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			fillcolor="#94DDF4",
			height=0.27778,
			label=phased_proximal_variants_vcf,
			pos="2310,376",
			rects="2227,366.5,2393,385.5",
			width=2.3056];
		n_threads	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2397.5 366.5 2397.5 385.5 2462.5 385.5 2462.5 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2430 373.5 0 49 9 -n_threads ",
			fillcolor="#94DDF4",
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			label=n_threads,
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			rects="2397.5,366.5,2462.5,385.5",
			width=0.90278];
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			fillcolor="#94DDF4",
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			label=fasta_size,
			pos="2500,376",
			rects="2467,366.5,2533,385.5",
			width=0.91667];
		tdna_cov	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2537.5 366.5 2537.5 385.5 2598.5 385.5 2598.5 366.5 ",
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			fillcolor="#94DDF4",
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			label=tdna_cov,
			pos="2568,376",
			rects="2537.5,366.5,2598.5,385.5",
			width=0.84722];
		binding_threshold	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 92 366.5 92 385.5 196 385.5 196 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 144 373.5 0 88 17 -binding_threshold ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=binding_threshold,
			pos="144,376",
			rects="92,366.5,196,385.5",
			width=1.4444];
		epitope_lengths	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 200.5 366.5 200.5 385.5 295.5 385.5 295.5 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 248 373.5 0 79 15 -epitope_lengths ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=epitope_lengths,
			pos="248,376",
			rects="200.5,366.5,295.5,385.5",
			width=1.3194];
	}
	pvacseq	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1623 88.5 1623 107.5 1701 107.5 1701 88.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1662 95.5 0 62 11 -run pVACseq ",
		height=0.27778,
		label="run pVACseq",
		pos="1662,98",
		rects="1623,88.5,1701,107.5",
		width=1.0833];
	additional_report_columns -> pvacseq	[_draw_="c 7 -#000000 B 13 381.23 366.79 389.81 357.33 402 340.91 402 324 402 324 402 324 402 142 402 73.46 485.76 122.32 554 116 764.61 \
96.49 1430.85 97.95 1614.64 98.75 ",
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		label=additional_report_columns,
		lp="456.5,233",
		pos="e,1623,98.792 381.23,366.79 389.81,357.33 402,340.91 402,324 402,324 402,324 402,142 402,73.463 485.76,122.32 554,116 764.61,96.489 \
1430.9,97.953 1614.6,98.755"];
	trna_vaf -> pvacseq	[_draw_="c 7 -#000000 B 13 495.7 366.64 516.12 355.86 548 336.96 548 324 548 324 548 324 548 142 548 111.71 581.34 122.13 611 116 709.84 \
95.57 1422.71 97.76 1614.56 98.73 ",
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		label=trna_vaf,
		lp="565,233",
		pos="e,1623,98.769 495.7,366.64 516.12,355.86 548,336.96 548,324 548,324 548,324 548,142 548,111.71 581.34,122.13 611,116 709.84,95.574 \
1422.7,97.756 1614.6,98.725"];
	normal_cov -> pvacseq	[_draw_="c 7 -#000000 B 13 568.9 366.65 585 358.41 605 344.12 605 324 605 324 605 324 605 142 605 111.3 638.92 122.14 669 116 762.02 97 1430.03 \
98.11 1614.76 98.79 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1614.67 101.24 1621.68 98.82 1614.69 96.34 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 628.5 231.1 0 47 10 -normal_cov ",
		label=normal_cov,
		lp="628.5,233",
		pos="e,1623.2,98.822 568.9,366.65 585,358.41 605,344.12 605,324 605,324 605,324 605,142 605,111.3 638.92,122.14 669,116 762.02,96.999 \
1430,98.11 1614.8,98.79"];
	tumor_rna_bam_readcount	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 3205 313.5 3205 332.5 3345 332.5 3345 313.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3275 320.5 0 124 22 -bam_readcount workflow ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="bam_readcount workflow",
		pos="3275,323",
		rects="3205,313.5,3345,332.5",
		width=1.9444];
	reference_fasta -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 7 3870.42 366.61 3861.52 363.35 3850.9 359.94 3841 358 3749.87 340.11 3485.63 330.12 3352.94 326.11 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3816.5 343.6 0 65 15 -reference_fasta ",
		label=reference_fasta,
		lp="3816.5,345.5",
		pos="e,3344.8,325.86 3870.4,366.61 3861.5,363.35 3850.9,359.94 3841,358 3749.9,340.11 3485.6,330.12 3352.9,326.11"];
	variants_to_table	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 3945.5 88.5 3945.5 107.5 4086.5 107.5 4086.5 88.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4016 95.5 0 125 25 -SelectVariants (GATK 3.6) ",
		height=0.27778,
		label="SelectVariants (GATK 3.6)",
		pos="4016,98",
		rects="3945.5,88.5,4086.5,107.5",
		width=1.9583];
	reference_fasta -> variants_to_table	[_draw_="c 7 -#000000 B 10 3891 366.7 3891 356.6 3891 339.05 3891 324 3891 324 3891 324 3891 142 3891 127.08 3923.23 116.23 3954.95 109.16 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3911 231.1 0 40 9 -reference ",
		label=reference,
		lp="3911,233",
		pos="e,3963,107.44 3891,366.7 3891,356.6 3891,339.05 3891,324 3891,324 3891,324 3891,142 3891,127.08 3923.2,116.23 3955,109.16"];
	add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2952.5 178.5 2952.5 197.5 3095.5 197.5 3095.5 178.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3024 185.5 0 127 26 -add expression info to vcf ",
		height=0.27778,
		label="add expression info to vcf",
		pos="3024,188",
		rects="2952.5,178.5,3095.5,197.5",
		width=1.9861];
	transcript_expression_file -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 13 3720.04 366.54 3709.77 362.86 3699.73 357.58 3692 350 3683.27 341.44 3683 336.23 3683 324 3683 324 3683 324 3683 \
232 3683 203.29 3279.39 193.18 3103.9 190.14 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3104.02 187.69 3096.98 190.02 3103.94 192.59 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3713.5 276.1 0 61 15 -expression_file ",
		label=expression_file,
		lp="3713.5,278",
		pos="e,3095.5,190 3720,366.54 3709.8,362.86 3699.7,357.58 3692,350 3683.3,341.44 3683,336.23 3683,324 3683,324 3683,324 3683,232 3683,\
203.29 3279.4,193.18 3103.9,190.14"];
	add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2952.5 223.5 2952.5 242.5 3095.5 242.5 3095.5 223.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3024 230.5 0 127 26 -add expression info to vcf ",
		height=0.27778,
		label="add expression info to vcf",
		pos="3024,233",
		rects="2952.5,223.5,3095.5,242.5",
		width=1.9861];
	expression_tool -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 7 2837.58 366.51 2839.08 350.72 2844.4 316.56 2863 296 2888.02 268.34 2926.79 252.92 2960.01 244.38 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2895 298.6 0 64 15 -expression_tool ",
		label=expression_tool,
		lp="2895,300.5",
		pos="e,2967.9,242.45 2837.6,366.51 2839.1,350.72 2844.4,316.56 2863,296 2888,268.34 2926.8,252.92 2960,244.38"];
	expression_tool -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 10 2814.29 366.66 2796.94 358.66 2776 344.71 2776 324 2776 324 2776 324 2776 232 2776 214.62 2871.81 202.23 2944.33 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2944.35 197.8 2951.09 194.71 2943.9 192.93 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2808 276.1 0 64 15 -expression_tool ",
		label=expression_tool,
		lp="2808,278",
		pos="e,2952.6,194.57 2814.3,366.66 2796.9,358.66 2776,344.71 2776,324 2776,324 2776,324 2776,232 2776,214.62 2871.8,202.23 2944.3,195.35"];
	minimum_fold_change -> pvacseq	[_draw_="c 7 -#000000 B 13 657.55 366.51 661.4 356.52 667 339.35 667 324 667 324 667 324 667 142 667 84.38 736.74 122.37 794 116 955.15 98.08 \
1458.52 98.27 1615.06 98.79 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1614.6 101.24 1621.61 98.81 1614.62 96.34 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 713 231.1 0 92 19 -minimum_fold_change ",
		label=minimum_fold_change,
		lp="713,233",
		pos="e,1623.1,98.819 657.55,366.51 661.4,356.52 667,339.35 667,324 667,324 667,324 667,142 667,84.385 736.74,122.37 794,116 955.15,98.078 \
1458.5,98.273 1615.1,98.791"];
	expn_val -> pvacseq	[_draw_="c 7 -#000000 B 13 764.91 366.72 776.38 357.68 792 342.06 792 324 792 324 792 324 792 142 792 87.43 857.81 122.43 912 116 1048.95 \
99.76 1472.59 98.76 1614.86 98.89 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1614.5 101.34 1621.51 98.9 1614.51 96.44 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 810 231.1 0 36 8 -expn_val ",
		label=expn_val,
		lp="810,233",
		pos="e,1623,98.902 764.91,366.72 776.38,357.68 792,342.06 792,324 792,324 792,324 792,142 792,87.429 857.81,122.43 912,116 1049,99.762 \
1472.6,98.756 1614.9,98.893"];
	sample_name -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 10 2933.1 366.96 2937.56 351.32 2949.39 316.55 2971 296 2977.34 289.97 2982.34 293.69 2989 288 3001.29 277.51 3010.86 \
261.63 3016.87 249.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3018.95 251.12 3019.79 243.75 3014.54 248.99 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3000 298.6 0 58 11 -sample_name ",
		label=sample_name,
		lp="3000,300.5",
		pos="e,3020.4,242.39 2933.1,366.96 2937.6,351.32 2949.4,316.55 2971,296 2977.3,289.97 2982.3,293.69 2989,288 3001.3,277.51 3010.9,261.63 \
3016.9,249.81"];
	sample_name -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 7 2950.81 366.66 2959.08 363.49 2968.87 360.13 2978 358 3072.04 336.02 3099.86 344 3196.8 333.34 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3196.95 335.79 3203.63 332.57 3196.4 330.92 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3107.5 343.6 0 31 6 -sample ",
		label=sample,
		lp="3107.5,345.5",
		pos="e,3205.1,332.4 2950.8,366.66 2959.1,363.49 2968.9,360.13 2978,358 3072,336.02 3099.9,344 3196.8,333.34"];
	sample_name -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 10 2931 366.7 2931 356.6 2931 339.05 2931 324 2931 324 2931 324 2931 232 2931 216.7 2941.5 206.83 2955.44 200.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2956.01 202.87 2961.6 198 2954.19 198.32 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2960 276.1 0 58 11 -sample_name ",
		label=sample_name,
		lp="2960,278",
		pos="e,2963,197.44 2931,366.7 2931,356.6 2931,339.05 2931,324 2931,324 2931,324 2931,232 2931,216.7 2941.5,206.83 2955.4,200.46"];
	sample_name -> pvacseq	[_draw_="c 7 -#000000 B 10 2908.93 366.51 2884.04 356.23 2847 338.5 2847 324 2847 324 2847 324 2847 142 2847 113.02 1929.65 101.75 1709.21 \
99.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1709.29 97.01 1702.27 99.39 1709.24 101.91 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2876 231.1 0 58 11 -sample_name ",
		label=sample_name,
		lp="2876,233",
		pos="e,1700.8,99.371 2908.9,366.51 2884,356.23 2847,338.5 2847,324 2847,324 2847,324 2847,142 2847,113.02 1929.7,101.75 1709.2,99.458"];
	add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 3044 268.5 3044 287.5 3288 287.5 3288 268.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3166 275.5 0 228 46 -Add snv and indel bam-readcount files to a vcf ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="Add snv and indel bam-readcount files to a vcf",
		pos="3166,278",
		rects="3044,268.5,3288,287.5",
		width=3.3889];
	sample_name -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 13 2947.85 366.64 2965.03 358.55 2992.68 346.69 3018 341 3042.99 335.38 3111.16 346.39 3133 333 3141.84 327.58 3139.61 \
321.85 3145 313 3148.67 306.97 3152.74 300.36 3156.31 294.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3158.39 295.89 3159.99 288.65 3154.22 293.31 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3174 321.1 0 58 11 -sample_name ",
		label=sample_name,
		lp="3174,323",
		pos="e,3160.8,287.37 2947.8,366.64 2965,358.55 2992.7,346.69 3018,341 3043,335.38 3111.2,346.39 3133,333 3141.8,327.58 3139.6,321.85 \
3145,313 3148.7,306.97 3152.7,300.36 3156.3,294.59"];
	prediction_algorithms -> pvacseq	[_draw_="c 7 -#000000 B 10 851.36 366.78 854.03 356.76 858 339.28 858 324 858 324 858 324 858 142 858 103.85 1442.71 99.5 1614.86 99.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1614.71 101.49 1621.71 99.02 1614.7 96.59 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 902.5 231.1 0 89 21 -prediction_algorithms ",
		label=prediction_algorithms,
		lp="902.5,233",
		pos="e,1623.2,99.021 851.36,366.78 854.03,356.76 858,339.28 858,324 858,324 858,324 858,142 858,103.85 1442.7,99.497 1614.9,99.041"];
	top_score_metric -> pvacseq	[_draw_="c 7 -#000000 B 13 978.29 366.61 990.59 357.69 1007 342.35 1007 324 1007 324 1007 324 1007 142 1007 86.56 1073.96 122.69 1129 116 \
1222.27 104.67 1502.67 100.62 1614.86 99.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1614.79 101.88 1621.76 99.36 1614.74 96.98 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1042 231.1 0 70 16 -top_score_metric ",
		label=top_score_metric,
		lp="1042,233",
		pos="e,1623.3,99.34 978.29,366.61 990.59,357.69 1007,342.35 1007,324 1007,324 1007,324 1007,142 1007,86.56 1074,122.69 1129,116 1222.3,\
104.67 1502.7,100.62 1614.9,99.427"];
	add_vep_fields_to_table	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 3818.5 35.5 3818.5 54.5 3975.5 54.5 3975.5 35.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3897 42.5 0 141 28 -add VEP annotation to report ",
		height=0.27778,
		label="add VEP annotation to report",
		pos="3897,45",
		rects="3818.5,35.5,3975.5,54.5",
		width=2.1806];
	vep_to_table_fields -> add_vep_fields_to_table	[_draw_="c 7 -#000000 B 10 3975.37 366.62 3958.53 358.51 3938 344.44 3938 324 3938 324 3938 324 3938 97 3938 81.95 3927.02 68.81 3916.42 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3918.14 57.89 3911.15 55.42 3915.08 61.71 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3959 208.6 0 42 10 -vep_fields ",
		label=vep_fields,
		lp="3959,210.5",
		pos="e,3910,54.468 3975.4,366.62 3958.5,358.51 3938,344.44 3938,324 3938,324 3938,324 3938,97 3938,81.947 3927,68.814 3916.4,59.646"];
	gene_expression_file -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 4 3037.17 366.6 3034.9 343.82 3028.62 280.55 3025.63 250.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3028.09 250.41 3024.96 243.68 3023.22 250.89 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3061.5 298.6 0 61 15 -expression_file ",
		label=expression_file,
		lp="3061.5,300.5",
		pos="e,3024.8,242.18 3037.2,366.6 3034.9,343.82 3028.6,280.55 3025.6,250.39"];
	net_chop_threshold -> pvacseq	[_draw_="c 7 -#000000 B 13 1093.9 366.6 1108.94 358.16 1128 343.6 1128 324 1128 324 1128 324 1128 142 1128 73.03 1212.42 123.33 1281 116 \
1400.73 103.21 1542.62 100.01 1614.77 99.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1614.72 101.68 1621.7 99.16 1614.67 96.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1168.5 231.1 0 81 18 -net_chop_threshold ",
		label=net_chop_threshold,
		lp="1168.5,233",
		pos="e,1623.2,99.149 1093.9,366.6 1108.9,358.16 1128,343.6 1128,324 1128,324 1128,324 1128,142 1128,73.025 1212.4,123.33 1281,116 1400.7,\
103.21 1542.6,100.01 1614.8,99.232"];
	maximum_transcript_support_level -> pvacseq	[_draw_="c 7 -#000000 B 10 1237.81 366.54 1244.91 356.87 1255 340.24 1255 324 1255 324 1255 324 1255 142 1255 106.16 1507.87 100.1 1614.97 \
99.15 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1614.85 101.6 1621.83 99.09 1614.81 96.7 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1326 231.1 0 142 32 -maximum_transcript_support_level ",
		label=maximum_transcript_support_level,
		lp="1326,233",
		pos="e,1623.3,99.079 1237.8,366.54 1244.9,356.87 1255,340.24 1255,324 1255,324 1255,324 1255,142 1255,106.16 1507.9,100.1 1615,99.146"];
	peptide_sequence_length -> pvacseq	[_draw_="c 7 -#000000 B 10 1404.83 366.53 1408.97 356.57 1415 339.43 1415 324 1415 324 1415 324 1415 142 1415 121.95 1542.96 108.49 1614.68 \
102.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1614.85 104.96 1621.63 101.95 1614.45 100.07 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1468 231.1 0 106 23 -peptide_sequence_length ",
		label=peptide_sequence_length,
		lp="1468,233",
		pos="e,1623.1,101.82 1404.8,366.53 1409,356.57 1415,339.43 1415,324 1415,324 1415,324 1415,142 1415,121.95 1543,108.49 1614.7,102.51"];
	detect_variants_vcf -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 7 3410.31 366.57 3394.11 359.1 3369.33 348.27 3347 341 3339.74 338.64 3331.96 336.45 3324.3 334.49 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3324.92 332.12 3317.54 332.82 3323.75 336.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3375.5 343.6 0 13 3 -vcf ",
		label=vcf,
		lp="3375.5,345.5",
		pos="e,3316.1,332.46 3410.3,366.57 3394.1,359.1 3369.3,348.27 3347,341 3339.7,338.64 3332,336.45 3324.3,334.49"];
	variants_to_table_fields -> variants_to_table	[_draw_="c 7 -#000000 B 10 4104.11 366.62 4088.54 358.28 4069 343.86 4069 324 4069 324 4069 324 4069 142 4069 128.36 4058.28 118.29 4046.49 \
111.34 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4047.76 109.24 4040.43 108.12 4045.46 113.57 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4080.5 231.1 0 23 6 -fields ",
		label=fields,
		lp="4080.5,233",
		pos="e,4039.1,107.41 4104.1,366.62 4088.5,358.28 4069,343.86 4069,324 4069,324 4069,324 4069,142 4069,128.36 4058.3,118.29 4046.5,111.34"];
	normal_sample_name -> pvacseq	[_draw_="c 7 -#000000 B 10 1539.58 366.73 1541.35 356.67 1544 339.16 1544 324 1544 324 1544 324 1544 142 1544 126.17 1581.96 114.47 1614.82 \
107.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1615.21 109.72 1621.55 105.88 1614.2 104.92 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1589 231.1 0 90 18 -normal_sample_name ",
		label=normal_sample_name,
		lp="1589,233",
		pos="e,1623,105.57 1539.6,366.73 1541.4,356.67 1544,339.16 1544,324 1544,324 1544,324 1544,142 1544,126.17 1582,114.47 1614.8,107.3"];
	trna_cov -> pvacseq	[_draw_="c 7 -#000000 B 10 1636.89 366.81 1640.15 356.84 1645 339.4 1645 324 1645 324 1645 324 1645 142 1645 132.47 1648.66 122.53 1652.58 \
114.61 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1654.7 115.84 1655.9 108.52 1650.4 113.49 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1662.5 231.1 0 35 8 -trna_cov ",
		label=trna_cov,
		lp="1662.5,233",
		pos="e,1656.6,107.19 1636.9,366.81 1640.1,356.84 1645,339.4 1645,324 1645,324 1645,324 1645,142 1645,132.47 1648.7,122.53 1652.6,114.61"];
	alleles -> pvacseq	[_draw_="c 7 -#000000 B 10 1691.47 366.7 1690.88 356.61 1690 339.06 1690 324 1690 324 1690 324 1690 142 1690 131.14 1683.65 120.88 1677 113.1 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1679.09 111.74 1672.51 108.3 1675.51 115.09 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1704 231.1 0 28 7 -alleles ",
		label=alleles,
		lp="1704,233",
		pos="e,1671.5,107.2 1691.5,366.7 1690.9,356.61 1690,339.06 1690,324 1690,324 1690,324 1690,142 1690,131.14 1683.7,120.88 1677,113.1"];
	downstream_sequence_length -> pvacseq	[_draw_="c 7 -#000000 B 10 1778.82 366.55 1761.06 358.62 1740 344.83 1740 324 1740 324 1740 324 1740 142 1740 124.84 1725.34 114.47 1708.72 \
108.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1709.85 106.03 1702.44 106.14 1708.3 110.68 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1803 231.1 0 126 26 -downstream_sequence_length ",
		label=downstream_sequence_length,
		lp="1803,233",
		pos="e,1701,105.66 1778.8,366.55 1761.1,358.62 1740,344.83 1740,324 1740,324 1740,324 1740,142 1740,124.84 1725.3,114.47 1708.7,108.24"];
	readcount_minimum_mapping_quality -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 7 3539.73 366.53 3497.63 359.6 3436.47 349.58 3383 341 3368.29 338.64 3352.46 336.13 3337.56 333.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3338.19 331.4 3330.89 332.73 3337.43 336.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3477.5 343.6 0 87 19 -min_mapping_quality ",
		label=min_mapping_quality,
		lp="3477.5,345.5",
		pos="e,3329.4,332.5 3539.7,366.53 3497.6,359.6 3436.5,349.58 3383,341 3368.3,338.64 3352.5,336.13 3337.6,333.78"];
	tdna_vaf -> pvacseq	[_draw_="c 7 -#000000 B 10 1911.05 366.74 1902.77 357.23 1891 340.77 1891 324 1891 324 1891 324 1891 142 1891 105.34 1776.21 99.04 1709.17 \
98.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1709.37 96.03 1702.36 98.45 1709.35 100.93 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1909 231.1 0 36 8 -tdna_vaf ",
		label=tdna_vaf,
		lp="1909,233",
		pos="e,1700.8,98.439 1911.1,366.74 1902.8,357.23 1891,340.77 1891,324 1891,324 1891,324 1891,142 1891,105.34 1776.2,99.037 1709.2,98.481"];
	netmhc_stab -> pvacseq	[_draw_="c 7 -#000000 B 10 1984.77 366.79 1976.19 357.33 1964 340.91 1964 324 1964 324 1964 324 1964 142 1964 116.59 1794.29 105.11 1709.31 \
100.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1709.48 98.51 1702.37 100.63 1709.25 103.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1990.5 231.1 0 53 11 -netmhc_stab ",
		label=netmhc_stab,
		lp="1990.5,233",
		pos="e,1700.9,100.56 1984.8,366.79 1976.2,357.33 1964,340.91 1964,324 1964,324 1964,324 1964,142 1964,116.59 1794.3,105.11 1709.3,100.96"];
	rnaseq_bam -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 7 3160.96 366.6 3167.96 363.83 3175.8 360.75 3183 358 3203.27 350.25 3226.17 341.78 3244.05 335.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3244.73 337.6 3250.46 332.9 3243.05 333 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3237.5 343.6 0 19 3 -bam ",
		label=bam,
		lp="3237.5,345.5",
		pos="e,3251.9,332.38 3161,366.6 3168,363.83 3175.8,360.75 3183,358 3203.3,350.25 3226.2,341.78 3244,335.24"];
	normal_vaf -> pvacseq	[_draw_="c 7 -#000000 B 13 62.02 366.74 72.05 357.47 86 341.45 86 324 86 324 86 324 86 142 86 58.97 188.21 122.3 271 116 540.59 95.49 1402.62 \
97.85 1614.58 98.77 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1614.49 101.22 1621.5 98.8 1614.51 96.32 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 109 231.1 0 46 10 -normal_vaf ",
		label=normal_vaf,
		lp="109,233",
		pos="e,1623,98.805 62.017,366.74 72.046,357.47 86,341.45 86,324 86,324 86,324 86,142 86,58.97 188.21,122.3 271,116 540.59,95.492 1402.6,\
97.853 1614.6,98.767"];
	variants_to_table_genotype_fields -> variants_to_table	[_draw_="c 7 -#000000 B 10 4259.13 366.51 4240.49 358.74 4219 345.2 4219 324 4219 324 4219 324 4219 142 4219 115.48 4151.83 105.24 4094.77 \
101.33 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4095.08 98.89 4087.94 100.89 4094.77 103.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4252 231.1 0 66 15 -genotype_fields ",
		label=genotype_fields,
		lp="4252,233",
		pos="e,4086.4,100.79 4259.1,366.51 4240.5,358.74 4219,345.2 4219,324 4219,324 4219,324 4219,142 4219,115.48 4151.8,105.24 4094.8,101.33"];
	exclude_nas -> pvacseq	[_draw_="c 7 -#000000 B 10 2068.62 366.64 2060.93 357.04 2050 340.5 2050 324 2050 324 2050 324 2050 142 2050 108.09 1812.89 100.92 1709.38 \
99.41 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1709.53 96.96 1702.49 99.31 1709.46 101.86 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2075.5 231.1 0 51 11 -exclude_nas ",
		label=exclude_nas,
		lp="2075.5,233",
		pos="e,1701,99.29 2068.6,366.64 2060.9,357.04 2050,340.5 2050,324 2050,324 2050,324 2050,142 2050,108.09 1812.9,100.92 1709.4,99.405"];
	readcount_minimum_base_quality -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 4 3275 366.58 3275 359.52 3275 349.24 3275 340.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3277.45 340.78 3275 333.78 3272.55 340.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3310.5 343.6 0 71 16 -min_base_quality ",
		label=min_base_quality,
		lp="3310.5,345.5",
		pos="e,3275,332.26 3275,366.58 3275,359.52 3275,349.24 3275,340.55"];
	net_chop_method -> pvacseq	[_draw_="c 7 -#000000 B 10 2158.03 366.53 2146.02 357.55 2130 342.18 2130 324 2130 324 2130 324 2130 142 2130 100.02 1827.52 97.75 1708.91 \
98.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1709.19 96.02 1702.21 98.52 1709.23 100.92 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2166.5 231.1 0 73 15 -net_chop_method ",
		label=net_chop_method,
		lp="2166.5,233",
		pos="e,1700.7,98.526 2158,366.53 2146,357.55 2130,342.18 2130,324 2130,324 2130,324 2130,142 2130,100.02 1827.5,97.747 1708.9,98.469"];
	phased_proximal_variants_vcf -> pvacseq	[_draw_="c 7 -#000000 B 13 2265.24 366.51 2243.08 359.45 2221 346.71 2221 324 2221 324 2221 324 2221 142 2221 85.69 2152.89 122.9 2097 116 \
1956.78 98.68 1789.39 97.59 1709.28 98.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1709.36 95.81 1702.39 98.33 1709.41 100.71 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2282 231.1 0 122 28 -phased_proximal_variants_vcf ",
		label=phased_proximal_variants_vcf,
		lp="2282,233",
		pos="e,1700.9,98.343 2265.2,366.51 2243.1,359.45 2221,346.71 2221,324 2221,324 2221,324 2221,142 2221,85.69 2152.9,122.9 2097,116 1956.8,\
98.684 1789.4,97.592 1709.3,98.263"];
	n_threads -> pvacseq	[_draw_="c 7 -#000000 B 10 2413.54 366.61 2393.41 355.79 2362 336.84 2362 324 2362 324 2362 324 2362 142 2362 109.2 1865.88 101.15 1708.97 \
99.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1709.42 96.98 1702.4 99.35 1709.37 101.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2382.5 231.1 0 41 9 -n_threads ",
		label=n_threads,
		lp="2382.5,233",
		pos="e,1700.9,99.338 2413.5,366.61 2393.4,355.79 2362,336.84 2362,324 2362,324 2362,324 2362,142 2362,109.2 1865.9,101.15 1709,99.425"];
	fasta_size -> pvacseq	[_draw_="c 7 -#000000 B 10 2485.27 366.5 2472.14 357.71 2455 342.66 2455 324 2455 324 2455 324 2455 142 2455 104.42 1879.59 99.66 1709.07 \
99.08 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1709.31 96.63 1702.3 99.06 1709.29 101.53 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2476 231.1 0 42 10 -fasta_size ",
		label=fasta_size,
		lp="2476,233",
		pos="e,1700.8,99.051 2485.3,366.5 2472.1,357.71 2455,342.66 2455,324 2455,324 2455,324 2455,142 2455,104.42 1879.6,99.661 1709.1,99.077"];
	tdna_cov -> pvacseq	[_draw_="c 7 -#000000 B 10 2558.87 366.56 2549.72 357.14 2537 340.99 2537 324 2537 324 2537 324 2537 142 2537 100.17 1890.74 98.48 1709.02 \
98.83 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1709.23 96.38 1702.24 98.85 1709.25 101.28 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2555.5 231.1 0 37 8 -tdna_cov ",
		label=tdna_cov,
		lp="2555.5,233",
		pos="e,1700.7,98.849 2558.9,366.56 2549.7,357.14 2537,340.99 2537,324 2537,324 2537,324 2537,142 2537,100.17 1890.7,98.48 1709,98.831"];
	epitope_lengths -> pvacseq	[_draw_="c 7 -#000000 B 13 253.74 366.77 259.96 357.02 269 340.09 269 324 269 324 269 324 269 142 269 81.33 342.65 122.21 403 116 525.04 \
103.44 1401.27 99.83 1615.05 99.14 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1614.76 101.59 1621.75 99.12 1614.74 96.69 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 302.5 231.1 0 67 15 -epitope_lengths ",
		label=epitope_lengths,
		lp="302.5,233",
		pos="e,1623.3,99.112 253.74,366.77 259.96,357.02 269,340.09 269,324 269,324 269,324 269,142 269,81.334 342.65,122.21 403,116 525.04,103.44 \
1401.3,99.835 1615.1,99.138"];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 3587 133.5 3587 152.5 3649 152.5 3649 133.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3618 140.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="3618,143",
		rects="3587,133.5,3649,152.5",
		width=0.86111];
	index -> variants_to_table	[_draw_="c 7 -#000000 B 10 3648.89 141.61 3704.84 140.6 3820.7 137.08 3859 125 3866.41 122.66 3866.64 118.52 3874 116 3894.01 109.15 3916.43 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3937.53 104.91 3944.21 101.71 3936.99 100.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3880.5 118.6 0 13 3 -vcf ",
		label=vcf,
		lp="3880.5,120.5",
		pos="e,3945.7,101.54 3648.9,141.61 3704.8,140.6 3820.7,137.08 3859,125 3866.4,122.66 3866.6,118.52 3874,116 3894,109.15 3916.4,104.98 \
3937.4,102.46"];
	index -> add_vep_fields_to_table	[_draw_="c 7 -#000000 B 4 3642.27 133.65 3692.56 116.34 3808.16 76.57 3864.69 57.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3865.33 59.49 3871.15 54.89 3863.74 54.85 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3777.5 96.1 0 13 3 -vcf ",
		label=vcf,
		lp="3777.5,98",
		pos="e,3872.6,54.4 3642.3,133.65 3692.6,116.34 3808.2,76.568 3864.7,57.118"];
	index -> pvacseq	[_draw_="c 7 -#000000 B 7 3587.32 140.74 3483.72 136.55 3137.37 122.9 2851 116 2406.71 105.29 1868.86 100.57 1708.97 99.34 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1709.28 96.89 1702.27 99.29 1709.25 101.79 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3164.5 118.6 0 37 9 -input_vcf ",
		label=input_vcf,
		lp="3164.5,120.5",
		pos="e,1700.8,99.278 3587.3,140.74 3483.7,136.55 3137.4,122.9 2851,116 2406.7,105.29 1868.9,100.57 1709,99.341"];
	add_gene_expression_data_to_vcf -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 4 3024 223.71 3024 218.59 3024 211.85 3024 205.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3026.45 205.78 3024 198.78 3021.55 205.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3030.5 208.6 0 13 3 -vcf ",
		label=vcf,
		lp="3030.5,210.5",
		pos="e,3024,197.27 3024,223.71 3024,218.59 3024,211.85 3024,205.67"];
	tumor_rna_bam_readcount -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 3206.09 313.52 3189.2 310.85 3175.04 307.85 3172 305 3169.41 302.57 3167.84 299.27 3166.9 295.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3169.33 295.51 3165.89 288.94 3164.48 296.22 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3221 298.6 0 98 21 -snv_bam_readcount_tsv ",
		label=snv_bam_readcount_tsv,
		lp="3221,300.5",
		pos="e,3165.7,287.44 3206.1,313.52 3189.2,310.85 3175,307.85 3172,305 3169.4,302.57 3167.8,299.27 3166.9,295.84"];
	tumor_rna_bam_readcount -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 3274.62 313.51 3273.9 307.72 3271.97 300.36 3267 296 3264.18 293.53 3259.54 291.41 3253.77 289.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3254.76 287.32 3247.36 287.85 3253.47 292.05 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3278.5 298.6 0 13 3 -vcf ",
		label=vcf,
		lp="3278.5,300.5",
		pos="e,3245.9,287.45 3274.6,313.51 3273.9,307.72 3272,300.36 3267,296 3264.2,293.53 3259.5,291.41 3253.8,289.59"];
	tumor_rna_bam_readcount -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 3282.87 313.53 3286.99 308.06 3290.37 301.03 3286 296 3284.2 293.92 3281.51 292.1 3278.15 290.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3279.16 288.25 3271.75 288.02 3277.4 292.82 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3340 298.6 0 104 23 -indel_bam_readcount_tsv ",
		label=indel_bam_readcount_tsv,
		lp="3340,300.5",
		pos="e,3270.3,287.47 3282.9,313.53 3287,308.06 3290.4,301.03 3286,296 3284.2,293.92 3281.5,292.1 3278.1,290.48"];
	variants_to_table -> add_vep_fields_to_table	[_draw_="c 7 -#000000 B 4 3996.35 88.58 3976.71 80.16 3946.36 67.15 3924.37 57.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3925.47 55.54 3918.07 55.03 3923.54 60.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3980.5 73.6 0 13 3 -tsv ",
		label=tsv,
		lp="3980.5,75.5",
		pos="e,3916.7,54.434 3996.3,88.578 3976.7,80.162 3946.4,67.153 3924.4,57.729"];
	add_transcript_expression_data_to_vcf -> annotated_vcf	[_draw_="c 7 -#000000 B 10 3007.27 178.61 2976.91 163.72 2910.38 132.7 2851 116 2707.58 75.67 2664.25 100.28 2520 63 2513.99 61.45 2507.68 \
59.44 2501.69 57.34 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2502.63 55.08 2495.21 54.99 2500.96 59.68 ",
		pos="e,2493.8,54.474 3007.3,178.61 2976.9,163.72 2910.4,132.7 2851,116 2707.6,75.671 2664.2,100.28 2520,63 2514,61.448 2507.7,59.436 \
2501.7,57.343"];
	add_transcript_expression_data_to_vcf -> index	[_draw_="c 7 -#000000 B 4 3095.36 181.83 3221.63 172.69 3480.4 153.96 3578.82 146.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3578.97 149.28 3585.78 146.33 3578.62 144.39 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3380.5 163.6 0 13 3 -vcf ",
		label=vcf,
		lp="3380.5,165.5",
		pos="e,3587.3,146.22 3095.4,181.83 3221.6,172.69 3480.4,153.96 3578.8,146.84"];
	add_vep_fields_to_table -> annotated_tsv;
	pvacseq -> combined_filtered_epitopes	[_draw_="c 7 -#000000 B 4 1687.6 88.58 1713.85 79.94 1754.8 66.47 1783.59 56.99 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1784.05 59.42 1789.93 54.91 1782.51 54.77 ",
		pos="e,1791.4,54.434 1687.6,88.578 1713.8,79.941 1754.8,66.465 1783.6,56.992"];
	pvacseq -> mhc_ii_all_epitopes	[_draw_="c 7 -#000000 B 7 1700.86 92.88 1747.17 87.6 1826.73 77.4 1894 63 1902.18 61.25 1910.88 59.01 1919.06 56.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1919.5 59.15 1925.55 54.87 1918.15 54.44 ",
		pos="e,1927,54.458 1700.9,92.876 1747.2,87.602 1826.7,77.396 1894,63 1902.2,61.25 1910.9,59.008 1919.1,56.731"];
	pvacseq -> mhc_i_filtered_epitopes	[_draw_="c 7 -#000000 B 7 1700.97 95 1765.71 91.28 1899.36 81.9 2011 63 2021.11 61.29 2031.94 58.93 2041.97 56.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2042.51 58.9 2048.71 54.84 2041.33 54.14 ",
		pos="e,2050.2,54.479 1701,95.003 1765.7,91.283 1899.4,81.898 2011,63 2021.1,61.288 2031.9,58.927 2042,56.51"];
	pvacseq -> mhc_ii_ranked_epitopes	[_draw_="c 7 -#000000 B 7 1701 96.53 1783.82 95.04 1983.17 88.82 2148 63 2158.57 61.34 2169.89 58.93 2180.32 56.44 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2180.78 58.85 2186.99 54.8 2179.61 54.09 ",
		pos="e,2188.5,54.44 1701,96.529 1783.8,95.036 1983.2,88.819 2148,63 2158.6,61.344 2169.9,58.931 2180.3,56.441"];
	pvacseq -> mhc_ii_filtered_epitopes	[_draw_="c 7 -#000000 B 7 1700.97 97.51 1799.57 98.23 2066.69 96.64 2286 63 2296.72 61.36 2308.2 58.95 2318.77 56.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2319.33 58.84 2325.55 54.81 2318.17 54.08 ",
		pos="e,2327,54.456 1701,97.51 1799.6,98.23 2066.7,96.637 2286,63 2296.7,61.356 2308.2,58.947 2318.8,56.457"];
	pvacseq -> mhc_i_ranked_epitopes	[_draw_="c 7 -#000000 B 7 1623.11 94.57 1562.35 90.4 1441.36 80.58 1340 63 1329.89 61.25 1319.07 58.87 1309.04 56.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1309.68 54.09 1302.3 54.79 1308.51 58.84 ",
		pos="e,1300.8,54.424 1623.1,94.571 1562.3,90.399 1441.4,80.579 1340,63 1329.9,61.247 1319.1,58.872 1309,56.453"];
	pvacseq -> combined_all_epitopes	[_draw_="c 7 -#000000 B 7 1623.13 90.75 1584.82 84.42 1524.68 74 1473 63 1463.76 61.03 1453.87 58.72 1444.56 56.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1445.4 54.13 1438.01 54.83 1444.22 58.89 ",
		pos="e,1436.5,54.469 1623.1,90.75 1584.8,84.415 1524.7,74.004 1473,63 1463.8,61.033 1453.9,58.721 1444.6,56.448"];
	pvacseq -> mhc_i_all_epitopes	[_draw_="c 7 -#000000 B 4 1639.87 88.58 1617.47 80.05 1582.68 66.81 1557.84 57.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1558.99 55.17 1551.57 54.97 1557.25 59.75 ",
		pos="e,1550.2,54.434 1639.9,88.578 1617.5,80.052 1582.7,66.81 1557.8,57.359"];
	pvacseq -> combined_ranked_epitopes	[_draw_="c 7 -#000000 B 4 1662 88.58 1662 81.52 1662 71.24 1662 62.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1664.45 62.78 1662 55.78 1659.55 62.78 ",
		pos="e,1662,54.265 1662,88.578 1662,81.523 1662,71.24 1662,62.547"];
	add_tumor_rna_bam_readcount_to_vcf -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 4 3137.95 268.5 3115.58 261.73 3084.11 252.2 3059.9 244.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3060.85 242.6 3053.44 242.92 3059.43 247.29 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3113.5 253.6 0 13 3 -vcf ",
		label=vcf,
		lp="3113.5,255.5",
		pos="e,3052,242.48 3137.9,268.5 3115.6,261.73 3084.1,252.2 3059.9,244.87"];
	default1	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 3292 268.5 3292 287.5 3342 287.5 3342 268.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3317 275.5 0 34 6 -\"gene\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"gene\"",
		pos="3317,278",
		rects="3292,268.5,3342,287.5",
		width=0.69444];
	default1 -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 7 3292.08 268.97 3290.71 268.62 3289.34 268.29 3288 268 3270.2 264.12 3174.18 252.12 3103.04 243.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3103.68 241.09 3096.44 242.68 3103.09 245.95 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3251.5 253.6 0 41 9 -data_type ",
		label=data_type,
		lp="3251.5,255.5",
		pos="e,3094.9,242.49 3292.1,268.97 3290.7,268.62 3289.3,268.29 3288,268 3270.2,264.12 3174.2,252.12 3103,243.48"];
	default2	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 3100 223.5 3100 242.5 3172 242.5 3172 223.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3136 230.5 0 56 12 -\"transcript\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"transcript\"",
		pos="3136,233",
		rects="3100,223.5,3172,242.5",
		width=1];
	default2 -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 4 3113.87 223.5 3096.69 216.91 3072.7 207.7 3053.82 200.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3054.91 198.24 3047.49 198.02 3053.15 202.82 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3110.5 208.6 0 41 9 -data_type ",
		label=data_type,
		lp="3110.5,210.5",
		pos="e,3046.1,197.48 3113.9,223.5 3096.7,216.91 3072.7,207.7 3053.8,200.45"];
	default3	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 3083.5 313.5 3083.5 332.5 3130.5 332.5 3130.5 313.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3107 320.5 0 31 5 -\"RNA\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"RNA\"",
		pos="3107,323",
		rects="3083.5,313.5,3130.5,332.5",
		width=0.65278];
	default3 -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 3106.15 313.8 3106.02 308.16 3106.82 300.84 3111 296 3112.25 294.56 3113.61 293.23 3115.07 292.02 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3116.3 294.15 3120.76 288.22 3113.58 290.07 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3131.5 298.6 0 41 9 -data_type ",
		label=data_type,
		lp="3131.5,300.5",
		pos="e,3122,287.38 3106.1,313.8 3106,308.16 3106.8,300.84 3111,296 3112.2,294.56 3113.6,293.23 3115.1,292.02"];
}