 252,125.71 252,120.59 252,113.85 252,107.67"];
	bam_to_cram -> index_cram	[_draw_="c 7 -#000000 B 7 507.36 170.56 507.88 159.91 509 141.04 511 125 511.72 119.22 512.76 112.94 513.77 107.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 516.11 108.17 515 100.84 511.29 107.26 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 521.5 133.1 0 21 4 -cram ",
		label=cram,
		lp="521.5,135",
		pos="e,515.28,99.348 507.36,170.56 507.88,159.91 509,141.04 511,125 511.72,119.22 512.76,112.94 513.77,107.36"];
}
