digraph workflow {
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		bb="0,0,1400,233",
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		label="\N",
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		fontcolor=black,
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			lp="328,215.5",
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		bait_intervals	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 638.5 178.5 638.5 197.5 721.5 197.5 721.5 178.5 ",
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			rects="638.5,178.5,721.5,197.5",
			width=1.1528];
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			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 751 185.5 0 34 6 -access ",
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			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 817 185.5 0 58 12 -scatter_plot ",
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			label=scatter_plot,
			pos="817,188",
			rects="780,178.5,854,197.5",
			width=1.0278];
		normal_cram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 553.5 178.5 553.5 197.5 634.5 197.5 634.5 178.5 ",
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			rects="553.5,178.5,634.5,197.5",
			width=1.125];
		drop_low_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 858.5 178.5 858.5 197.5 969.5 197.5 969.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 914 185.5 0 95 17 -drop_low_coverage ",
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			pos="914,188",
			rects="858.5,178.5,969.5,197.5",
			width=1.5417];
		tumor_cram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 406 178.5 406 197.5 482 197.5 482 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 444 185.5 0 60 10 -tumor_cram ",
			fillcolor="#94DDF4",
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			label=tumor_cram,
			pos="444,188",
			rects="406,178.5,482,197.5",
			width=1.0556];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 8 8 63 1392 63 1392 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 62 15 0 92 16 -Workflow Outputs ",
			bb="8,8,1392,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="62,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
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		cn_scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 35.5 16.5 54.5 107.5 54.5 107.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 62 42.5 0 75 15 -cn_scatter_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_scatter_plot,
			pos="62,45",
			rects="16.5,35.5,107.5,54.5",
			width=1.2639];
		cn_diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 112 35.5 112 54.5 186 54.5 186 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 149 42.5 0 58 10 -cn_diagram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_diagram,
			pos="149,45",
			rects="112,35.5,186,54.5",
			width=1.0278];
		reference_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 190.5 35.5 190.5 54.5 303.5 54.5 303.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 247 42.5 0 97 18 -reference_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_coverage,
			pos="247,45",
			rects="190.5,35.5,303.5,54.5",
			width=1.5694];
		normal_target_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 308 35.5 308 54.5 444 54.5 444 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 376 42.5 0 120 22 -normal_target_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_target_coverage,
			pos="376,45",
			rects="308,35.5,444,54.5",
			width=1.8889];
		tumor_segmented_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 448.5 35.5 448.5 54.5 587.5 54.5 587.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 518 42.5 0 123 22 -tumor_segmented_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_segmented_ratios,
			pos="518,45",
			rects="448.5,35.5,587.5,54.5",
			width=1.9306];
		intervals_target	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 592 35.5 592 54.5 686 54.5 686 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 639 42.5 0 78 16 -intervals_target ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=intervals_target,
			pos="639,45",
			rects="592,35.5,686,54.5",
			width=1.3056];
		intervals_antitarget	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 690.5 35.5 690.5 54.5 803.5 54.5 803.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 747 42.5 0 97 20 -intervals_antitarget ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=intervals_antitarget,
			pos="747,45",
			rects="690.5,35.5,803.5,54.5",
			width=1.5694];
		normal_antitarget_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 807.5 35.5 807.5 54.5 962.5 54.5 962.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 885 42.5 0 139 26 -normal_antitarget_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_antitarget_coverage,
			pos="885,45",
			rects="807.5,35.5,962.5,54.5",
			width=2.1528];
		tumor_bin_level_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 967 35.5 967 54.5 1095 54.5 1095 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1031 42.5 0 112 22 -tumor_bin_level_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bin_level_ratios,
			pos="1031,45",
			rects="967,35.5,1095,54.5",
			width=1.7778];
		tumor_target_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1099.5 35.5 1099.5 54.5 1230.5 54.5 1230.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1165 42.5 0 115 21 -tumor_target_coverage ",
			fillcolor="#94DDF4",
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			label=tumor_target_coverage,
			pos="1165,45",
			rects="1099.5,35.5,1230.5,54.5",
			width=1.8194];
		tumor_antitarget_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1234.5 35.5 1234.5 54.5 1383.5 54.5 1383.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1309 42.5 0 133 25 -tumor_antitarget_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_antitarget_coverage,
			pos="1309,45",
			rects="1234.5,35.5,1383.5,54.5",
			width=2.0694];
	}
	run_cnvkit	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 605 80.5 605 99.5 673 99.5 673 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 639 87.5 0 52 10 -run_cnvkit ",
		height=0.27778,
		label=run_cnvkit,
		pos="639,90",
		rects="605,80.5,673,99.5",
		width=0.94444];
	method -> run_cnvkit	[_draw_="c 7 -#000000 B 7 303.7 178.85 290.72 166.48 270.13 142.55 283 125 301.28 100.08 506.41 93.36 596.74 91.6 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 596.64 94.05 603.59 91.47 596.55 89.15 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 299 133.1 0 32 6 -method ",
		label=method,
		lp="299,135",
		pos="e,605.11,91.445 303.7,178.85 290.72,166.48 270.13,142.55 283,125 301.28,100.08 506.41,93.359 596.74,91.6"];
	diagram -> run_cnvkit	[_draw_="c 7 -#000000 B 7 357.21 178.68 336.44 166.68 304.41 143.9 321 125 338.9 104.6 514.98 95.53 597.16 92.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 596.86 94.84 603.77 92.13 596.68 89.95 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 338 133.1 0 34 7 -diagram ",
		label=diagram,
		lp="338,135",
		pos="e,605.28,92.077 357.21,178.68 336.44,166.68 304.41,143.9 321,125 338.9,104.6 514.98,95.528 597.16,92.38"];
	tumor_cram_to_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 356.5 125.5 356.5 144.5 509.5 144.5 509.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 433 132.5 0 137 25 -samtools view cram to bam ",
		height=0.27778,
		label="samtools view cram to bam",
		pos="433,135",
		rects="356.5,125.5,509.5,144.5",
		width=2.125];
	reference -> tumor_cram_to_bam	[_draw_="c 7 -#000000 B 7 502.83 178.62 494.3 173.85 483.49 167.7 474 162 467 157.79 459.42 153.04 452.7 148.77 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 454.32 146.89 447.1 145.18 451.67 151.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 494 155.6 0 40 9 -reference ",
		label=reference,
		lp="494,157.5",
		pos="e,445.83,144.36 502.83,178.62 494.3,173.85 483.49,167.7 474,162 467,157.79 459.42,153.04 452.7,148.77"];
	normal_cram_to_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 562.5 125.5 562.5 144.5 715.5 144.5 715.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 639 132.5 0 137 25 -samtools view cram to bam ",
		height=0.27778,
		label="samtools view cram to bam",
		pos="639,135",
		rects="562.5,125.5,715.5,144.5",
		width=2.125];
	reference -> normal_cram_to_bam	[_draw_="c 7 -#000000 B 7 529.71 178.68 540.89 171.08 558.43 159.98 575 153 580.46 150.7 586.32 148.63 592.19 146.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 592.7 149.21 598.73 144.88 591.32 144.51 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 595 155.6 0 40 9 -reference ",
		label=reference,
		lp="595,157.5",
		pos="e,600.18,144.46 529.71,178.68 540.89,171.08 558.43,159.98 575,153 580.46,150.7 586.32,148.63 592.19,146.81"];
	reference -> run_cnvkit	[_draw_="c 7 -#000000 B 7 515.66 178.74 512.53 165.78 508.7 140.55 521 125 538.9 102.37 570.86 94.16 597.01 91.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 596.99 93.92 603.76 90.89 596.58 89.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 541 133.1 0 40 9 -reference ",
		label=reference,
		lp="541,135",
		pos="e,605.27,90.761 515.66,178.74 512.53,165.78 508.7,140.55 521,125 538.9,102.37 570.86,94.165 597.01,91.458"];
	bait_intervals -> run_cnvkit	[_draw_="c 7 -#000000 B 7 690.88 178.69 704.91 166.91 726.36 144.58 716 125 708.91 111.6 694.91 103.47 680.77 98.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 681.8 96.3 674.39 96.58 680.36 100.99 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 745.5 133.1 0 55 14 -bait_intervals ",
		label=bait_intervals,
		lp="745.5,135",
		pos="e,672.95,96.132 690.88,178.69 704.91,166.91 726.36,144.58 716,125 708.91,111.6 694.91,103.47 680.77,98.55"];
	access -> run_cnvkit	[_draw_="c 7 -#000000 B 7 758.86 178.6 769.76 165.9 786.77 141.54 774 125 762.65 110.3 716.28 101 681.02 95.91 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 681.55 93.51 674.28 94.97 680.87 98.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 792.5 133.1 0 29 6 -access ",
		label=access,
		lp="792.5,135",
		pos="e,672.78,94.765 758.86,178.6 769.76,165.9 786.77,141.54 774,125 762.65,110.3 716.28,101 681.02,95.908"];
	scatter_plot -> run_cnvkit	[_draw_="c 7 -#000000 B 7 818.32 178.68 819.9 165.64 820.89 140.31 808 125 792.03 106.01 725.84 97.36 681.2 93.62 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 681.53 91.19 674.36 93.07 681.14 96.07 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 841.5 133.1 0 49 12 -scatter_plot ",
		label=scatter_plot,
		lp="841.5,135",
		pos="e,672.85,92.953 818.32,178.68 819.9,165.64 820.89,140.31 808,125 792.03,106.01 725.84,97.359 681.2,93.617"];
	normal_cram -> normal_cram_to_bam	[_draw_="c 7 -#000000 B 4 601.43 178.58 608.18 170.93 618.28 159.48 626.31 150.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 627.91 152.27 630.71 145.4 624.24 149.03 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 633.5 155.6 0 21 4 -cram ",
		label=cram,
		lp="633.5,157.5",
		pos="e,631.71,144.26 601.43,178.58 608.18,170.93 618.28,159.48 626.31,150.39"];
	drop_low_coverage -> run_cnvkit	[_draw_="c 7 -#000000 B 7 910.13 178.66 903.39 165.12 888.17 138.52 867 125 837 105.84 738.62 96.89 681.37 93.21 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 681.54 90.77 674.4 92.78 681.23 95.66 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 927.5 133.1 0 79 17 -drop_low_coverage ",
		label=drop_low_coverage,
		lp="927.5,135",
		pos="e,672.89,92.689 910.13,178.66 903.39,165.12 888.17,138.52 867,125 837,105.84 738.62,96.892 681.37,93.214"];
	tumor_cram -> tumor_cram_to_bam	[_draw_="c 7 -#000000 B 4 442.18 178.58 440.66 171.52 438.44 161.24 436.57 152.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 438.97 152.07 435.1 145.74 434.18 153.1 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 448.5 155.6 0 21 4 -cram ",
		label=cram,
		lp="448.5,157.5",
		pos="e,434.78,144.26 442.18,178.58 440.66,171.52 438.44,161.24 436.57,152.55"];
	tumor_cram_to_bam -> run_cnvkit	[_draw_="c 7 -#000000 B 7 441.4 125.68 448.03 119.67 457.83 111.93 468 108 490.7 99.22 553.9 94.73 596.77 92.62 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 596.67 95.08 603.55 92.3 596.44 90.19 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 491 110.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="491,112.5",
		pos="e,605.06,92.234 441.4,125.68 448.03,119.67 457.83,111.93 468,108 490.7,99.223 553.9,94.729 596.77,92.624"];
	normal_cram_to_bam -> run_cnvkit	[_draw_="c 7 -#000000 B 4 639 125.71 639 120.59 639 113.85 639 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 641.45 107.78 639 100.78 636.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 664.5 110.6 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="664.5,112.5",
		pos="e,639,99.265 639,125.71 639,120.59 639,113.85 639,107.67"];
	run_cnvkit -> cn_scatter_plot	[_draw_="c 7 -#000000 B 10 605.08 87.83 536.61 85.41 376.98 79.44 243 72 184.29 68.74 168.62 74.74 111 63 104.02 61.58 96.68 59.41 89.87 \
57.1 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 91.01 54.9 83.59 54.86 89.36 59.52 ",
		pos="e,82.164,54.351 605.08,87.832 536.61,85.41 376.98,79.442 243,72 184.29,68.739 168.62,74.741 111,63 104.02,61.579 96.684,59.414 89.869,\
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	run_cnvkit -> cn_diagram	[_draw_="c 7 -#000000 B 7 605.26 88.5 514.91 86.94 268.96 81.11 190 63 184.45 61.73 178.69 59.77 173.3 57.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 174.53 55.5 167.13 55.02 172.62 60.01 ",
		pos="e,165.73,54.432 605.26,88.504 514.91,86.943 268.96,81.109 190,63 184.45,61.727 178.69,59.772 173.3,57.635"];
	run_cnvkit -> reference_coverage	[_draw_="c 7 -#000000 B 7 605.37 88.5 545.25 87.13 415.56 82.03 308 63 299.22 61.45 289.88 59.17 281.22 56.79 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 282.03 54.47 274.62 54.91 280.68 59.18 ",
		pos="e,273.17,54.491 605.37,88.5 545.25,87.132 415.56,82.028 308,63 299.22,61.447 289.88,59.172 281.22,56.789"];
	run_cnvkit -> normal_target_coverage	[_draw_="c 7 -#000000 B 7 605.03 85.38 566.71 81.06 502.62 73.14 448 63 437.94 61.13 427.16 58.78 417.09 56.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 417.68 54.05 410.31 54.81 416.55 58.81 ",
		pos="e,408.83,54.458 605.03,85.379 566.71,81.063 502.62,73.141 448,63 437.94,61.132 427.16,58.779 417.09,56.425"];
	run_cnvkit -> tumor_segmented_ratios	[_draw_="c 7 -#000000 B 4 615.09 80.5 596.37 73.85 570.15 64.53 549.67 57.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 550.7 55.02 543.28 54.98 549.06 59.64 ",
		pos="e,541.86,54.478 615.09,80.505 596.37,73.85 570.15,64.532 549.67,57.256"];
	run_cnvkit -> intervals_target	[_draw_="c 7 -#000000 B 4 639 80.71 639 75.59 639 68.85 639 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 641.45 62.78 639 55.78 636.55 62.78 ",
		pos="e,639,54.265 639,80.709 639,75.593 639,68.848 639,62.666"];
	run_cnvkit -> intervals_antitarget	[_draw_="c 7 -#000000 B 4 660.34 80.5 676.9 73.91 700.04 64.7 718.24 57.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 718.7 59.9 724.3 55.04 716.89 55.35 ",
		pos="e,725.71,54.478 660.34,80.505 676.9,73.908 700.04,64.696 718.24,57.45"];
	run_cnvkit -> normal_antitarget_coverage	[_draw_="c 7 -#000000 B 7 672.9 84.17 706.31 79.29 758.79 71.3 804 63 815.26 60.93 827.35 58.51 838.68 56.14 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 838.93 58.59 845.28 54.75 837.92 53.8 ",
		pos="e,846.76,54.441 672.9,84.171 706.31,79.289 758.79,71.3 804,63 815.26,60.933 827.35,58.506 838.68,56.144"];
	run_cnvkit -> tumor_bin_level_ratios	[_draw_="c 7 -#000000 B 7 672.8 88.12 731.98 86.17 858.03 80.21 963 63 973.04 61.35 983.77 58.97 993.68 56.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 994.13 58.92 1000.3 54.81 992.91 54.17 ",
		pos="e,1001.8,54.432 672.8,88.12 731.98,86.173 858.03,80.212 963,63 973.04,61.354 983.77,58.97 993.68,56.506"];
	run_cnvkit -> tumor_target_coverage	[_draw_="c 7 -#000000 B 7 672.76 89.2 748.78 89.2 939.03 86.6 1096 63 1106.4 61.44 1117.52 59.03 1127.73 56.52 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1128.05 58.96 1134.22 54.86 1126.84 54.22 ",
		pos="e,1135.7,54.49 672.76,89.203 748.78,89.199 939.03,86.596 1096,63 1106.4,61.437 1117.5,59.031 1127.7,56.516"];
	run_cnvkit -> tumor_antitarget_coverage	[_draw_="c 7 -#000000 B 7 672.89 89.56 763.73 90.62 1020.11 90.7 1231 63 1243.17 61.4 1256.25 58.87 1268.16 56.25 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1268.43 58.7 1274.72 54.77 1267.35 53.92 ",
		pos="e,1276.2,54.433 672.89,89.559 763.73,90.616 1020.1,90.699 1231,63 1243.2,61.402 1256.3,58.875 1268.2,56.253"];
}