digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 368 413 368 413 0 ",
		bb="0,0,413,368",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 15 305 15 360 391 360 391 305 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 65 348 0 84 15 -Workflow Inputs ",
			bb="15,305,391,360",
			label="Workflow Inputs",
			lheight=0.15,
			lp="65,350.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		germline_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 65 313.5 65 332.5 145 332.5 145 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 105 320.5 0 64 12 -germline_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=germline_vcf,
			pos="105,323",
			rects="65,313.5,145,332.5",
			width=1.1111];
		bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 23 313.5 23 332.5 61 332.5 61 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 42 320.5 0 22 3 -bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=bam,
			pos="42,323",
			rects="23,313.5,61,332.5",
			width=0.52778];
		somatic_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 149 313.5 149 332.5 225 332.5 225 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 187 320.5 0 60 11 -somatic_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=somatic_vcf,
			pos="187,323",
			rects="149,313.5,225,332.5",
			width=1.0556];
		reference_dict	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 229 313.5 229 332.5 315 332.5 315 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 272 320.5 0 70 14 -reference_dict ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_dict,
			pos="272,323",
			rects="229,313.5,315,332.5",
			width=1.1944];
		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 319.5 313.5 319.5 332.5 382.5 332.5 382.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 351 320.5 0 47 9 -reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference,
			pos="351,323",
			rects="319.5,313.5,382.5,332.5",
			width=0.875];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 209 8 209 63 317 63 317 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 263 15 0 92 16 -Workflow Outputs ",
			bb="209,8,317,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="263,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		phased_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 227 35.5 227 54.5 299 54.5 299 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 263 42.5 0 56 10 -phased_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=phased_vcf,
			pos="263,45",
			rects="227,35.5,299,54.5",
			width=1];
	}
	combine_variants	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 7.5 260.5 7.5 279.5 298.5 279.5 298.5 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 153 267.5 0 275 52 -Combine germline and somatic vcf for pVACseq phasing ",
		height=0.27778,
		label="Combine germline and somatic vcf for pVACseq phasing",
		pos="153,270",
		rects="7.5,260.5,298.5,279.5",
		width=4.0417];
	germline_vcf -> combine_variants	[_draw_="c 7 -#000000 B 7 105.53 313.51 106.41 305.99 108.77 295.14 115 288 116.24 286.58 117.61 285.28 119.09 284.08 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 120.32 286.2 124.81 280.3 117.62 282.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 141 290.6 0 52 12 -germline_vcf ",
		label=germline_vcf,
		lp="141,292.5",
		pos="e,126.07,279.47 105.53,313.51 106.41,305.99 108.77,295.14 115,288 116.24,286.58 117.61,285.28 119.09,284.08"];
	phase_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 202.5 125.5 202.5 144.5 323.5 144.5 323.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 263 132.5 0 105 19 -Read-backed phasing ",
		height=0.27778,
		label="Read-backed phasing",
		pos="263,135",
		rects="202.5,125.5,323.5,144.5",
		width=1.6806];
	bam -> phase_vcf	[_draw_="c 7 -#000000 B 10 28.71 313.61 16.41 304.69 0 289.35 0 271 0 271 0 271 0 179 0 159.3 116.38 146.78 194.31 140.61 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 194.36 143.06 201.15 140.08 193.98 138.18 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 9.5 223.1 0 19 3 -bam ",
		label=bam,
		lp="9.5,225",
		pos="e,202.66,139.96 28.711,313.61 16.406,304.69 0,289.35 0,271 0,271 0,271 0,179 0,159.3 116.38,146.78 194.31,140.61"];
	somatic_vcf -> combine_variants	[_draw_="c 7 -#000000 B 7 182.94 313.6 179.38 306.53 173.86 296.28 168 288 167.48 287.26 166.93 286.52 166.36 285.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 168.34 284.32 161.97 280.52 164.57 287.46 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 198.5 290.6 0 49 11 -somatic_vcf ",
		label=somatic_vcf,
		lp="198.5,292.5",
		pos="e,161,279.35 182.94,313.6 179.38,306.53 173.86,296.28 168,288 167.48,287.26 166.93,286.52 166.36,285.78"];
	sort	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 233.5 215.5 233.5 234.5 292.5 234.5 292.5 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 263 222.5 0 43 8 -Sort VCF ",
		height=0.27778,
		label="Sort VCF",
		pos="263,225",
		rects="233.5,215.5,292.5,234.5",
		width=0.81944];
	reference_dict -> sort	[_draw_="c 7 -#000000 B 7 280.3 313.58 290.99 301.67 307.27 279.19 299 260 295.53 251.95 289.11 244.91 282.64 239.37 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 284.46 237.68 277.45 235.27 281.43 241.53 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 330.5 268.1 0 59 14 -reference_dict ",
		label=reference_dict,
		lp="330.5,270",
		pos="e,276.26,234.33 280.3,313.58 290.99,301.67 307.27,279.19 299,260 295.53,251.95 289.11,244.91 282.64,239.37"];
	reference -> phase_vcf	[_draw_="c 7 -#000000 B 10 357.01 313.81 363.53 304.1 373 287.2 373 271 373 271 373 271 373 179 373 157.18 353.99 146.07 331.77 140.53 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 332.31 138.14 324.95 139.06 331.27 142.93 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 393 223.1 0 40 9 -reference ",
		label=reference,
		lp="393,225",
		pos="e,323.47,138.74 357.01,313.81 363.53,304.1 373,287.2 373,271 373,271 373,271 373,179 373,157.18 353.99,146.07 331.77,140.53"];
	reference -> combine_variants	[_draw_="c 7 -#000000 B 7 335.67 313.54 329.67 310.5 322.65 307.27 316 305 284.87 294.37 249.2 286.48 219.19 280.98 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 219.69 278.58 212.37 279.76 218.83 283.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 309 290.6 0 40 9 -reference ",
		label=reference,
		lp="309,292.5",
		pos="e,210.88,279.5 335.67,313.54 329.67,310.5 322.65,307.27 316,305 284.87,294.37 249.2,286.48 219.19,280.98"];
	bgzip_and_index_phased_vcf	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 205 80.5 205 99.5 321 99.5 321 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 263 87.5 0 100 19 -bgzip and index VCF ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="bgzip and index VCF",
		pos="263,90",
		rects="205,80.5,321,99.5",
		width=1.6111];
	bgzip_and_index_phased_vcf -> phased_vcf	[_draw_="c 7 -#000000 B 4 263 80.71 263 75.59 263 68.85 263 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 265.45 62.78 263 55.78 260.55 62.78 ",
		pos="e,263,54.265 263,80.709 263,75.593 263,68.848 263,62.666"];
	bgzip_and_index	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 205 170.5 205 189.5 321 189.5 321 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 263 177.5 0 100 19 -bgzip and index VCF ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="bgzip and index VCF",
		pos="263,180",
		rects="205,170.5,321,189.5",
		width=1.6111];
	bgzip_and_index -> phase_vcf	[_draw_="c 7 -#000000 B 4 263 170.71 263 165.59 263 158.85 263 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 265.45 152.78 263 145.78 260.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 269.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="269.5,157.5",
		pos="e,263,144.27 263,170.71 263,165.59 263,158.85 263,152.67"];
	phase_vcf -> bgzip_and_index_phased_vcf	[_draw_="c 7 -#000000 B 4 263 125.71 263 120.59 263 113.85 263 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 265.45 107.78 263 100.78 260.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 269.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="269.5,112.5",
		pos="e,263,99.265 263,125.71 263,120.59 263,113.85 263,107.67"];
	combine_variants -> sort	[_draw_="c 7 -#000000 B 4 174.73 260.5 191.53 253.94 214.96 244.78 233.46 237.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 234.28 239.86 239.9 235.03 232.49 235.3 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 223.5 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="223.5,247.5",
		pos="e,241.31,234.48 174.73,260.5 191.53,253.94 214.96,244.78 233.46,237.55"];
	sort -> bgzip_and_index	[_draw_="c 7 -#000000 B 4 263 215.71 263 210.59 263 203.85 263 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 265.45 197.78 263 190.78 260.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 269.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="269.5,202.5",
		pos="e,263,189.27 263,215.71 263,210.59 263,203.85 263,197.67"];
}