digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 593 443 593 443 0 ",
		bb="0,0,443,593",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 24 530 24 585 421 585 421 530 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 74 573 0 84 15 -Workflow Inputs ",
			bb="24,530,421,585",
			label="Workflow Inputs",
			lheight=0.15,
			lp="74,575.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 32.5 538.5 32.5 557.5 95.5 557.5 95.5 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 64 545.5 0 47 9 -reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference,
			pos="64,548",
			rects="32.5,538.5,95.5,557.5",
			width=0.875];
		interval_list	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 173 538.5 173 557.5 247 557.5 247 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 210 545.5 0 58 13 -interval_list ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=interval_list,
			pos="210,548",
			rects="173,538.5,247,557.5",
			width=1.0278];
		insert_size	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 99.5 538.5 99.5 557.5 168.5 557.5 168.5 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 134 545.5 0 53 11 -insert_size ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=insert_size,
			pos="134,548",
			rects="99.5,538.5,168.5,557.5",
			width=0.95833];
		normal_cram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 251.5 538.5 251.5 557.5 332.5 557.5 332.5 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 292 545.5 0 65 11 -normal_cram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_cram,
			pos="292,548",
			rects="251.5,538.5,332.5,557.5",
			width=1.125];
		tumor_cram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 337 538.5 337 557.5 413 557.5 413 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 375 545.5 0 60 10 -tumor_cram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_cram,
			pos="375,548",
			rects="337,538.5,413,557.5",
			width=1.0556];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 58 8 58 63 233 63 233 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 112 15 0 92 16 -Workflow Outputs ",
			bb="58,8,233,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="112,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		unfiltered_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 66.5 35.5 66.5 54.5 149.5 54.5 149.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 108 42.5 0 67 14 -unfiltered_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=unfiltered_vcf,
			pos="108,45",
			rects="66.5,35.5,149.5,54.5",
			width=1.1528];
		filtered_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 153.5 35.5 153.5 54.5 224.5 54.5 224.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 189 42.5 0 55 12 -filtered_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=filtered_vcf,
			pos="189,45",
			rects="153.5,35.5,224.5,54.5",
			width=0.98611];
	}
	region_filter	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 59.5 215.5 59.5 234.5 200.5 234.5 200.5 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 130 222.5 0 125 25 -SelectVariants (GATK 3.6) ",
		height=0.27778,
		label="SelectVariants (GATK 3.6)",
		pos="130,225",
		rects="59.5,215.5,200.5,234.5",
		width=1.9583];
	reference -> region_filter	[_draw_="c 7 -#000000 B 10 59.35 538.62 54.32 528.74 47 511.68 47 496 47 496 47 496 47 269 47 253.66 58.32 243.79 72.59 237.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 73.25 239.81 78.87 234.97 71.46 235.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 67 380.6 0 40 9 -reference ",
		label=reference,
		lp="67,382.5",
		pos="e,80.281,234.42 59.355,538.62 54.321,528.74 47,511.68 47,496 47,496 47,496 47,269 47,253.66 58.316,243.79 72.591,237.43"];
	filter	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 79.5 80.5 79.5 99.5 180.5 99.5 180.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 130 87.5 0 85 18 -fp_filter workflow ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="fp_filter workflow",
		pos="130,90",
		rects="79.5,80.5,180.5,99.5",
		width=1.4028];
	reference -> filter	[_draw_="c 7 -#000000 B 10 39.44 538.66 21.39 530.79 0 517.03 0 496 0 496 0 496 0 134 0 117.77 36.99 106.62 71.51 99.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 71.83 102.18 78.25 98.46 70.92 97.37 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 20 313.1 0 40 9 -reference ",
		label=reference,
		lp="20,315",
		pos="e,79.739,98.177 39.439,538.66 21.391,530.79 0,517.03 0,496 0,496 0,496 0,134 0,117.77 36.988,106.62 71.505,99.748"];
	pindel_cat	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 137.5 440.5 137.5 459.5 270.5 459.5 270.5 440.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 204 447.5 0 117 21 -Per-chromosome pindel ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="Per-chromosome pindel",
		pos="204,450",
		rects="137.5,440.5,270.5,459.5",
		width=1.8472];
	reference -> pindel_cat	[_draw_="c 7 -#000000 B 7 62.86 538.68 61.55 525.65 61.05 500.32 74 485 82.77 474.62 110.48 466.65 138.08 461.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 138.34 463.48 144.74 459.74 137.4 458.67 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 94 493.1 0 40 9 -reference ",
		label=reference,
		lp="94,495",
		pos="e,146.23,459.45 62.856,538.68 61.551,525.65 61.053,500.32 74,485 82.77,474.62 110.48,466.65 138.08,461.04"];
	somaticfilter	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 65.5 350.5 65.5 369.5 194.5 369.5 194.5 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 130 357.5 0 113 24 -pindel somatic filter v1 ",
		height=0.27778,
		label="pindel somatic filter v1",
		pos="130,360",
		rects="65.5,350.5,194.5,369.5",
		width=1.7917];
	reference -> somaticfilter	[_draw_="c 7 -#000000 B 7 62.95 538.82 61.67 526.8 60.22 503.78 65 485 75.78 442.68 103.45 398.68 118.99 376.2 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 120.85 377.81 122.88 370.68 116.85 374.99 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 102 448.1 0 40 9 -reference ",
		label=reference,
		lp="102,450",
		pos="e,123.75,369.44 62.947,538.82 61.665,526.8 60.216,503.78 65,485 75.783,442.68 103.45,398.68 118.99,376.2"];
	interval_list -> region_filter	[_draw_="c 7 -#000000 B 16 230.43 538.57 245.73 532.2 264.58 524.18 268 522 277.55 515.9 279.27 513.28 287 505 290.46 501.3 294 501.07 294 \
496 294 496 294 496 294 269 294 249.61 250.58 238.79 208.43 232.86 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 208.79 230.43 201.53 231.93 208.14 235.29 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 317.5 380.6 0 47 13 -interval_list ",
		label=interval_list,
		lp="317.5,382.5",
		pos="e,200.03,231.73 230.43,538.57 245.73,532.2 264.58,524.18 268,522 277.55,515.9 279.27,513.28 287,505 290.46,501.3 294,501.07 294,\
496 294,496 294,496 294,269 294,249.61 250.58,238.79 208.43,232.86"];
	get_chromosome_list	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 165 485.5 165 504.5 287 504.5 287 485.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 226 492.5 0 106 19 -get_chromosome_list ",
		height=0.27778,
		label=get_chromosome_list,
		pos="226,495",
		rects="165,485.5,287,504.5",
		width=1.6944];
	interval_list -> get_chromosome_list	[_draw_="c 7 -#000000 B 4 212.64 538.58 214.88 531.45 218.15 521.02 220.89 512.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 223.2 513.12 222.95 505.71 218.52 511.65 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 243.5 515.6 0 47 13 -interval_list ",
		label=interval_list,
		lp="243.5,517.5",
		pos="e,223.41,504.26 212.64,538.58 214.88,531.45 218.15,521.02 220.89,512.27"];
	insert_size -> pindel_cat	[_draw_="c 7 -#000000 B 7 128.13 538.64 120.05 525.99 107.7 501.69 119 485 126.02 474.64 136.76 467.43 148.27 462.42 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 148.88 464.82 154.51 459.99 147.1 460.25 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 141 493.1 0 44 11 -insert_size ",
		label=insert_size,
		lp="141,495",
		pos="e,155.92,459.44 128.13,538.64 120.05,525.99 107.7,501.69 119,485 126.02,474.64 136.76,467.43 148.27,462.42"];
	normal_cram -> pindel_cat	[_draw_="c 7 -#000000 B 10 294.5 538.76 295.83 533.92 297.33 527.67 298 522 299.99 505.19 298.03 499.32 289 485 282.53 474.73 272.35 467.56 \
261.26 462.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 262.28 460.33 254.87 460 260.45 464.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 324.5 493.1 0 53 11 -normal_cram ",
		label=normal_cram,
		lp="324.5,495",
		pos="e,253.46,459.43 294.5,538.76 295.83,533.92 297.33,527.67 298,522 299.99,505.19 298.03,499.32 289,485 282.53,474.73 272.35,467.56 \
261.26,462.56"];
	tumor_cram -> filter	[_draw_="c 7 -#000000 B 10 390.39 538.66 404.1 529.99 422 515.02 422 496 422 496 422 496 422 134 422 110.63 273.72 98.73 188.49 93.82 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 188.83 91.39 181.71 93.44 188.56 96.28 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 432.5 313.1 0 21 4 -cram ",
		label=cram,
		lp="432.5,315",
		pos="e,180.2,93.356 390.39,538.66 404.1,529.99 422,515.02 422,496 422,496 422,496 422,134 422,110.63 273.72,98.732 188.49,93.823"];
	tumor_cram -> pindel_cat	[_draw_="c 7 -#000000 B 7 374.37 538.81 372.88 525.48 367.98 499.17 352 485 340.27 474.6 307.5 466.53 275.77 460.86 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 276.54 458.51 269.23 459.73 275.71 463.34 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 389.5 493.1 0 49 10 -tumor_cram ",
		label=tumor_cram,
		lp="389.5,495",
		pos="e,267.74,459.47 374.37,538.81 372.88,525.48 367.98,499.17 352,485 340.27,474.6 307.5,466.53 275.77,460.86"];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 99 260.5 99 279.5 161 279.5 161 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 130 267.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="130,270",
		rects="99,260.5,161,279.5",
		width=0.86111];
	index -> region_filter	[_draw_="c 7 -#000000 B 4 130 260.71 130 255.59 130 248.85 130 242.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 132.45 242.78 130 235.78 127.55 242.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 136.5 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="136.5,247.5",
		pos="e,130,234.27 130,260.71 130,255.59 130,248.85 130,242.67"];
	remove_end_tags	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 65.5 170.5 65.5 189.5 194.5 189.5 194.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 130 177.5 0 113 20 -remove END INFO tags ",
		height=0.27778,
		label="remove END INFO tags",
		pos="130,180",
		rects="65.5,170.5,194.5,189.5",
		width=1.7917];
	region_filter -> remove_end_tags	[_draw_="c 7 -#000000 B 4 130 215.71 130 210.59 130 203.85 130 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 132.45 197.78 130 190.78 127.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 136.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="136.5,202.5",
		pos="e,130,189.27 130,215.71 130,210.59 130,203.85 130,197.67"];
	bgzip	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 97.5 305.5 97.5 324.5 162.5 324.5 162.5 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 130 312.5 0 49 9 -bgzip VCF ",
		height=0.27778,
		label="bgzip VCF",
		pos="130,315",
		rects="97.5,305.5,162.5,324.5",
		width=0.90278];
	bgzip -> index	[_draw_="c 7 -#000000 B 4 130 305.71 130 300.59 130 293.85 130 287.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 132.45 287.78 130 280.78 127.55 287.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 136.5 290.6 0 13 3 -vcf ",
		label=vcf,
		lp="136.5,292.5",
		pos="e,130,279.27 130,305.71 130,300.59 130,293.85 130,287.67"];
	cat_all	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 116.5 395.5 116.5 414.5 165.5 414.5 165.5 395.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 141 402.5 0 33 7 -cat_all ",
		height=0.27778,
		label=cat_all,
		pos="141,405",
		rects="116.5,395.5,165.5,414.5",
		width=0.68056];
	cat_all -> somaticfilter	[_draw_="c 7 -#000000 B 4 138.88 395.71 137.54 390.47 135.76 383.53 134.15 377.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 136.6 376.91 132.49 370.73 131.85 378.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 185 380.6 0 98 21 -pindel_output_summary ",
		label=pindel_output_summary,
		lp="185,382.5",
		pos="e,132.11,369.27 138.88,395.71 137.54,390.47 135.76,383.53 134.15,377.24"];
	reindex	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 99 125.5 99 144.5 161 144.5 161 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 130 132.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="130,135",
		rects="99,125.5,161,144.5",
		width=0.86111];
	reindex -> filter	[_draw_="c 7 -#000000 B 4 130 125.71 130 120.59 130 113.85 130 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 132.45 107.78 130 100.78 127.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 136.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="136.5,112.5",
		pos="e,130,99.265 130,125.71 130,120.59 130,113.85 130,107.67"];
	get_chromosome_list -> pindel_cat	[_draw_="c 7 -#000000 B 4 221.76 485.71 219.02 480.36 215.37 473.22 212.09 466.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 214.29 465.73 208.92 460.61 209.93 467.96 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 243 470.6 0 54 10 -chromosome ",
		label=chromosome,
		lp="243,472.5",
		pos="e,208.23,459.27 221.76,485.71 219.02,480.36 215.37,473.22 212.09,466.81"];
	filter -> unfiltered_vcf	[_draw_="c 7 -#000000 B 4 125.76 80.71 123.02 75.36 119.37 68.22 116.09 61.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 118.29 60.73 112.92 55.61 113.93 62.96 ",
		pos="e,112.23,54.265 125.76,80.709 123.02,75.355 119.37,68.217 116.09,61.807"];
	filter -> filtered_vcf	[_draw_="c 7 -#000000 B 4 141.66 80.5 149.9 74.5 161.12 66.32 170.57 59.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 171.93 61.47 176.14 55.37 169.04 57.51 ",
		pos="e,177.37,54.478 141.66,80.505 149.9,74.497 161.12,66.32 170.57,59.435"];
	pindel_cat -> cat_all	[_draw_="c 7 -#000000 B 4 191.55 440.5 182.67 434.44 170.54 426.16 160.39 419.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 161.83 417.25 154.67 415.33 159.07 421.3 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 230.5 425.6 0 105 22 -chromosome_pindel_outs ",
		label=chromosome_pindel_outs,
		lp="230.5,427.5",
		pos="e,153.42,414.48 191.55,440.5 182.67,434.44 170.54,426.16 160.39,419.23"];
	remove_end_tags -> reindex	[_draw_="c 7 -#000000 B 4 130 170.71 130 165.59 130 158.85 130 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 132.45 152.78 130 145.78 127.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 136.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="136.5,157.5",
		pos="e,130,144.27 130,170.71 130,165.59 130,158.85 130,152.67"];
	somaticfilter -> bgzip	[_draw_="c 7 -#000000 B 4 130 350.71 130 345.59 130 338.85 130 332.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 132.45 332.78 130 325.78 127.55 332.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 136.5 335.6 0 13 4 -file ",
		label=file,
		lp="136.5,337.5",
		pos="e,130,324.27 130,350.71 130,345.59 130,338.85 130,332.67"];
}