digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 458 521 458 521 0 ",
		bb="0,0,521,458",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 395 8 450 513 450 513 395 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 438 0 84 15 -Workflow Inputs ",
			bb="8,395,513,450",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,440.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		normal_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 403.5 16 422.5 94 422.5 94 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 55 410.5 0 62 10 -normal_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_bam,
			pos="55,413",
			rects="16,403.5,94,422.5",
			width=1.0833];
		filter_docm_variants	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 389 403.5 389 422.5 505 422.5 505 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 447 410.5 0 100 20 -filter_docm_variants ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=filter_docm_variants,
			pos="447,413",
			rects="389,403.5,505,422.5",
			width=1.6111];
		docm_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 98 403.5 98 422.5 162 422.5 162 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 130 410.5 0 48 8 -docm_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=docm_vcf,
			pos="130,413",
			rects="98,403.5,162,422.5",
			width=0.88889];
		interval_list	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 166 403.5 166 422.5 240 422.5 240 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 203 410.5 0 58 13 -interval_list ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=interval_list,
			pos="203,413",
			rects="166,403.5,240,422.5",
			width=1.0278];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 311.5 403.5 311.5 422.5 384.5 422.5 384.5 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 348 410.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="348,413",
			rects="311.5,403.5,384.5,422.5",
			width=1.0139];
		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 244.5 403.5 244.5 422.5 307.5 422.5 307.5 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 276 410.5 0 47 9 -reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference,
			pos="276,413",
			rects="244.5,403.5,307.5,422.5",
			width=0.875];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 262 8 262 63 388 63 388 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 316 15 0 92 16 -Workflow Outputs ",
			bb="262,8,388,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="316,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		docm_variants_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 270.5 35.5 270.5 54.5 379.5 54.5 379.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 325 42.5 0 93 17 -docm_variants_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=docm_variants_vcf,
			pos="325,45",
			rects="270.5,35.5,379.5,54.5",
			width=1.5139];
	}
	docm_filter	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 222.5 170.5 222.5 189.5 427.5 189.5 427.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 325 177.5 0 189 38 -Filter variants from the DoCM detector ",
		height=0.27778,
		label="Filter variants from the DoCM detector",
		pos="325,180",
		rects="222.5,170.5,427.5,189.5",
		width=2.8472];
	normal_bam -> docm_filter	[_draw_="c 7 -#000000 B 10 58.55 403.51 62.4 393.52 68 376.35 68 361 68 361 68 361 68 224 68 208.19 144.66 196.82 214.24 189.76 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 214.46 192.2 221.18 189.07 213.97 187.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 93.5 290.6 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="93.5,292.5",
		pos="e,222.69,188.92 58.552,403.51 62.401,393.52 68,376.35 68,361 68,361 68,361 68,224 68,208.19 144.66,196.82 214.24,189.76"];
	GATK_haplotype_caller	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 129 350.5 129 369.5 279 369.5 279 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 204 357.5 0 134 26 -HaplotypeCaller (GATK 3.6) ",
		height=0.27778,
		label="HaplotypeCaller (GATK 3.6)",
		pos="204,360",
		rects="129,350.5,279,369.5",
		width=2.0833];
	normal_bam -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 7 63.26 403.54 71.53 395.6 85.01 384.07 99 378 106.12 374.91 113.72 372.38 121.47 370.31 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 121.57 372.81 127.78 368.75 120.39 368.05 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 124.5 380.6 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="124.5,382.5",
		pos="e,129.25,368.38 63.255,403.54 71.526,395.6 85.006,384.07 99,378 106.12,374.91 113.72,372.38 121.47,370.31"];
	filter_docm_variants -> docm_filter	[_draw_="c 7 -#000000 B 10 440.99 403.81 434.47 394.1 425 377.2 425 361 425 361 425 361 425 224 425 208.93 415.3 199.08 401.94 192.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 402.98 190.43 395.58 190.01 401.1 194.96 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 466 290.6 0 82 20 -filter_docm_variants ",
		label=filter_docm_variants,
		lp="466,292.5",
		pos="e,394.18,189.43 440.99,403.81 434.47,394.1 425,377.2 425,361 425,361 425,361 425,224 425,208.93 415.3,199.08 401.94,192.65"];
	docm_vcf -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 7 136.31 403.79 142.45 396.26 152.38 385.21 163 378 165.72 376.15 168.67 374.45 171.7 372.89 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 172.64 375.16 177.94 369.97 170.56 370.72 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 182.5 380.6 0 39 8 -docm_vcf ",
		label=docm_vcf,
		lp="182.5,382.5",
		pos="e,179.31,369.33 136.31,403.79 142.45,396.26 152.38,385.21 163,378 165.72,376.15 168.67,374.45 171.7,372.89"];
	interval_list -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 4 203.17 403.58 203.3 396.52 203.51 386.24 203.68 377.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 206.12 377.82 203.81 370.78 201.22 377.73 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 226.5 380.6 0 47 13 -interval_list ",
		label=interval_list,
		lp="226.5,382.5",
		pos="e,203.84,369.26 203.17,403.58 203.3,396.52 203.51,386.24 203.68,377.55"];
	tumor_bam -> docm_filter	[_draw_="c 7 -#000000 B 13 347.74 403.7 347.44 393.6 347 376.05 347 361 347 361 347 361 347 224 347 212.03 345.66 208.54 340 198 339.64 197.33 \
339.25 196.67 338.84 196.01 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 340.9 194.68 334.7 190.61 337.01 197.66 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 370 290.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="370,292.5",
		pos="e,333.78,189.41 347.74,403.7 347.44,393.6 347,376.05 347,361 347,361 347,361 347,224 347,212.03 345.66,208.54 340,198 339.64,197.33 \
339.25,196.67 338.84,196.01"];
	tumor_bam -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 7 339.05 403.59 330.12 395.69 315.66 384.19 301 378 295.13 375.52 288.92 373.4 282.58 371.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 283.36 369.26 275.97 369.85 282.11 374 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 325.5 380.6 0 19 3 -bam ",
		label=bam,
		lp="325.5,382.5",
		pos="e,274.5,369.46 339.05,403.59 330.12,395.69 315.66,384.19 301,378 295.13,375.52 288.92,373.4 282.58,371.59"];
	reference -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 7 271.73 403.62 267.44 395.97 260.15 384.84 251 378 248.42 376.07 245.59 374.34 242.65 372.79 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 243.92 370.68 236.54 369.96 241.86 375.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 280 380.6 0 40 9 -reference ",
		label=reference,
		lp="280,382.5",
		pos="e,235.17,369.32 271.73,403.62 267.44,395.97 260.15,384.84 251,378 248.42,376.07 245.59,374.34 242.65,372.79"];
	bgzip2	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 292.5 125.5 292.5 144.5 357.5 144.5 357.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 325 132.5 0 49 9 -bgzip VCF ",
		height=0.27778,
		label="bgzip VCF",
		pos="325,135",
		rects="292.5,125.5,357.5,144.5",
		width=0.90278];
	index2	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 294 80.5 294 99.5 356 99.5 356 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 325 87.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="325,90",
		rects="294,80.5,356,99.5",
		width=0.86111];
	bgzip2 -> index2	[_draw_="c 7 -#000000 B 4 325 125.71 325 120.59 325 113.85 325 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 327.45 107.78 325 100.78 322.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 331.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="331.5,112.5",
		pos="e,325,99.265 325,125.71 325,120.59 325,113.85 325,107.67"];
	docm_filter -> bgzip2	[_draw_="c 7 -#000000 B 4 325 170.71 325 165.59 325 158.85 325 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 327.45 152.78 325 145.78 322.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 331.5 155.6 0 13 4 -file ",
		label=file,
		lp="331.5,157.5",
		pos="e,325,144.27 325,170.71 325,165.59 325,158.85 325,152.67"];
	bgzip	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 199.5 305.5 199.5 324.5 264.5 324.5 264.5 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 232 312.5 0 49 9 -bgzip VCF ",
		height=0.27778,
		label="bgzip VCF",
		pos="232,315",
		rects="199.5,305.5,264.5,324.5",
		width=0.90278];
	GATK_haplotype_caller -> bgzip	[_draw_="c 7 -#000000 B 4 209.4 350.71 212.96 345.24 217.74 337.9 221.98 331.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 224.03 332.74 225.79 325.53 219.92 330.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 226.5 335.6 0 13 4 -file ",
		label=file,
		lp="226.5,337.5",
		pos="e,226.62,324.27 209.4,350.71 212.96,345.24 217.74,337.9 221.98,331.38"];
	index2 -> docm_variants_vcf	[_draw_="c 7 -#000000 B 4 325 80.71 325 75.59 325 68.85 325 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 327.45 62.78 325 55.78 322.55 62.78 ",
		pos="e,325,54.265 325,80.709 325,75.593 325,68.848 325,62.666"];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 209 260.5 209 279.5 271 279.5 271 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 240 267.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="240,270",
		rects="209,260.5,271,279.5",
		width=0.86111];
	bgzip -> index	[_draw_="c 7 -#000000 B 4 233.54 305.71 234.52 300.47 235.81 293.53 236.98 287.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 239.31 288.08 238.19 280.75 234.5 287.19 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 242.5 290.6 0 13 3 -vcf ",
		label=vcf,
		lp="242.5,292.5",
		pos="e,238.46,279.27 233.54,305.71 234.52,300.47 235.81,293.53 236.98,287.24"];
	decompose	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 204 215.5 204 234.5 308 234.5 308 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 256 222.5 0 88 16 -run vt decompose ",
		height=0.27778,
		label="run vt decompose",
		pos="256,225",
		rects="204,215.5,308,234.5",
		width=1.4444];
	decompose -> docm_filter	[_draw_="c 7 -#000000 B 7 256.52 215.66 257.31 209.96 259.26 202.61 264 198 265.7 196.35 267.54 194.85 269.5 193.5 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 270.38 195.82 275.21 190.19 267.92 191.58 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 303.5 200.6 0 79 17 -docm_raw_variants ",
		label=docm_raw_variants,
		lp="303.5,202.5",
		pos="e,276.52,189.43 256.52,215.66 257.31,209.96 259.26,202.61 264,198 265.7,196.35 267.54,194.85 269.5,193.5"];
	index -> decompose	[_draw_="c 7 -#000000 B 4 243.08 260.71 245.03 255.47 247.62 248.53 249.96 242.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 252.25 243.1 252.4 235.68 247.66 241.39 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 255.5 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="255.5,247.5",
		pos="e,252.92,234.27 243.08,260.71 245.03,255.47 247.62,248.53 249.96,242.24"];
}