digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 593 436 593 436 0 ",
		bb="0,0,436,593",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 24 530 24 585 415 585 415 530 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 74 573 0 84 15 -Workflow Inputs ",
			bb="24,530,415,585",
			label="Workflow Inputs",
			lheight=0.15,
			lp="74,575.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		insert_size	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 260.5 538.5 260.5 557.5 329.5 557.5 329.5 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 295 545.5 0 53 11 -insert_size ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=insert_size,
			pos="295,548",
			rects="260.5,538.5,329.5,557.5",
			width=0.95833];
		interval_list	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 182 538.5 182 557.5 256 557.5 256 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 219 545.5 0 58 13 -interval_list ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=interval_list,
			pos="219,548",
			rects="182,538.5,256,557.5",
			width=1.0278];
		normal_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 100 538.5 100 557.5 178 557.5 178 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 139 545.5 0 62 10 -normal_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_bam,
			pos="139,548",
			rects="100,538.5,178,557.5",
			width=1.0833];
		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 32.5 538.5 32.5 557.5 95.5 557.5 95.5 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 64 545.5 0 47 9 -reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference,
			pos="64,548",
			rects="32.5,538.5,95.5,557.5",
			width=0.875];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 333.5 538.5 333.5 557.5 406.5 557.5 406.5 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 370 545.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="370,548",
			rects="333.5,538.5,406.5,557.5",
			width=1.0139];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 66 8 66 63 241 63 241 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 120 15 0 92 16 -Workflow Outputs ",
			bb="66,8,241,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="120,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		unfiltered_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 74.5 35.5 74.5 54.5 157.5 54.5 157.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 116 42.5 0 67 14 -unfiltered_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=unfiltered_vcf,
			pos="116,45",
			rects="74.5,35.5,157.5,54.5",
			width=1.1528];
		filtered_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 161.5 35.5 161.5 54.5 232.5 54.5 232.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 197 42.5 0 55 12 -filtered_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=filtered_vcf,
			pos="197,45",
			rects="161.5,35.5,232.5,54.5",
			width=0.98611];
	}
	pindel_cat	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 141.5 440.5 141.5 459.5 274.5 459.5 274.5 440.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 208 447.5 0 117 21 -Per-chromosome pindel ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="Per-chromosome pindel",
		pos="208,450",
		rects="141.5,440.5,274.5,459.5",
		width=1.8472];
	insert_size -> pindel_cat	[_draw_="c 7 -#000000 B 10 299.15 538.91 301.37 534.13 303.87 527.88 305 522 308.2 505.38 305.22 499.19 296 485 289.33 474.73 279.06 467.56 \
267.85 462.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 268.79 460.29 261.38 459.98 266.98 464.85 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 327 493.1 0 44 11 -insert_size ",
		label=insert_size,
		lp="327,495",
		pos="e,259.97,459.42 299.15,538.91 301.37,534.13 303.87,527.88 305,522 308.2,505.38 305.22,499.19 296,485 289.33,474.73 279.06,467.56 \
267.85,462.56"];
	region_filter	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 67.5 215.5 67.5 234.5 208.5 234.5 208.5 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 138 222.5 0 125 25 -SelectVariants (GATK 3.6) ",
		height=0.27778,
		label="SelectVariants (GATK 3.6)",
		pos="138,225",
		rects="67.5,215.5,208.5,234.5",
		width=1.9583];
	interval_list -> region_filter	[_draw_="c 7 -#000000 B 16 239.09 538.58 254.14 532.22 272.67 524.21 276 522 285.17 515.92 286.6 513.14 294 505 297.41 501.25 301 501.07 \
301 496 301 496 301 496 301 269 301 249.79 258.15 238.98 216.4 233 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 216.84 230.59 209.57 232.07 216.18 235.44 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 324.5 380.6 0 47 13 -interval_list ",
		label=interval_list,
		lp="324.5,382.5",
		pos="e,208.07,231.87 239.09,538.58 254.14,532.22 272.67,524.21 276,522 285.17,515.92 286.6,513.14 294,505 297.41,501.25 301,501.07 301,\
496 301,496 301,496 301,269 301,249.79 258.15,238.98 216.4,233"];
	get_chromosome_list	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 172 485.5 172 504.5 294 504.5 294 485.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 233 492.5 0 106 19 -get_chromosome_list ",
		height=0.27778,
		label=get_chromosome_list,
		pos="233,495",
		rects="172,485.5,294,504.5",
		width=1.6944];
	interval_list -> get_chromosome_list	[_draw_="c 7 -#000000 B 4 221.31 538.58 223.27 531.45 226.13 521.02 228.53 512.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 230.84 513.12 230.33 505.72 226.11 511.83 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 251.5 515.6 0 47 13 -interval_list ",
		label=interval_list,
		lp="251.5,517.5",
		pos="e,230.73,504.26 221.31,538.58 223.27,531.45 226.13,521.02 228.53,512.27"];
	normal_bam -> pindel_cat	[_draw_="c 7 -#000000 B 7 132.03 538.7 122.36 526.14 107.33 501.95 119 485 126.16 474.61 136.95 467.39 148.58 462.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 149.25 464.74 154.9 459.93 147.49 460.17 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 144.5 493.1 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="144.5,495",
		pos="e,156.31,459.39 132.03,538.7 122.36,526.14 107.33,501.95 119,485 126.16,474.61 136.95,467.39 148.58,462.38"];
	reference -> region_filter	[_draw_="c 7 -#000000 B 10 59.35 538.62 54.32 528.74 47 511.68 47 496 47 496 47 496 47 269 47 253.67 57.68 243.8 71.73 237.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 72.33 239.84 77.93 234.99 70.52 235.29 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 67 380.6 0 40 9 -reference ",
		label=reference,
		lp="67,382.5",
		pos="e,79.339,234.43 59.355,538.62 54.321,528.74 47,511.68 47,496 47,496 47,496 47,269 47,253.67 57.682,243.8 71.727,237.45"];
	somaticfilter	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 73.5 350.5 73.5 369.5 202.5 369.5 202.5 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 138 357.5 0 113 24 -pindel somatic filter v1 ",
		height=0.27778,
		label="pindel somatic filter v1",
		pos="138,360",
		rects="73.5,350.5,202.5,369.5",
		width=1.7917];
	reference -> somaticfilter	[_draw_="c 7 -#000000 B 7 62.83 538.78 61.39 526.73 59.75 503.65 65 485 77.2 441.6 108.48 397.77 125.87 375.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 127.57 377.47 130.04 370.48 123.75 374.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 104 448.1 0 40 9 -reference ",
		label=reference,
		lp="104,450",
		pos="e,130.99,369.3 62.825,538.78 61.391,526.73 59.755,503.65 65,485 77.203,441.6 108.48,397.77 125.87,375.68"];
	filter	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 87.5 80.5 87.5 99.5 188.5 99.5 188.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 138 87.5 0 85 18 -fp_filter workflow ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="fp_filter workflow",
		pos="138,90",
		rects="87.5,80.5,188.5,99.5",
		width=1.4028];
	reference -> filter	[_draw_="c 7 -#000000 B 10 39.44 538.66 21.39 530.79 0 517.03 0 496 0 496 0 496 0 134 0 116.25 42.13 104.99 79.83 98.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 79.79 100.95 86.3 97.39 78.99 96.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 20 313.1 0 40 9 -reference ",
		label=reference,
		lp="20,315",
		pos="e,87.788,97.143 39.439,538.66 21.391,530.79 0,517.03 0,496 0,496 0,496 0,134 0,116.25 42.125,104.99 79.827,98.465"];
	reference -> pindel_cat	[_draw_="c 7 -#000000 B 7 62.84 538.67 61.53 525.63 61.01 500.29 74 485 82.91 474.51 110.73 466.6 138.73 461.06 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 139.1 463.48 145.52 459.77 138.18 458.67 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 94 493.1 0 40 9 -reference ",
		label=reference,
		lp="94,495",
		pos="e,147.01,459.49 62.845,538.67 61.526,525.63 61.007,500.29 74,485 82.913,474.51 110.73,466.6 138.73,461.06"];
	tumor_bam -> filter	[_draw_="c 7 -#000000 B 10 385.39 538.66 399.1 529.99 417 515.02 417 496 417 496 417 496 417 134 417 111.88 278.22 99.57 196.42 94.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 196.85 91.81 189.71 93.81 196.54 96.7 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 426.5 313.1 0 19 3 -bam ",
		label=bam,
		lp="426.5,315",
		pos="e,188.2,93.714 385.39,538.66 399.1,529.99 417,515.02 417,496 417,496 417,496 417,134 417,111.88 278.22,99.572 196.42,94.239"];
	tumor_bam -> pindel_cat	[_draw_="c 7 -#000000 B 7 369.74 538.89 368.87 525.68 365.2 499.54 350 485 339.15 474.63 307.96 466.57 277.56 460.92 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 278.26 458.55 270.93 459.72 277.39 463.37 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 385 493.1 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="385,495",
		pos="e,269.44,459.46 369.74,538.89 368.87,525.68 365.2,499.54 350,485 339.15,474.63 307.96,466.57 277.56,460.92"];
	bgzip	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 105.5 305.5 105.5 324.5 170.5 324.5 170.5 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 138 312.5 0 49 9 -bgzip VCF ",
		height=0.27778,
		label="bgzip VCF",
		pos="138,315",
		rects="105.5,305.5,170.5,324.5",
		width=0.90278];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 107 260.5 107 279.5 169 279.5 169 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 138 267.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="138,270",
		rects="107,260.5,169,279.5",
		width=0.86111];
	bgzip -> index	[_draw_="c 7 -#000000 B 4 138 305.71 138 300.59 138 293.85 138 287.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 140.45 287.78 138 280.78 135.55 287.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 144.5 290.6 0 13 3 -vcf ",
		label=vcf,
		lp="144.5,292.5",
		pos="e,138,279.27 138,305.71 138,300.59 138,293.85 138,287.67"];
	remove_end_tags	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 73.5 170.5 73.5 189.5 202.5 189.5 202.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 138 177.5 0 113 20 -remove END INFO tags ",
		height=0.27778,
		label="remove END INFO tags",
		pos="138,180",
		rects="73.5,170.5,202.5,189.5",
		width=1.7917];
	region_filter -> remove_end_tags	[_draw_="c 7 -#000000 B 4 138 215.71 138 210.59 138 203.85 138 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 140.45 197.78 138 190.78 135.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 144.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="144.5,202.5",
		pos="e,138,189.27 138,215.71 138,210.59 138,203.85 138,197.67"];
	somaticfilter -> bgzip	[_draw_="c 7 -#000000 B 4 138 350.71 138 345.59 138 338.85 138 332.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 140.45 332.78 138 325.78 135.55 332.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 144.5 335.6 0 13 4 -file ",
		label=file,
		lp="144.5,337.5",
		pos="e,138,324.27 138,350.71 138,345.59 138,338.85 138,332.67"];
	filter -> unfiltered_vcf	[_draw_="c 7 -#000000 B 4 133.76 80.71 131.02 75.36 127.37 68.22 124.09 61.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 126.29 60.73 120.92 55.61 121.93 62.96 ",
		pos="e,120.23,54.265 133.76,80.709 131.02,75.355 127.37,68.217 124.09,61.807"];
	filter -> filtered_vcf	[_draw_="c 7 -#000000 B 4 149.66 80.5 157.9 74.5 169.12 66.32 178.57 59.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 179.93 61.47 184.14 55.37 177.04 57.51 ",
		pos="e,185.37,54.478 149.66,80.505 157.9,74.497 169.12,66.32 178.57,59.435"];
	get_chromosome_list -> pindel_cat	[_draw_="c 7 -#000000 B 4 228.18 485.71 225 480.24 220.73 472.9 216.94 466.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 219.2 465.39 213.57 460.57 214.97 467.86 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 249 470.6 0 54 10 -chromosome ",
		label=chromosome,
		lp="249,472.5",
		pos="e,212.81,459.27 228.18,485.71 225,480.24 220.73,472.9 216.94,466.38"];
	reindex	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 107 125.5 107 144.5 169 144.5 169 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 138 132.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="138,135",
		rects="107,125.5,169,144.5",
		width=0.86111];
	remove_end_tags -> reindex	[_draw_="c 7 -#000000 B 4 138 170.71 138 165.59 138 158.85 138 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 140.45 152.78 138 145.78 135.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 144.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="144.5,157.5",
		pos="e,138,144.27 138,170.71 138,165.59 138,158.85 138,152.67"];
	index -> region_filter	[_draw_="c 7 -#000000 B 4 138 260.71 138 255.59 138 248.85 138 242.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 140.45 242.78 138 235.78 135.55 242.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 144.5 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="144.5,247.5",
		pos="e,138,234.27 138,260.71 138,255.59 138,248.85 138,242.67"];
	cat_all	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 123.5 395.5 123.5 414.5 172.5 414.5 172.5 395.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 148 402.5 0 33 7 -cat_all ",
		height=0.27778,
		label=cat_all,
		pos="148,405",
		rects="123.5,395.5,172.5,414.5",
		width=0.68056];
	cat_all -> somaticfilter	[_draw_="c 7 -#000000 B 4 146.07 395.71 144.85 390.47 143.24 383.53 141.78 377.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 144.24 377 140.27 370.74 139.46 378.11 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 192 380.6 0 98 21 -pindel_output_summary ",
		label=pindel_output_summary,
		lp="192,382.5",
		pos="e,139.92,369.27 146.07,395.71 144.85,390.47 143.24,383.53 141.78,377.24"];
	reindex -> filter	[_draw_="c 7 -#000000 B 4 138 125.71 138 120.59 138 113.85 138 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 140.45 107.78 138 100.78 135.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 144.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="144.5,112.5",
		pos="e,138,99.265 138,125.71 138,120.59 138,113.85 138,107.67"];
	pindel_cat -> cat_all	[_draw_="c 7 -#000000 B 4 196.15 440.5 187.76 434.5 176.35 426.32 166.75 419.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 168.18 417.45 161.06 415.36 165.32 421.43 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 235.5 425.6 0 105 22 -chromosome_pindel_outs ",
		label=chromosome_pindel_outs,
		lp="235.5,427.5",
		pos="e,159.83,414.48 196.15,440.5 187.76,434.5 176.35,426.32 166.75,419.43"];
}