digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 233 837 233 837 0 ",
		bb="0,0,837,233",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 30 170 30 225 724 225 724 170 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 80 213 0 84 15 -Workflow Inputs ",
			bb="30,170,724,225",
			label="Workflow Inputs",
			lheight=0.15,
			lp="80,215.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 465 178.5 465 197.5 539 197.5 539 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 502 185.5 0 58 12 -scatter_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=scatter_plot,
			pos="502,188",
			rects="465,178.5,539,197.5",
			width=1.0278];
		male_reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 142.5 178.5 142.5 197.5 235.5 197.5 235.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 189 185.5 0 77 14 -male_reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=male_reference,
			pos="189,188",
			rects="142.5,178.5,235.5,197.5",
			width=1.2917];
		drop_low_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 543.5 178.5 543.5 197.5 654.5 197.5 654.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 599 185.5 0 95 17 -drop_low_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=drop_low_coverage,
			pos="599,188",
			rects="543.5,178.5,654.5,197.5",
			width=1.5417];
		cnvkit_vcf_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 38 178.5 38 197.5 138 197.5 138 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 88 185.5 0 84 15 -cnvkit_vcf_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cnvkit_vcf_name,
			pos="88,188",
			rects="38,178.5,138,197.5",
			width=1.3889];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 239.5 178.5 239.5 197.5 312.5 197.5 312.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 276 185.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="276,188",
			rects="239.5,178.5,312.5,197.5",
			width=1.0139];
		diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 658.5 178.5 658.5 197.5 715.5 197.5 715.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 687 185.5 0 41 7 -diagram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=diagram,
			pos="687,188",
			rects="658.5,178.5,715.5,197.5",
			width=0.79167];
		method	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 317 178.5 317 197.5 371 197.5 371 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 344 185.5 0 38 6 -method ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=method,
			pos="344,188",
			rects="317,178.5,371,197.5",
			width=0.75];
		reference_cnn	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 375 178.5 375 197.5 461 197.5 461 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 418 185.5 0 70 13 -reference_cnn ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_cnn,
			pos="418,188",
			rects="375,178.5,461,197.5",
			width=1.1944];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 8 8 63 829 63 829 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 62 15 0 92 16 -Workflow Outputs ",
			bb="8,8,829,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="62,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		tumor_segmented_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 317.5 35.5 317.5 54.5 456.5 54.5 456.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 387 42.5 0 123 22 -tumor_segmented_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_segmented_ratios,
			pos="387,45",
			rects="317.5,35.5,456.5,54.5",
			width=1.9306];
		tumor_bin_level_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 461 35.5 461 54.5 589 54.5 589 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 525 42.5 0 112 22 -tumor_bin_level_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bin_level_ratios,
			pos="525,45",
			rects="461,35.5,589,54.5",
			width=1.7778];
		tumor_antitarget_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 593.5 35.5 593.5 54.5 742.5 54.5 742.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 668 42.5 0 133 25 -tumor_antitarget_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_antitarget_coverage,
			pos="668,45",
			rects="593.5,35.5,742.5,54.5",
			width=2.0694];
		cn_diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 747 35.5 747 54.5 821 54.5 821 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 784 42.5 0 58 10 -cn_diagram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_diagram,
			pos="784,45",
			rects="747,35.5,821,54.5",
			width=1.0278];
		cnvkit_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 35.5 16.5 54.5 83.5 54.5 83.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 50 42.5 0 51 10 -cnvkit_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cnvkit_vcf,
			pos="50,45",
			rects="16.5,35.5,83.5,54.5",
			width=0.93056];
		cn_scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 87.5 35.5 87.5 54.5 178.5 54.5 178.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 133 42.5 0 75 15 -cn_scatter_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_scatter_plot,
			pos="133,45",
			rects="87.5,35.5,178.5,54.5",
			width=1.2639];
		tumor_target_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 182.5 35.5 182.5 54.5 313.5 54.5 313.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 248 42.5 0 115 21 -tumor_target_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_target_coverage,
			pos="248,45",
			rects="182.5,35.5,313.5,54.5",
			width=1.8194];
	}
	cnvkit_main	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 348.5 125.5 348.5 144.5 425.5 144.5 425.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 387 132.5 0 61 11 -cnvkit_main ",
		height=0.27778,
		label=cnvkit_main,
		pos="387,135",
		rects="348.5,125.5,425.5,144.5",
		width=1.0694];
	scatter_plot -> cnvkit_main	[_draw_="c 7 -#000000 B 7 494.56 178.7 487.1 170.88 474.88 159.44 462 153 453.14 148.57 443.11 145.28 433.34 142.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 434.07 140.49 426.7 141.32 432.97 145.27 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 499.5 155.6 0 49 12 -scatter_plot ",
		label=scatter_plot,
		lp="499.5,157.5",
		pos="e,425.22,140.98 494.56,178.7 487.1,170.88 474.88,159.44 462,153 453.14,148.57 443.11,145.28 433.34,142.84"];
	male_reference -> cnvkit_main	[_draw_="c 7 -#000000 B 10 196.86 178.62 205.03 170.51 218.62 158.64 233 153 269.97 138.5 282.54 149.5 322 145 327.91 144.33 334.12 143.55 \
340.26 142.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 340.43 145.19 347.04 141.84 339.78 140.34 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 265 155.6 0 64 14 -male_reference ",
		label=male_reference,
		lp="265,157.5",
		pos="e,348.54,141.64 196.86,178.62 205.03,170.51 218.62,158.64 233,153 269.97,138.5 282.54,149.5 322,145 327.91,144.33 334.12,143.55 \
340.26,142.75"];
	cns_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 50.5 80.5 50.5 99.5 345.5 99.5 345.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 198 87.5 0 279 57 -Convert default cnvkit .cns output to standard vcf format ",
		height=0.27778,
		label="Convert default cnvkit .cns output to standard vcf format",
		pos="198,90",
		rects="50.5,80.5,345.5,99.5",
		width=4.0972];
	male_reference -> cns_to_vcf	[_draw_="c 7 -#000000 B 4 189.77 178.82 191.24 163.09 194.49 128.4 196.44 107.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 198.85 108.14 197.07 100.94 193.97 107.69 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 227 133.1 0 64 14 -male_reference ",
		label=male_reference,
		lp="227,135",
		pos="e,197.21,99.438 189.77,178.82 191.24,163.09 194.49,128.4 196.44,107.63"];
	drop_low_coverage -> cnvkit_main	[_draw_="c 7 -#000000 B 7 584.22 178.55 569.64 170.62 546.49 159.1 525 153 495.22 144.55 460.65 140.3 433.56 138.16 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 434.07 135.74 426.91 137.67 433.72 140.63 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 587.5 155.6 0 79 17 -drop_low_coverage ",
		label=drop_low_coverage,
		lp="587.5,157.5",
		pos="e,425.4,137.56 584.22,178.55 569.64,170.62 546.49,159.1 525,153 495.22,144.55 460.65,140.3 433.56,138.16"];
	cnvkit_vcf_name -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 93.31 178.54 101.64 165.75 118.81 141.29 138 125 148.09 116.44 160.64 108.93 171.66 103.17 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 172.5 105.49 177.64 100.14 170.29 101.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 165.5 133.1 0 55 11 -output_name ",
		label=output_name,
		lp="165.5,135",
		pos="e,178.99,99.462 93.309,178.54 101.64,165.75 118.81,141.29 138,125 148.09,116.44 160.64,108.93 171.66,103.17"];
	tumor_bam -> cnvkit_main	[_draw_="c 7 -#000000 B 7 282.05 178.65 288.19 170.8 298.43 159.34 310 153 319.28 147.91 329.98 144.35 340.4 141.85 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 340.85 144.26 347.18 140.38 339.82 139.47 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 333 155.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="333,157.5",
		pos="e,348.66,140.07 282.05,178.65 288.19,170.8 298.43,159.34 310,153 319.28,147.91 329.98,144.35 340.4,141.85"];
	tumor_bam -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 275.94 178.84 275.44 166.02 272.76 140.98 260 125 252.42 115.5 241.43 108.27 230.81 102.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 231.94 100.79 224.56 100.08 229.88 105.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 293 133.1 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="293,135",
		pos="e,223.19,99.44 275.94,178.84 275.44,166.02 272.76,140.98 260,125 252.42,115.5 241.43,108.27 230.81,102.97"];
	diagram -> cnvkit_main	[_draw_="c 7 -#000000 B 7 675.96 178.57 664.61 170.43 646.09 158.53 628 153 592.92 142.28 493.29 138.27 433.68 136.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 433.75 134.36 426.7 136.65 433.64 139.26 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 665 155.6 0 34 7 -diagram ",
		label=diagram,
		lp="665,157.5",
		pos="e,425.18,136.61 675.96,178.57 664.61,170.43 646.09,158.53 628,153 592.92,142.28 493.29,138.27 433.68,136.81"];
	method -> cnvkit_main	[_draw_="c 7 -#000000 B 7 347.77 178.56 351.29 171.27 357.03 160.74 364 153 365.1 151.78 366.29 150.6 367.54 149.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 369 151.43 372.89 145.11 365.91 147.62 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 380 155.6 0 32 6 -method ",
		label=method,
		lp="380,157.5",
		pos="e,374.06,144.16 347.77,178.56 351.29,171.27 357.03,160.74 364,153 365.1,151.78 366.29,150.6 367.54,149.45"];
	reference_cnn -> cnvkit_main	[_draw_="c 7 -#000000 B 4 412.88 178.58 408.41 171.23 401.81 160.37 396.4 151.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 398.54 150.27 392.81 145.56 394.35 152.81 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 431.5 155.6 0 59 13 -reference_cnn ",
		label=reference_cnn,
		lp="431.5,157.5",
		pos="e,392.02,144.26 412.88,178.58 408.41,171.23 401.81,160.37 396.4,151.46"];
	cnvkit_main -> tumor_segmented_ratios	[_draw_="c 7 -#000000 B 4 387 125.56 387 111.14 387 81.48 387 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 389.45 62.8 387 55.8 384.55 62.8 ",
		pos="e,387,54.284 387,125.56 387,111.14 387,81.476 387,62.727"];
	cnvkit_main -> tumor_bin_level_ratios	[_draw_="c 7 -#000000 B 4 400.23 125.56 424.51 110.08 476.29 77.06 504.92 58.8 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 506.15 60.93 510.73 55.1 503.51 56.8 ",
		pos="e,512.01,54.284 400.23,125.56 424.51,110.08 476.29,77.061 504.92,58.802"];
	cnvkit_main -> tumor_antitarget_coverage	[_draw_="c 7 -#000000 B 4 413.94 125.56 465.14 109.53 576.4 74.68 633.17 56.91 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 633.75 59.29 639.69 54.86 632.28 54.62 ",
		pos="e,641.14,54.412 413.94,125.56 465.14,109.53 576.4,74.685 633.17,56.907"];
	cnvkit_main -> cn_diagram	[_draw_="c 7 -#000000 B 7 425.28 128.89 491.15 119.53 629.78 97.4 743 63 748.03 61.47 753.3 59.55 758.31 57.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 758.99 59.92 764.51 54.98 757.11 55.4 ",
		pos="e,765.91,54.399 425.28,128.89 491.15,119.53 629.78,97.397 743,63 748.03,61.471 753.3,59.549 758.31,57.552"];
	cnvkit_main -> cn_scatter_plot	[_draw_="c 7 -#000000 B 10 383.68 125.71 378.25 113.38 366.23 90.53 348 80 315.89 61.46 218.2 71.02 182 63 175.18 61.49 167.98 59.33 161.28 \
57.06 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 162.52 54.9 155.1 54.87 160.88 59.52 ",
		pos="e,153.68,54.367 383.68,125.71 378.25,113.38 366.23,90.525 348,80 315.89,61.456 218.2,71.02 182,63 175.18,61.488 167.98,59.33 161.28,\
57.057"];
	cnvkit_main -> tumor_target_coverage	[_draw_="c 7 -#000000 B 10 385.72 125.51 383.22 110.05 377.18 78.23 369 71 360.41 63.4 329.25 65.24 318 63 308.42 61.09 298.17 58.76 288.55 \
56.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 289.14 54.07 281.76 54.79 287.98 58.83 ",
		pos="e,280.29,54.432 385.72,125.51 383.22,110.05 377.18,78.234 369,71 360.41,63.401 329.25,65.244 318,63 308.42,61.089 298.17,58.761 \
288.55,56.449"];
	cnvkit_main -> cns_to_vcf	[_draw_="c 7 -#000000 B 10 348.96 129.1 326.83 125.89 301.33 121.48 291 117 284.88 114.35 285.07 110.75 279 108 273.69 105.6 268.03 103.53 \
262.26 101.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 263.22 99.47 255.81 99.91 261.87 104.18 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 306 110.6 0 30 8 -cnr_file ",
		label=cnr_file,
		lp="306,112.5",
		pos="e,254.36,99.495 348.96,129.1 326.83,125.89 301.33,121.48 291,117 284.88,114.35 285.07,110.75 279,108 273.69,105.6 268.03,103.53 \
262.26,101.75"];
	cnvkit_main -> cns_to_vcf	[_draw_="c 7 -#000000 B 10 351.58 125.56 344.26 123.23 336.73 120.39 330 117 324.05 114 324.16 110.55 318 108 312.05 105.54 305.81 103.43 \
299.44 101.61 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 300.16 99.27 292.76 99.85 298.91 104 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 345.5 110.6 0 31 8 -cns_file ",
		label=cns_file,
		lp="345.5,112.5",
		pos="e,291.3,99.464 351.58,125.56 344.26,123.23 336.73,120.39 330,117 324.05,114 324.16,110.55 318,108 312.05,105.54 305.81,103.43 299.44,\
101.61"];
	cns_to_vcf -> cnvkit_vcf	[_draw_="c 7 -#000000 B 7 152.59 80.52 132.26 76.17 108.16 70.26 87 63 82.65 61.51 78.13 59.68 73.8 57.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 75.05 55.66 67.66 54.97 73.01 60.11 ",
		pos="e,66.287,54.34 152.59,80.517 132.26,76.172 108.16,70.256 87,63 82.654,61.509 78.129,59.68 73.797,57.779"];
}