digraph workflow { graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 638 4386 638 4386 0 ", bb="0,0,4386,638", bgcolor="#eeeeee", clusterrank=local, color=black, dpi=96, fontsize=10, labeljust=left, nodesep=0.05, ranksep=0.22, xdotversion=1.7 ]; node [color=black, fillcolor=lightgoldenrodyellow, fontcolor=black, fontname=Helvetica, fontsize=10, height=0, label="\N", shape=record, style=filled, width=0 ]; edge [arrowsize=0.7, color=black, fontcolor=black, fontname=Helvetica, fontsize=8 ]; subgraph cluster_outputs { graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 1141 45 1141 100 2973 100 2973 45 ", _ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 1195 52 0 92 16 -Workflow Outputs ", bb="1141,45,2973,100", label="Workflow Outputs", labelloc=b, lheight=0.15, lp="1195,54.5", lwidth=1.28, rank=same, style=dashed ]; varscan_unfiltered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1268.5 72.5 1268.5 91.5 1395.5 91.5 1395.5 72.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1332 79.5 0 111 22 -varscan_unfiltered_vcf ", fillcolor="#94DDF4", height=0.27778, label=varscan_unfiltered_vcf, pos="1332,82", rects="1268.5,72.5,1395.5,91.5", width=1.7639]; varscan_filtered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1149.5 72.5 1149.5 91.5 1264.5 91.5 1264.5 72.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1207 79.5 0 99 20 -varscan_filtered_vcf ", fillcolor="#94DDF4", height=0.27778, label=varscan_filtered_vcf, pos="1207,82", rects="1149.5,72.5,1264.5,91.5", width=1.5972]; pindel_unfiltered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1981.5 72.5 1981.5 91.5 2100.5 91.5 2100.5 72.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2041 79.5 0 103 21 -pindel_unfiltered_vcf ", fillcolor="#94DDF4", height=0.27778, label=pindel_unfiltered_vcf, pos="2041,82", rects="1981.5,72.5,2100.5,91.5", width=1.6528]; docm_filtered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1642 72.5 1642 91.5 1746 91.5 1746 72.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1694 79.5 0 88 17 -docm_filtered_vcf ", fillcolor="#94DDF4", height=0.27778, label=docm_filtered_vcf, pos="1694,82", rects="1642,72.5,1746,91.5", width=1.4444]; final_tsv [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2497 72.5 2497 91.5 2555 91.5 2555 72.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2526 79.5 0 42 9 -final_tsv ", fillcolor="#94DDF4", height=0.27778, label=final_tsv, pos="2526,82", rects="2497,72.5,2555,91.5", width=0.80556]; mutect_filtered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1526.5 72.5 1526.5 91.5 1637.5 91.5 1637.5 72.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1582 79.5 0 95 19 -mutect_filtered_vcf ", fillcolor="#94DDF4", height=0.27778, label=mutect_filtered_vcf, pos="1582,82", rects="1526.5,72.5,1637.5,91.5", width=1.5417]; final_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2805 72.5 2805 91.5 2863 91.5 2863 72.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2834 79.5 0 42 9 -final_vcf ", fillcolor="#94DDF4", height=0.27778, label=final_vcf, pos="2834,82", rects="2805,72.5,2863,91.5", width=0.80556]; mutect_unfiltered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1399.5 72.5 1399.5 91.5 1522.5 91.5 1522.5 72.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1461 79.5 0 107 21 -mutect_unfiltered_vcf ", fillcolor="#94DDF4", height=0.27778, label=mutect_unfiltered_vcf, pos="1461,82", rects="1399.5,72.5,1522.5,91.5", width=1.7083]; normal_bam_readcount_tsv [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2559 72.5 2559 91.5 2711 91.5 2711 72.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2635 79.5 0 136 24 -normal_bam_readcount_tsv ", fillcolor="#94DDF4", height=0.27778, label=normal_bam_readcount_tsv, pos="2635,82", rects="2559,72.5,2711,91.5", width=2.1111]; pindel_filtered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1870.5 72.5 1870.5 91.5 1977.5 91.5 1977.5 72.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1924 79.5 0 91 19 -pindel_filtered_vcf ", fillcolor="#94DDF4", height=0.27778, label=pindel_filtered_vcf, pos="1924,82", rects="1870.5,72.5,1977.5,91.5", width=1.4861]; tumor_bam_readcount_tsv [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2345.5 72.5 2345.5 91.5 2492.5 91.5 2492.5 72.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2419 79.5 0 131 23 -tumor_bam_readcount_tsv ", fillcolor="#94DDF4", height=0.27778, label=tumor_bam_readcount_tsv, pos="2419,82", rects="2345.5,72.5,2492.5,91.5", width=2.0417]; docm_unfiltered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1750 72.5 1750 91.5 1866 91.5 1866 72.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1808 79.5 0 100 19 -docm_unfiltered_vcf ", fillcolor="#94DDF4", height=0.27778, label=docm_unfiltered_vcf, pos="1808,82", rects="1750,72.5,1866,91.5", width=1.6111]; final_filtered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2867 72.5 2867 91.5 2965 91.5 2965 72.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2916 79.5 0 82 18 -final_filtered_vcf ", fillcolor="#94DDF4", height=0.27778, label=final_filtered_vcf, pos="2916,82", rects="2867,72.5,2965,91.5", width=1.3611]; vep_summary [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2715 72.5 2715 91.5 2801 91.5 2801 72.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2758 79.5 0 70 11 -vep_summary ", fillcolor="#94DDF4", height=0.27778, label=vep_summary, pos="2758,82", rects="2715,72.5,2801,91.5", width=1.1944]; strelka_filtered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2231 72.5 2231 91.5 2341 91.5 2341 72.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2286 79.5 0 94 20 -strelka_filtered_vcf ", fillcolor="#94DDF4", height=0.27778, label=strelka_filtered_vcf, pos="2286,82", rects="2231,72.5,2341,91.5", width=1.5278]; strelka_unfiltered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2105 72.5 2105 91.5 2227 91.5 2227 72.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2166 79.5 0 106 22 -strelka_unfiltered_vcf ", fillcolor="#94DDF4", height=0.27778, label=strelka_unfiltered_vcf, pos="2166,82", rects="2105,72.5,2227,91.5", width=1.6944]; } subgraph cluster_inputs { graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 575 8 630 4378 630 4378 575 ", _ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 618 0 84 15 -Workflow Inputs ", bb="8,575,4378,630", label="Workflow Inputs", lheight=0.15, lp="58,620.5", lwidth=1.17, rank=same, style=dashed ]; reference [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2357.5 583.5 2357.5 602.5 2420.5 602.5 2420.5 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2389 590.5 0 47 9 -reference ", fillcolor="#94DDF4", height=0.27778, label=reference, pos="2389,593", rects="2357.5,583.5,2420.5,602.5", width=0.875]; varscan_min_var_freq [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 525.5 583.5 525.5 602.5 650.5 602.5 650.5 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 588 590.5 0 109 20 -varscan_min_var_freq ", fillcolor="#94DDF4", height=0.27778, label=varscan_min_var_freq, pos="588,593", rects="525.5,583.5,650.5,602.5", width=1.7361]; panel_of_normals_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1560 583.5 1560 602.5 1684 602.5 1684 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1622 590.5 0 108 20 -panel_of_normals_vcf ", fillcolor="#94DDF4", height=0.27778, label=panel_of_normals_vcf, pos="1622,593", rects="1560,583.5,1684,602.5", width=1.7222]; synonyms_file [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3330.5 583.5 3330.5 602.5 3417.5 602.5 3417.5 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3374 590.5 0 71 13 -synonyms_file ", fillcolor="#94DDF4", height=0.27778, label=synonyms_file, pos="3374,593", rects="3330.5,583.5,3417.5,602.5", width=1.2083]; filter_gnomADe_maximum_population_allele_frequency [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3421.5 583.5 3421.5 602.5 3712.5 602.5 3712.5 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3567 590.5 0 275 50 -filter_gnomADe_maximum_population_allele_frequency ", fillcolor="#94DDF4", height=0.27778, label=filter_gnomADe_maximum_population_allele_frequency, pos="3567,593", rects="3421.5,583.5,3712.5,602.5", width=4.0417]; pindel_insert_size [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2000 583.5 2000 602.5 2104 602.5 2104 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2052 590.5 0 88 18 -pindel_insert_size ", fillcolor="#94DDF4", height=0.27778, label=pindel_insert_size, pos="2052,593", rects="2000,583.5,2104,602.5", width=1.4444]; vep_pick [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3176 583.5 3176 602.5 3236 602.5 3236 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3206 590.5 0 44 8 -vep_pick ", fillcolor="#94DDF4", height=0.27778, label=vep_pick, pos="3206,593", rects="3176,583.5,3236,602.5", width=0.83333]; varscan_max_normal_freq [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 583.5 16 602.5 162 602.5 162 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 89 590.5 0 130 23 -varscan_max_normal_freq ", fillcolor="#94DDF4", height=0.27778, label=varscan_max_normal_freq, pos="89,593", rects="16,583.5,162,602.5", width=2.0278]; normal_cram [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1834.5 583.5 1834.5 602.5 1915.5 602.5 1915.5 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1875 590.5 0 65 11 -normal_cram ", fillcolor="#94DDF4", height=0.27778, label=normal_cram, pos="1875,593", rects="1834.5,583.5,1915.5,602.5", width=1.125]; vep_cache_dir [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3240 583.5 3240 602.5 3326 602.5 3326 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3283 590.5 0 70 13 -vep_cache_dir ", fillcolor="#94DDF4", height=0.27778, label=vep_cache_dir, pos="3283,593", rects="3240,583.5,3326,602.5", width=1.1944]; mutect_scatter_count [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 655 583.5 655 602.5 777 602.5 777 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 716 590.5 0 106 20 -mutect_scatter_count ", fillcolor="#94DDF4", height=0.27778, label=mutect_scatter_count, pos="716,593", rects="655,583.5,777,602.5", width=1.6944]; tumor_cram [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1920 583.5 1920 602.5 1996 602.5 1996 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1958 590.5 0 60 10 -tumor_cram ", fillcolor="#94DDF4", height=0.27778, label=tumor_cram, pos="1958,593", rects="1920,583.5,1996,602.5", width=1.0556]; strelka_cpu_reserved [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2108 583.5 2108 602.5 2228 602.5 2228 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2168 590.5 0 104 20 -strelka_cpu_reserved ", fillcolor="#94DDF4", height=0.27778, label=strelka_cpu_reserved, pos="2168,593", rects="2108,583.5,2228,602.5", width=1.6667]; filter_mapq0_threshold [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3716.5 583.5 3716.5 602.5 3845.5 602.5 3845.5 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3781 590.5 0 113 22 -filter_mapq0_threshold ", fillcolor="#94DDF4", height=0.27778, label=filter_mapq0_threshold, pos="3781,593", rects="3716.5,583.5,3845.5,602.5", width=1.7917]; mutect_max_alt_alleles_in_normal_count [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 781 583.5 781 602.5 1001 602.5 1001 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 891 590.5 0 204 38 -mutect_max_alt_alleles_in_normal_count ", fillcolor="#94DDF4", height=0.27778, label=mutect_max_alt_alleles_in_normal_count, pos="891,593", rects="781,583.5,1001,602.5", width=3.0556]; strelka_exome_mode [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2232.5 583.5 2232.5 602.5 2353.5 602.5 2353.5 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2293 590.5 0 105 18 -strelka_exome_mode ", fillcolor="#94DDF4", height=0.27778, label=strelka_exome_mode, pos="2293,593", rects="2232.5,583.5,2353.5,602.5", width=1.6806]; readcount_minimum_mapping_quality [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2742.5 583.5 2742.5 602.5 2947.5 602.5 2947.5 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2845 590.5 0 189 33 -readcount_minimum_mapping_quality ", fillcolor="#94DDF4", height=0.27778, label=readcount_minimum_mapping_quality, pos="2845,593", rects="2742.5,583.5,2947.5,602.5", width=2.8472]; varscan_min_coverage [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 166.5 583.5 166.5 602.5 295.5 602.5 295.5 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 231 590.5 0 113 20 -varscan_min_coverage ", fillcolor="#94DDF4", height=0.27778, label=varscan_min_coverage, pos="231,593", rects="166.5,583.5,295.5,602.5", width=1.7917]; cle_vcf_filter [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3849.5 583.5 3849.5 602.5 3928.5 602.5 3928.5 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3889 590.5 0 63 14 -cle_vcf_filter ", fillcolor="#94DDF4", height=0.27778, label=cle_vcf_filter, pos="3889,593", rects="3849.5,583.5,3928.5,602.5", width=1.0972]; mutect_max_alt_allele_in_normal_fraction [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1005.5 583.5 1005.5 602.5 1230.5 602.5 1230.5 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1118 590.5 0 209 40 -mutect_max_alt_allele_in_normal_fraction ", fillcolor="#94DDF4", height=0.27778, label=mutect_max_alt_allele_in_normal_fraction, pos="1118,593", rects="1005.5,583.5,1230.5,602.5", width=3.125]; varscan_strand_filter [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 299.5 583.5 299.5 602.5 418.5 602.5 418.5 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 359 590.5 0 103 21 -varscan_strand_filter ", fillcolor="#94DDF4", height=0.27778, label=varscan_strand_filter, pos="359,593", rects="299.5,583.5,418.5,602.5", width=1.6528]; annotate_coding_only [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2614 583.5 2614 602.5 2738 602.5 2738 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2676 590.5 0 108 20 -annotate_coding_only ", fillcolor="#94DDF4", height=0.27778, label=annotate_coding_only, pos="2676,593", rects="2614,583.5,2738,602.5", width=1.7222]; readcount_minimum_base_quality [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2424.5 583.5 2424.5 602.5 2609.5 602.5 2609.5 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2517 590.5 0 169 30 -readcount_minimum_base_quality ", fillcolor="#94DDF4", height=0.27778, label=readcount_minimum_base_quality, pos="2517,593", rects="2424.5,583.5,2609.5,602.5", width=2.5694]; varscan_p_value [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 423 583.5 423 602.5 521 602.5 521 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 472 590.5 0 82 15 -varscan_p_value ", fillcolor="#94DDF4", height=0.27778, label=varscan_p_value, pos="472,593", rects="423,583.5,521,602.5", width=1.3611]; hgvs_annotation [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2952 583.5 2952 602.5 3050 602.5 3050 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3001 590.5 0 82 15 -hgvs_annotation ", fillcolor="#94DDF4", height=0.27778, label=hgvs_annotation, pos="3001,593", rects="2952,583.5,3050,602.5", width=1.3611]; docm_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1688 583.5 1688 602.5 1752 602.5 1752 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1720 590.5 0 48 8 -docm_vcf ", fillcolor="#94DDF4", height=0.27778, label=docm_vcf, pos="1720,593", rects="1688,583.5,1752,602.5", width=0.88889]; variants_to_table_fields [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3932.5 583.5 3932.5 602.5 4065.5 602.5 4065.5 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3999 590.5 0 117 24 -variants_to_table_fields ", fillcolor="#94DDF4", height=0.27778, label=variants_to_table_fields, pos="3999,593", rects="3932.5,583.5,4065.5,602.5", width=1.8472]; cosmic_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1234.5 583.5 1234.5 602.5 1305.5 602.5 1305.5 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1270 590.5 0 55 10 -cosmic_vcf ", fillcolor="#94DDF4", height=0.27778, label=cosmic_vcf, pos="1270,593", rects="1234.5,583.5,1305.5,602.5", width=0.98611]; custom_gnomad_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3054 583.5 3054 602.5 3172 602.5 3172 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3113 590.5 0 102 17 -custom_gnomad_vcf ", fillcolor="#94DDF4", height=0.27778, label=custom_gnomad_vcf, pos="3113,593", rects="3054,583.5,3172,602.5", width=1.6389]; vep_to_table_fields [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4258.5 583.5 4258.5 602.5 4369.5 602.5 4369.5 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4314 590.5 0 95 19 -vep_to_table_fields ", fillcolor="#94DDF4", height=0.27778, label=vep_to_table_fields, pos="4314,593", rects="4258.5,583.5,4369.5,602.5", width=1.5417]; dbsnp_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1310 583.5 1310 602.5 1376 602.5 1376 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1343 590.5 0 50 9 -dbsnp_vcf ", fillcolor="#94DDF4", height=0.27778, label=dbsnp_vcf, pos="1343,593", rects="1310,583.5,1376,602.5", width=0.91667]; mutect_artifact_detection_mode [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1380 583.5 1380 602.5 1556 602.5 1556 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1468 590.5 0 160 30 -mutect_artifact_detection_mode ", fillcolor="#94DDF4", height=0.27778, label=mutect_artifact_detection_mode, pos="1468,593", rects="1380,583.5,1556,602.5", width=2.4444]; variants_to_table_genotype_fields [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4070 583.5 4070 602.5 4254 602.5 4254 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4162 590.5 0 168 33 -variants_to_table_genotype_fields ", fillcolor="#94DDF4", height=0.27778, label=variants_to_table_genotype_fields, pos="4162,593", rects="4070,583.5,4254,602.5", width=2.5556]; interval_list [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1756 583.5 1756 602.5 1830 602.5 1830 583.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1793 590.5 0 58 13 -interval_list ", fillcolor="#94DDF4", height=0.27778, label=interval_list, pos="1793,593", rects="1756,583.5,1830,602.5", width=1.0278]; } strelka [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 2237.5 530.5 2237.5 549.5 2334.5 549.5 2334.5 530.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2286 537.5 0 81 16 -strelka workflow ", fillcolor="#F3CEA1", height=0.27778, label="strelka workflow", pos="2286,540", rects="2237.5,530.5,2334.5,549.5", width=1.3472]; reference -> strelka [_draw_="c 7 -#000000 B 13 2403.57 583.51 2409.94 580.23 2417.62 576.83 2425 575 2462.49 565.68 2624.59 586.02 2598 558 2592.18 551.87 2454.44 \ 550.46 2446 550 2411.72 548.13 2373.31 545.98 2342.72 544.24 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2342.95 541.8 2335.82 543.85 2342.67 546.69 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2620 560.6 0 40 9 -reference ", label=reference, lp="2620,562.5", pos="e,2334.3,543.76 2403.6,583.51 2409.9,580.23 2417.6,576.83 2425,575 2462.5,565.68 2624.6,586.02 2598,558 2592.2,551.87 2454.4,550.46 \ 2446,550 2411.7,548.13 2373.3,545.98 2342.7,544.24"]; tumor_cram_to_bam [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 2447.5 530.5 2447.5 549.5 2578.5 549.5 2578.5 530.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2513 537.5 0 115 20 -cram_to_bam workflow ", fillcolor="#F3CEA1", height=0.27778, label="cram_to_bam workflow", pos="2513,540", rects="2447.5,530.5,2578.5,549.5", width=1.8194]; reference -> tumor_cram_to_bam [_draw_="c 7 -#000000 B 13 2403.22 583.65 2409.65 580.32 2417.48 576.83 2425 575 2436.67 572.16 2632.67 575.65 2641 567 2643.78 564.12 2643.64 \ 561.01 2641 558 2640.74 557.7 2615.02 554.25 2586.71 550.55 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2587.03 548.12 2579.78 549.64 2586.4 552.98 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2663 560.6 0 40 9 -reference ", label=reference, lp="2663,562.5", pos="e,2578.3,549.44 2403.2,583.65 2409.6,580.32 2417.5,576.83 2425,575 2436.7,572.16 2632.7,575.65 2641,567 2643.8,564.12 2643.6,561.01 \ 2641,558 2640.7,557.7 2615,554.25 2586.7,550.55"]; combine [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2376.5 485.5 2376.5 504.5 2531.5 504.5 2531.5 485.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2454 492.5 0 139 26 -CombineVariants (GATK 3.6) ", height=0.27778, label="CombineVariants (GATK 3.6)", pos="2454,495", rects="2376.5,485.5,2531.5,504.5", width=2.1528]; reference -> combine [_draw_="c 7 -#000000 B 19 2403.21 583.62 2409.64 580.27 2417.47 576.79 2425 575 2441.33 571.11 2715.29 579.02 2727 567 2729.79 564.13 2727.86 \ 561.91 2727 558 2725.52 551.3 2719.59 533.97 2714 530 2699.25 519.53 2650.95 524.19 2633 522 2594.04 517.25 2550.46 510.94 2516.05 \ 505.73 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2516.75 503.35 2509.46 504.72 2516.01 508.2 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2744 538.1 0 40 9 -reference ", label=reference, lp="2744,540", pos="e,2508,504.5 2403.2,583.62 2409.6,580.27 2417.5,576.79 2425,575 2441.3,571.11 2715.3,579.02 2727,567 2729.8,564.13 2727.9,561.91 \ 2727,558 2725.5,551.3 2719.6,533.97 2714,530 2699.3,519.53 2651,524.19 2633,522 2594,517.25 2550.5,510.94 2516.1,505.73"]; docm [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 1677.5 530.5 1677.5 549.5 1800.5 549.5 1800.5 530.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1739 537.5 0 107 20 -Detect Docm variants ", fillcolor="#F3CEA1", height=0.27778, label="Detect Docm variants", pos="1739,540", rects="1677.5,530.5,1800.5,549.5", width=1.7083]; reference -> docm [_draw_="c 7 -#000000 B 13 2376.63 583.51 2370.23 578.91 2362.44 572.95 2356 567 2352.07 563.37 2352.86 560.24 2348 558 2327.56 548.58 1965.49 \ 550.72 1943 550 1898.18 548.57 1847.84 546.35 1808.38 544.48 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1808.75 542.05 1801.64 544.16 1808.52 546.94 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2376 560.6 0 40 9 -reference ", label=reference, lp="2376,562.5", pos="e,1800.1,544.09 2376.6,583.51 2370.2,578.91 2362.4,572.95 2356,567 2352.1,563.37 2352.9,560.24 2348,558 2327.6,548.58 1965.5,550.72 \ 1943,550 1898.2,548.57 1847.8,546.35 1808.4,544.48"]; filter_vcf [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 3357 215.5 3357 234.5 3485 234.5 3485 215.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3421 222.5 0 112 25 -Apply filters to VCF file ", fillcolor="#F3CEA1", height=0.27778, label="Apply filters to VCF file", pos="3421,225", rects="3357,215.5,3485,234.5", width=1.7778]; reference -> filter_vcf [_draw_="c 7 -#000000 B 28 2403.21 583.6 2409.63 580.26 2417.47 576.78 2425 575 2501.36 556.97 2700.44 578.85 2778 567 2804.98 562.88 2812.17 \ 561.33 2837 550 2837.86 549.61 2893.1 513.28 2894 513 2941.29 498.07 3070.35 521.81 3117 505 3130.72 500.06 3131.36 493.78 3143 \ 485 3163.3 469.69 3189 476.42 3189 451 3189 451 3189 451 3189 269 3189 235.98 3280.99 227.5 3349.12 225.74 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3348.84 228.2 3355.78 225.59 3348.73 223.3 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3209 403.1 0 40 9 -reference ", label=reference, lp="3209,405", pos="e,3357.3,225.56 2403.2,583.6 2409.6,580.26 2417.5,576.78 2425,575 2501.4,556.97 2700.4,578.85 2778,567 2805,562.88 2812.2,561.33 \ 2837,550 2837.9,549.61 2893.1,513.28 2894,513 2941.3,498.07 3070.3,521.81 3117,505 3130.7,500.06 3131.4,493.78 3143,485 3163.3,469.69 \ 3189,476.42 3189,451 3189,451 3189,451 3189,269 3189,235.98 3281,227.5 3349.1,225.74"]; tumor_bam_readcount [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2581 440.5 2581 459.5 2691 459.5 2691 440.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2636 447.5 0 94 17 -run bam-readcount ", height=0.27778, label="run bam-readcount", pos="2636,450", rects="2581,440.5,2691,459.5", width=1.5278]; reference -> tumor_bam_readcount [_draw_="c 7 -#000000 B 28 2403.21 583.62 2409.64 580.27 2417.47 576.79 2425 575 2491.17 559.25 2665.33 584.74 2731 567 2746.17 562.9 2753.99 \ 563.52 2762 550 2766.53 542.35 2768.08 536.48 2762 530 2743.11 509.86 2656.89 542.14 2638 522 2635.26 519.08 2636.59 516.74 2638 \ 513 2639.66 508.58 2643.34 509.42 2645 505 2648.13 496.68 2646.15 493.81 2645 485 2644.23 479.12 2642.75 472.81 2641.21 467.24 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2643.62 466.72 2639.26 460.71 2638.92 468.12 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2670.5 515.6 0 65 15 -reference_fasta ", label=reference_fasta, lp="2670.5,517.5", pos="e,2638.8,459.26 2403.2,583.62 2409.6,580.27 2417.5,576.79 2425,575 2491.2,559.25 2665.3,584.74 2731,567 2746.2,562.9 2754,563.52 \ 2762,550 2766.5,542.35 2768.1,536.48 2762,530 2743.1,509.86 2656.9,542.14 2638,522 2635.3,519.08 2636.6,516.74 2638,513 2639.7,508.58 \ 2643.3,509.42 2645,505 2648.1,496.68 2646.1,493.81 2645,485 2644.2,479.12 2642.8,472.81 2641.2,467.24"]; annotate_variants [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2753.5 395.5 2753.5 414.5 2926.5 414.5 2926.5 395.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2840 402.5 0 157 32 -Ensembl Variant Effect Predictor ", height=0.27778, label="Ensembl Variant Effect Predictor", pos="2840,405", rects="2753.5,395.5,2926.5,414.5", width=2.4028]; reference -> annotate_variants [_draw_="c 7 -#000000 B 19 2403.21 583.61 2409.64 580.26 2417.47 576.78 2425 575 2496.81 557.99 2684.72 581.88 2757 567 2809.54 556.18 2821.34 \ 546.61 2869 522 2875.57 518.61 2875.95 515.24 2883 513 2902.29 506.87 3051 519.62 3065 505 3113.21 454.62 3008.23 428.22 2925.96 \ 415.72 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2926.35 413.3 2919.07 414.7 2925.64 418.14 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3096 493.1 0 40 9 -reference ", label=reference, lp="3096,495", pos="e,2917.6,414.48 2403.2,583.61 2409.6,580.26 2417.5,576.78 2425,575 2496.8,557.99 2684.7,581.88 2757,567 2809.5,556.18 2821.3,546.61 \ 2869,522 2875.6,518.61 2876,515.24 2883,513 2902.3,506.87 3051,519.62 3065,505 3113.2,454.62 3008.2,428.22 2926,415.72"]; normal_bam_readcount [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2821 440.5 2821 459.5 2931 459.5 2931 440.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2876 447.5 0 94 17 -run bam-readcount ", height=0.27778, label="run bam-readcount", pos="2876,450", rects="2821,440.5,2931,459.5", width=1.5278]; reference -> normal_bam_readcount [_draw_="c 7 -#000000 B 16 2403.21 583.61 2409.64 580.26 2417.47 576.79 2425 575 2459.82 566.74 2713.56 579.76 2747 567 2763.76 560.6 2791.19 \ 521.48 2807 513 2820.3 505.87 2827.63 513.65 2840 505 2853.5 495.56 2863.33 479.28 2869.27 467.06 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2871.47 468.14 2872.13 460.76 2867.01 466.12 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2839.5 515.6 0 65 15 -reference_fasta ", label=reference_fasta, lp="2839.5,517.5", pos="e,2872.8,459.38 2403.2,583.61 2409.6,580.26 2417.5,576.79 2425,575 2459.8,566.74 2713.6,579.76 2747,567 2763.8,560.6 2791.2,521.48 \ 2807,513 2820.3,505.87 2827.6,513.65 2840,505 2853.5,495.56 2863.3,479.28 2869.3,467.06"]; variants_to_table [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 3606.5 72.5 3606.5 91.5 3747.5 91.5 3747.5 72.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3677 79.5 0 125 25 -SelectVariants (GATK 3.6) ", height=0.27778, label="SelectVariants (GATK 3.6)", pos="3677,82", rects="3606.5,72.5,3747.5,91.5", width=1.9583]; reference -> variants_to_table [_draw_="c 7 -#000000 B 28 2403.2 583.6 2409.63 580.25 2417.46 576.77 2425 575 2465.78 565.4 2760.21 570.06 2802 567 2961.93 555.28 3020.95 \ 601.89 3160 522 3177.88 511.73 3171.78 497.74 3188 485 3235.14 447.99 3257.76 457.5 3312 432 3359.49 409.67 3368.56 398.18 3417 \ 378 3529.17 331.29 3677 415.01 3677 293.5 3677 293.5 3677 293.5 3677 134 3677 122.59 3677 109.75 3677 99.81 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3679.45 99.82 3677 92.82 3674.55 99.82 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3688 335.6 0 40 9 -reference ", label=reference, lp="3688,337.5", pos="e,3677,91.304 2403.2,583.6 2409.6,580.25 2417.5,576.77 2425,575 2465.8,565.4 2760.2,570.06 2802,567 2961.9,555.28 3021,601.89 3160,\ 522 3177.9,511.73 3171.8,497.74 3188,485 3235.1,447.99 3257.8,457.5 3312,432 3359.5,409.67 3368.6,398.18 3417,378 3529.2,331.29 \ 3677,415.01 3677,293.5 3677,293.5 3677,293.5 3677,134 3677,122.59 3677,109.75 3677,99.808"]; mutect [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 1179 530.5 1179 549.5 1317 549.5 1317 530.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1248 537.5 0 122 24 -mutect parallel workflow ", fillcolor="#F3CEA1", height=0.27778, label="mutect parallel workflow", pos="1248,540", rects="1179,530.5,1317,549.5", width=1.9167]; reference -> mutect [_draw_="c 7 -#000000 B 16 2374.06 583.58 2367.99 580.48 2360.82 577.19 2354 575 2333.82 568.53 2325.53 577.28 2307 567 2302.32 564.4 2303.87 \ 560.22 2299 558 2283.26 550.81 1693.3 550.29 1676 550 1553.38 547.92 1411.02 544.78 1325.31 542.82 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1325.5 540.37 1318.45 542.66 1325.39 545.27 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2327 560.6 0 40 9 -reference ", label=reference, lp="2327,562.5", pos="e,1316.9,542.62 2374.1,583.58 2368,580.48 2360.8,577.19 2354,575 2333.8,568.53 2325.5,577.28 2307,567 2302.3,564.4 2303.9,560.22 \ 2299,558 2283.3,550.81 1693.3,550.29 1676,550 1553.4,547.92 1411,544.78 1325.3,542.82"]; normal_cram_to_bam [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 2582.5 530.5 2582.5 549.5 2713.5 549.5 2713.5 530.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2648 537.5 0 115 20 -cram_to_bam workflow ", fillcolor="#F3CEA1", height=0.27778, label="cram_to_bam workflow", pos="2648,540", rects="2582.5,530.5,2713.5,549.5", width=1.8194]; reference -> normal_cram_to_bam [_draw_="c 7 -#000000 B 10 2403.21 583.63 2409.64 580.29 2417.47 576.81 2425 575 2439 571.63 2673.98 577.34 2684 567 2688.81 562.04 2685.84 \ 557.37 2679.95 553.39 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2681.29 551.33 2673.97 550.09 2678.92 555.62 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2706 560.6 0 40 9 -reference ", label=reference, lp="2706,562.5", pos="e,2672.6,549.36 2403.2,583.63 2409.6,580.29 2417.5,576.81 2425,575 2439,571.63 2674,577.34 2684,567 2688.8,562.04 2685.8,557.37 \ 2680,553.39"]; pindel [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 1945 530.5 1945 549.5 2079 549.5 2079 530.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2012 537.5 0 118 24 -pindel parallel workflow ", fillcolor="#F3CEA1", height=0.27778, label="pindel parallel workflow", pos="2012,540", rects="1945,530.5,2079,549.5", width=1.8611]; reference -> pindel [_draw_="c 7 -#000000 B 7 2409.25 583.59 2422.52 576.94 2435.89 567.26 2427 558 2426.82 557.81 2206.59 548.87 2087.07 544.03 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2087.25 541.59 2080.15 543.76 2087.05 546.49 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2449 560.6 0 40 9 -reference ", label=reference, lp="2449,562.5", pos="e,2078.6,543.69 2409.3,583.59 2422.5,576.94 2435.9,567.26 2427,558 2426.8,557.81 2206.6,548.87 2087.1,544.03"]; varscan [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 883.5 530.5 883.5 549.5 986.5 549.5 986.5 530.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 935 537.5 0 87 16 -Varscan Workflow ", fillcolor="#F3CEA1", height=0.27778, label="Varscan Workflow", pos="935,540", rects="883.5,530.5,986.5,549.5", width=1.4306]; reference -> varscan [_draw_="c 7 -#000000 B 16 2375.22 583.58 2368.98 580.22 2361.36 576.75 2354 575 2325.41 568.2 1851.72 579.24 1825 567 1820.13 564.77 1821.87 \ 560.22 1817 558 1800.83 550.62 1194.77 550.44 1177 550 1114.82 548.46 1043.69 545.69 994.72 543.63 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 995.06 541.19 987.96 543.35 994.85 546.09 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1845 560.6 0 40 9 -reference ", label=reference, lp="1845,562.5", pos="e,986.45,543.28 2375.2,583.58 2369,580.22 2361.4,576.75 2354,575 2325.4,568.2 1851.7,579.24 1825,567 1820.1,564.77 1821.9,560.22 \ 1817,558 1800.8,550.62 1194.8,550.44 1177,550 1114.8,548.46 1043.7,545.69 994.72,543.63"]; varscan_min_var_freq -> varscan [_draw_="c 7 -#000000 B 7 548.84 583.5 530.62 577.84 515.12 569.34 526 558 537.88 545.61 764.81 542.24 875.41 541.33 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 875.32 543.78 882.3 541.28 875.28 538.88 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 552 560.6 0 52 12 -min_var_freq ", label=min_var_freq, lp="552,562.5", pos="e,883.81,541.26 548.84,583.5 530.62,577.84 515.12,569.34 526,558 537.88,545.61 764.81,542.24 875.41,541.33"]; panel_of_normals_vcf -> mutect [_draw_="c 7 -#000000 B 10 1594.99 583.55 1583.15 580.24 1569.01 576.8 1556 575 1546.48 573.68 1216.72 573.88 1210 567 1205.08 561.96 1208.05 \ 557.31 1214.06 553.38 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1215.17 555.56 1220.21 550.12 1212.88 551.23 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1254 560.6 0 88 20 -panel_of_normals_vcf ", label=panel_of_normals_vcf, lp="1254,562.5", pos="e,1221.5,549.41 1595,583.55 1583.1,580.24 1569,576.8 1556,575 1546.5,573.68 1216.7,573.88 1210,567 1205.1,561.96 1208,557.31 1214.1,\ 553.38"]; synonyms_file -> annotate_variants [_draw_="c 7 -#000000 B 13 3369.35 583.62 3364.32 573.74 3357 556.68 3357 541 3357 541 3357 541 3357 449 3357 425.9 3334.25 429.22 3312 423 \ 3273.05 412.12 2999.52 417.03 2931.48 414.86 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2931.9 412.42 2924.8 414.56 2931.69 417.32 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3386 493.1 0 58 13 -synonyms_file ", label=synonyms_file, lp="3386,495", pos="e,2923.3,414.5 3369.4,583.62 3364.3,573.74 3357,556.68 3357,541 3357,541 3357,541 3357,449 3357,425.9 3334.2,429.22 3312,423 3273.1,\ 412.12 2999.5,417.03 2931.5,414.86"]; filter_gnomADe_maximum_population_allele_frequency -> filter_vcf [_draw_="c 7 -#000000 B 16 3514.24 583.55 3472.78 575.36 3422 561.21 3422 541 3422 541 3422 541 3422 471.5 3422 442.39 3421 435.11 3421 406 \ 3421 406 3421 406 3421 269 3421 260.31 3421 250.63 3421 242.65 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3423.45 242.76 3421 235.76 3418.55 242.76 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3534 403.1 0 226 50 -filter_gnomADe_maximum_population_allele_frequency ", label=filter_gnomADe_maximum_population_allele_frequency, lp="3534,405", pos="e,3421,234.24 3514.2,583.55 3472.8,575.36 3422,561.21 3422,541 3422,541 3422,541 3422,471.5 3422,442.39 3421,435.11 3421,406 3421,\ 406 3421,406 3421,269 3421,260.31 3421,250.63 3421,242.65"]; pindel_insert_size -> pindel [_draw_="c 7 -#000000 B 7 2050.7 583.67 2049.19 576.27 2046.08 565.48 2040 558 2038.98 556.74 2037.84 555.55 2036.62 554.43 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2038.28 552.62 2031.22 550.34 2035.31 556.52 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2067 560.6 0 44 11 -insert_size ", label=insert_size, lp="2067,562.5", pos="e,2030,549.42 2050.7,583.67 2049.2,576.27 2046.1,565.48 2040,558 2039,556.74 2037.8,555.55 2036.6,554.43"]; vep_pick -> annotate_variants [_draw_="c 7 -#000000 B 10 3221.78 583.52 3244.58 571.03 3284 548.36 3284 541 3284 541 3284 541 3284 449 3284 411.44 2999.02 417.19 2932.45 \ 414.89 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2932.89 412.46 2925.78 414.56 2932.65 417.36 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3292.5 493.1 0 17 4 -pick ", label=pick, lp="3292.5,495", pos="e,2924.3,414.49 3221.8,583.52 3244.6,571.03 3284,548.36 3284,541 3284,541 3284,541 3284,449 3284,411.44 2999,417.19 2932.4,414.89"]; varscan_max_normal_freq -> varscan [_draw_="c 7 -#000000 B 7 118.09 583.54 147.91 575.31 195.74 563.28 238 558 360.4 542.7 729.7 540.99 875.18 540.92 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 875.09 543.37 882.09 540.92 875.09 538.47 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 273 560.6 0 70 15 -max_normal_freq ", label=max_normal_freq, lp="273,562.5", pos="e,883.6,540.92 118.09,583.54 147.91,575.31 195.74,563.28 238,558 360.4,542.7 729.7,540.99 875.18,540.92"]; normal_cram -> strelka [_draw_="c 7 -#000000 B 13 1892.99 583.66 1901.07 580.32 1910.83 576.84 1920 575 1944.96 569.99 2125.96 577.83 2149 567 2153.84 564.72 2152.27 \ 560.51 2157 558 2169.53 551.35 2200.82 547.14 2229.44 544.57 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2229.55 547.02 2236.31 543.98 2229.13 542.13 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2183.5 560.6 0 53 11 -normal_cram ", label=normal_cram, lp="2183.5,562.5", pos="e,2237.8,543.85 1893,583.66 1901.1,580.32 1910.8,576.84 1920,575 1945,569.99 2126,577.83 2149,567 2153.8,564.72 2152.3,560.51 2157,\ 558 2169.5,551.35 2200.8,547.14 2229.4,544.57"]; normal_cram -> docm [_draw_="c 7 -#000000 B 10 1856.99 583.52 1849.18 580.24 1839.82 576.84 1831 575 1820.98 572.91 1654.08 574.39 1647 567 1634.68 554.14 1648.85 \ 547.49 1669.47 544.11 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1669.55 546.57 1676.14 543.17 1668.87 541.72 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1673.5 560.6 0 53 11 -normal_cram ", label=normal_cram, lp="1673.5,562.5", pos="e,1677.6,542.96 1857,583.52 1849.2,580.24 1839.8,576.84 1831,575 1821,572.91 1654.1,574.39 1647,567 1634.7,554.14 1648.9,547.49 \ 1669.5,544.11"]; normal_cram -> mutect [_draw_="c 7 -#000000 B 13 1857.43 583.63 1849.54 580.28 1839.99 576.8 1831 575 1766.92 562.15 1600.71 581.58 1537 567 1527.5 564.83 1526.46 \ 560.35 1517 558 1481.99 549.32 1391.6 544.93 1325.22 542.81 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1325.43 540.37 1318.36 542.6 1325.28 545.26 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1563.5 560.6 0 53 11 -normal_cram ", label=normal_cram, lp="1563.5,562.5", pos="e,1316.8,542.55 1857.4,583.63 1849.5,580.28 1840,576.8 1831,575 1766.9,562.15 1600.7,581.58 1537,567 1527.5,564.83 1526.5,560.35 \ 1517,558 1482,549.32 1391.6,544.93 1325.2,542.81"]; normal_cram -> normal_cram_to_bam [_draw_="c 7 -#000000 B 13 1892.98 583.61 1901.06 580.26 1910.82 576.79 1920 575 1958.07 567.6 2232.35 579.69 2269 567 2275.3 564.82 2274.7 \ 560.19 2281 558 2310.51 547.72 2520.15 552.02 2576.76 549.92 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2576.86 552.37 2583.71 549.55 2576.59 547.47 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2291.5 560.6 0 21 4 -cram ", label=cram, lp="2291.5,562.5", pos="e,2585.2,549.47 1893,583.61 1901.1,580.26 1910.8,576.79 1920,575 1958.1,567.6 2232.3,579.69 2269,567 2275.3,564.82 2274.7,560.19 \ 2281,558 2310.5,547.72 2520.2,552.02 2576.8,549.92"]; normal_cram -> pindel [_draw_="c 7 -#000000 B 13 1856.97 583.61 1849.16 580.35 1839.8 576.94 1831 575 1817.73 572.07 1718.29 576.92 1709 567 1706.27 564.08 1706.25 \ 560.91 1709 558 1712.89 553.89 1848.26 547.63 1936.72 543.96 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1936.73 546.42 1943.62 543.68 1936.53 541.52 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1735.5 560.6 0 53 11 -normal_cram ", label=normal_cram, lp="1735.5,562.5", pos="e,1945.1,543.62 1857,583.61 1849.2,580.35 1839.8,576.94 1831,575 1817.7,572.07 1718.3,576.92 1709,567 1706.3,564.08 1706.3,560.91 \ 1709,558 1712.9,553.89 1848.3,547.63 1936.7,543.96"]; normal_cram -> varscan [_draw_="c 7 -#000000 B 13 1857.44 583.58 1849.55 580.22 1840 576.75 1831 575 1802.2 569.4 1329.67 579.22 1303 567 1298.13 564.77 1299.83 \ 560.31 1295 558 1288.32 554.81 1094.92 547.05 994.41 543.22 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 994.76 540.78 987.67 542.96 994.57 545.68 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1329.5 560.6 0 53 11 -normal_cram ", label=normal_cram, lp="1329.5,562.5", pos="e,986.16,542.9 1857.4,583.58 1849.6,580.22 1840,576.75 1831,575 1802.2,569.4 1329.7,579.22 1303,567 1298.1,564.77 1299.8,560.31 \ 1295,558 1288.3,554.81 1094.9,547.05 994.41,543.22"]; vep_cache_dir -> annotate_variants [_draw_="c 7 -#000000 B 10 3290.38 583.64 3298.07 574.04 3309 557.5 3309 541 3309 541 3309 541 3309 449 3309 384.07 3325.17 438.99 2931.77 \ 415 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2931.94 412.56 2924.8 414.57 2931.64 417.45 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3329 493.1 0 40 9 -cache_dir ", label=cache_dir, lp="3329,495", pos="e,2923.3,414.48 3290.4,583.64 3298.1,574.04 3309,557.5 3309,541 3309,541 3309,541 3309,449 3309,384.07 3325.2,438.99 2931.8,415"]; mutect_scatter_count -> mutect [_draw_="c 7 -#000000 B 16 686.73 583.54 675.61 580.54 662.79 577.33 651 575 638.02 572.43 600.7 576.96 592 567 589.37 563.99 589.2 560.86 \ 592 558 599.72 550.12 977.97 550.3 989 550 1050.03 548.32 1119.13 545.9 1170.6 543.98 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1170.61 546.44 1177.51 543.73 1170.43 541.54 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 620 560.6 0 56 13 -scatter_count ", label=scatter_count, lp="620,562.5", pos="e,1179,543.67 686.73,583.54 675.61,580.54 662.79,577.33 651,575 638.02,572.43 600.7,576.96 592,567 589.37,563.99 589.2,560.86 592,\ 558 599.72,550.12 977.97,550.3 989,550 1050,548.32 1119.1,545.9 1170.6,543.98"]; tumor_cram -> strelka [_draw_="c 7 -#000000 B 13 1974.74 583.67 1982.27 580.33 1991.39 576.85 2000 575 2045.88 565.16 2166.77 582.68 2211 567 2217.28 564.77 2217.01 \ 560.92 2223 558 2227.61 555.75 2232.56 553.77 2237.59 552.02 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2238.16 554.42 2244.07 549.94 2236.66 549.75 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2247.5 560.6 0 49 10 -tumor_cram ", label=tumor_cram, lp="2247.5,562.5", pos="e,2245.5,549.48 1974.7,583.67 1982.3,580.33 1991.4,576.85 2000,575 2045.9,565.16 2166.8,582.68 2211,567 2217.3,564.77 2217,560.92 \ 2223,558 2227.6,555.75 2232.6,553.77 2237.6,552.02"]; tumor_cram -> tumor_cram_to_bam [_draw_="c 7 -#000000 B 13 1974.72 583.6 1982.25 580.25 1991.37 576.77 2000 575 2021.61 570.57 2376.97 576.24 2397 567 2401.86 564.76 2400.3 \ 560.57 2405 558 2415.49 552.27 2427.35 548.33 2439.28 545.64 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2439.67 548.06 2446.04 544.28 2438.7 543.26 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2415.5 560.6 0 21 4 -cram ", label=cram, lp="2415.5,562.5", pos="e,2447.5,543.98 1974.7,583.6 1982.3,580.25 1991.4,576.77 2000,575 2021.6,570.57 2377,576.24 2397,567 2401.9,564.76 2400.3,560.57 \ 2405,558 2415.5,552.27 2427.4,548.33 2439.3,545.64"]; tumor_cram -> docm [_draw_="c 7 -#000000 B 10 1949.17 583.83 1944.06 579.03 1937.56 572.78 1932 567 1928.29 563.14 1928.78 560.41 1924 558 1904.26 548.02 1852.56 \ 543.86 1808.82 542.14 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1809.07 539.7 1801.99 541.89 1808.9 544.59 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1956.5 560.6 0 49 10 -tumor_cram ", label=tumor_cram, lp="1956.5,562.5", pos="e,1800.5,541.84 1949.2,583.83 1944.1,579.03 1937.6,572.78 1932,567 1928.3,563.14 1928.8,560.41 1924,558 1904.3,548.02 1852.6,543.86 \ 1808.8,542.14"]; tumor_cram -> mutect [_draw_="c 7 -#000000 B 13 1939.46 583.58 1932.25 580.55 1923.85 577.31 1916 575 1897.77 569.63 1890.53 576.38 1874 567 1869.35 564.36 1870.85 \ 560.26 1866 558 1859.95 555.18 1489.36 546.46 1325.03 542.73 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1325.45 540.29 1318.4 542.58 1325.34 545.18 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1898.5 560.6 0 49 10 -tumor_cram ", label=tumor_cram, lp="1898.5,562.5", pos="e,1316.9,542.54 1939.5,583.58 1932.3,580.55 1923.8,577.31 1916,575 1897.8,569.63 1890.5,576.38 1874,567 1869.3,564.36 1870.9,560.26 \ 1866,558 1859.9,555.18 1489.4,546.46 1325,542.73"]; tumor_cram -> pindel [_draw_="c 7 -#000000 B 10 1966.08 583.74 1970.77 578.91 1976.77 572.66 1982 567 1985.63 563.07 1986.09 561.65 1990 558 1991.32 556.77 1992.72 \ 555.53 1994.16 554.33 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1995.37 556.5 1999.3 550.21 1992.3 552.67 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2014.5 560.6 0 49 10 -tumor_cram ", label=tumor_cram, lp="2014.5,562.5", pos="e,2000.5,549.26 1966.1,583.74 1970.8,578.91 1976.8,572.66 1982,567 1985.6,563.07 1986.1,561.65 1990,558 1991.3,556.77 1992.7,555.53 \ 1994.2,554.33"]; tumor_cram -> varscan [_draw_="c 7 -#000000 B 16 1940.84 583.56 1933.39 580.29 1924.44 576.89 1916 575 1884.51 567.96 1801.32 578.04 1771 567 1764.74 564.72 1765.31 \ 560.15 1759 558 1728.39 547.56 1209.33 550.82 1177 550 1114.82 548.42 1043.69 545.66 994.72 543.61 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 995.06 541.17 987.96 543.33 994.85 546.07 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1795.5 560.6 0 49 10 -tumor_cram ", label=tumor_cram, lp="1795.5,562.5", pos="e,986.45,543.26 1940.8,583.56 1933.4,580.29 1924.4,576.89 1916,575 1884.5,567.96 1801.3,578.04 1771,567 1764.7,564.72 1765.3,560.15 \ 1759,558 1728.4,547.56 1209.3,550.82 1177,550 1114.8,548.42 1043.7,545.66 994.72,543.61"]; strelka_cpu_reserved -> strelka [_draw_="c 7 -#000000 B 13 2194.5 583.52 2205.91 580.24 2219.49 576.84 2232 575 2245.42 573.02 2466.57 576.75 2476 567 2478.78 564.13 2478.7 \ 560.95 2476 558 2471.48 553.06 2396.87 547.58 2342.51 544.21 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2342.96 541.78 2335.82 543.8 2342.66 546.67 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2505.5 560.6 0 55 12 -cpu_reserved ", label=cpu_reserved, lp="2505.5,562.5", pos="e,2334.3,543.71 2194.5,583.52 2205.9,580.24 2219.5,576.84 2232,575 2245.4,573.02 2466.6,576.75 2476,567 2478.8,564.13 2478.7,560.95 \ 2476,558 2471.5,553.06 2396.9,547.58 2342.5,544.21"]; filter_mapq0_threshold -> filter_vcf [_draw_="c 7 -#000000 B 10 3752.72 583.51 3715.57 571.94 3655 551.47 3655 541 3655 541 3655 541 3655 269 3655 235.66 3561.94 227.27 3493.2 \ 225.62 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3493.5 223.18 3486.45 225.48 3493.4 228.07 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3702 403.1 0 94 22 -filter_mapq0_threshold ", label=filter_mapq0_threshold, lp="3702,405", pos="e,3484.9,225.45 3752.7,583.51 3715.6,571.94 3655,551.47 3655,541 3655,541 3655,541 3655,269 3655,235.66 3561.9,227.27 3493.2,225.62"]; mutect_max_alt_alleles_in_normal_count -> mutect [_draw_="c 7 -#000000 B 16 840.33 583.51 820.61 580.45 797.79 577.21 777 575 763.16 573.53 661.52 577.15 652 567 649.26 564.08 649.21 560.86 \ 652 558 658.54 551.3 979.64 550.27 989 550 1050.03 548.22 1119.13 545.79 1170.6 543.91 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1170.61 546.36 1177.51 543.66 1170.43 541.47 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 718.5 560.6 0 133 31 -max_alt_alleles_in_normal_count ", label=max_alt_alleles_in_normal_count, lp="718.5,562.5", pos="e,1179,543.6 840.33,583.51 820.61,580.45 797.79,577.21 777,575 763.16,573.53 661.52,577.15 652,567 649.26,564.08 649.21,560.86 652,\ 558 658.54,551.3 979.64,550.27 989,550 1050,548.22 1119.1,545.79 1170.6,543.91"]; strelka_exome_mode -> strelka [_draw_="c 7 -#000000 B 13 2319.93 583.59 2331.53 580.32 2345.31 576.92 2358 575 2368.01 573.49 2533 574.31 2540 567 2542.77 564.11 2542.73 \ 560.92 2540 558 2538.33 556.21 2416.98 548.74 2342.64 544.32 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2342.91 541.88 2335.77 543.91 2342.62 546.77 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2569.5 560.6 0 55 10 -exome_mode ", label=exome_mode, lp="2569.5,562.5", pos="e,2334.3,543.82 2319.9,583.59 2331.5,580.32 2345.3,576.92 2358,575 2368,573.49 2533,574.31 2540,567 2542.8,564.11 2542.7,560.92 \ 2540,558 2538.3,556.21 2417,548.74 2342.6,544.32"]; readcount_minimum_mapping_quality -> tumor_bam_readcount [_draw_="c 7 -#000000 B 7 2884.59 583.53 2931.26 571.75 2999.14 547.85 2971 513 2937.66 471.71 2786.43 457.84 2698.99 453.24 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2699.36 450.81 2692.24 452.9 2699.11 455.7 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3018.5 515.6 0 87 19 -min_mapping_quality ", label=min_mapping_quality, lp="3018.5,517.5", pos="e,2690.7,452.82 2884.6,583.53 2931.3,571.75 2999.1,547.85 2971,513 2937.7,471.71 2786.4,457.84 2699,453.24"]; readcount_minimum_mapping_quality -> normal_bam_readcount [_draw_="c 7 -#000000 B 19 2901.88 583.52 2932.97 578.53 2968.11 572.19 2983 567 3022.99 553.06 3045.24 558.34 3067 522 3069.05 518.57 3069.66 \ 515.98 3067 513 3056.58 501.32 3009.36 514.62 2997 505 2983.13 494.2 2996.63 479.1 2983 468 2975.79 462.13 2958.19 458.26 2939.3 \ 455.72 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2939.61 453.29 2932.36 454.86 2939.01 458.15 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3111.5 515.6 0 87 19 -min_mapping_quality ", label=min_mapping_quality, lp="3111.5,517.5", pos="e,2930.9,454.67 2901.9,583.52 2933,578.53 2968.1,572.19 2983,567 3023,553.06 3045.2,558.34 3067,522 3069.1,518.57 3069.7,515.98 \ 3067,513 3056.6,501.32 3009.4,514.62 2997,505 2983.1,494.2 2996.6,479.1 2983,468 2975.8,462.13 2958.2,458.26 2939.3,455.72"]; varscan_min_coverage -> varscan [_draw_="c 7 -#000000 B 7 253.48 583.61 276.75 575.37 314.36 563.29 348 558 448.15 542.26 746.98 540.72 875.33 540.81 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 875.02 543.26 882.03 540.82 875.03 538.36 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 377 560.6 0 58 12 -min_coverage ", label=min_coverage, lp="377,562.5", pos="e,883.54,540.82 253.48,583.61 276.75,575.37 314.36,563.29 348,558 448.15,542.26 746.98,540.72 875.33,540.81"]; cle_vcf_filter -> filter_vcf [_draw_="c 7 -#000000 B 25 3868.02 583.65 3861.03 580.88 3853.18 577.79 3846 575 3806.53 559.66 3757 583.34 3757 541 3757 541 3757 541 3757 \ 426.5 3757 412.06 3758.47 405.9 3749 395 3722.85 364.91 3666 400.86 3666 361 3666 361 3666 361 3666 269 3666 261.1 3647.32 246.12 \ 3640 243 3614.37 232.05 3546.6 228.06 3493.18 226.66 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3493.31 224.21 3486.25 226.49 3493.19 229.11 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3789.5 403.1 0 65 17 -do_cle_vcf_filter ", label=do_cle_vcf_filter, lp="3789.5,405", pos="e,3484.7,226.45 3868,583.65 3861,580.88 3853.2,577.79 3846,575 3806.5,559.66 3757,583.34 3757,541 3757,541 3757,541 3757,426.5 3757,\ 412.06 3758.5,405.9 3749,395 3722.9,364.91 3666,400.86 3666,361 3666,361 3666,361 3666,269 3666,261.1 3647.3,246.12 3640,243 3614.4,\ 232.05 3546.6,228.06 3493.2,226.66"]; mutect_max_alt_allele_in_normal_fraction -> mutect [_draw_="c 7 -#000000 B 13 1067.02 583.5 1046.82 580.41 1023.37 577.14 1002 575 985.72 573.37 866.25 578.88 855 567 852.25 564.1 852.23 560.89 \ 855 558 857.7 555.18 1057.19 547.71 1170.87 543.68 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1170.82 546.13 1177.73 543.43 1170.64 541.23 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 923.5 560.6 0 137 33 -max_alt_allele_in_normal_fraction ", label=max_alt_allele_in_normal_fraction, lp="923.5,562.5", pos="e,1179.2,543.38 1067,583.5 1046.8,580.41 1023.4,577.14 1002,575 985.72,573.37 866.25,578.88 855,567 852.25,564.1 852.23,560.89 855,\ 558 857.7,555.18 1057.2,547.71 1170.9,543.68"]; varscan_strand_filter -> varscan [_draw_="c 7 -#000000 B 7 372.65 583.59 386.88 575.33 410.11 563.24 432 558 474.05 547.94 751.82 543.27 875.63 541.67 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 875.43 544.13 882.4 541.59 875.37 539.23 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 456.5 560.6 0 49 13 -strand_filter ", label=strand_filter, lp="456.5,562.5", pos="e,883.91,541.57 372.65,583.59 386.88,575.33 410.11,563.24 432,558 474.05,547.94 751.82,543.27 875.63,541.67"]; annotate_coding_only -> annotate_variants [_draw_="c 7 -#000000 B 16 2707.49 583.58 2718.39 580.75 2730.71 577.64 2742 575 2758.81 571.07 2766.68 577.97 2780 567 2789.68 559.02 2791 \ 553.55 2791 541 2791 541 2791 541 2791 449 2791 435.82 2801.14 425.73 2812.2 418.65 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2813.36 420.81 2818.19 415.18 2810.91 416.57 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2815.5 493.1 0 49 11 -coding_only ", label=coding_only, lp="2815.5,495", pos="e,2819.5,414.43 2707.5,583.58 2718.4,580.75 2730.7,577.64 2742,575 2758.8,571.07 2766.7,577.97 2780,567 2789.7,559.02 2791,553.55 \ 2791,541 2791,541 2791,541 2791,449 2791,435.82 2801.1,425.73 2812.2,418.65"]; readcount_minimum_base_quality -> tumor_bam_readcount [_draw_="c 7 -#000000 B 19 2558.85 583.5 2575.89 580.35 2595.82 577.04 2614 575 2622.79 574.01 2766.91 573.41 2773 567 2784.33 555.08 2783.79 \ 542.41 2773 530 2764.61 520.35 2727.59 527.4 2716 522 2707.87 518.21 2662.75 473.9 2656 468 2654.77 466.92 2653.48 465.81 2652.19 \ 464.69 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2653.88 462.91 2646.96 460.23 2650.69 466.64 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2751.5 515.6 0 71 16 -min_base_quality ", label=min_base_quality, lp="2751.5,517.5", pos="e,2645.8,459.25 2558.9,583.5 2575.9,580.35 2595.8,577.04 2614,575 2622.8,574.01 2766.9,573.41 2773,567 2784.3,555.08 2783.8,542.41 \ 2773,530 2764.6,520.35 2727.6,527.4 2716,522 2707.9,518.21 2662.8,473.9 2656,468 2654.8,466.92 2653.5,465.81 2652.2,464.69"]; readcount_minimum_base_quality -> normal_bam_readcount [_draw_="c 7 -#000000 B 10 2557.41 583.57 2574.75 580.31 2595.29 576.9 2614 575 2629.32 573.44 2880.27 578.04 2891 567 2904.46 553.14 2889.62 \ 495.78 2881.12 467.26 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2883.55 466.83 2879.16 460.86 2878.86 468.27 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2929.5 515.6 0 71 16 -min_base_quality ", label=min_base_quality, lp="2929.5,517.5", pos="e,2878.7,459.41 2557.4,583.57 2574.7,580.31 2595.3,576.9 2614,575 2629.3,573.44 2880.3,578.04 2891,567 2904.5,553.14 2889.6,495.78 \ 2881.1,467.26"]; varscan_p_value -> varscan [_draw_="c 7 -#000000 B 7 473.88 583.64 476.18 575.55 480.95 563.69 490 558 506.02 547.93 757.86 543.32 875.41 541.71 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 875.16 544.16 882.12 541.62 875.09 539.26 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 506 560.6 0 32 7 -p_value ", label=p_value, lp="506,562.5", pos="e,883.64,541.6 473.88,583.64 476.18,575.55 480.95,563.69 490,558 506.02,547.93 757.86,543.32 875.41,541.71"]; hgvs_annotation -> annotate_variants [_draw_="c 7 -#000000 B 13 3028.38 583.6 3068.84 570.57 3141.39 544.64 3156 522 3158.17 518.64 3157.41 516.74 3156 513 3137.24 463.19 3124.87 \ 446.27 3077 423 3063.7 416.53 2967.09 416.24 2932.55 414.9 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2932.9 412.47 2925.78 414.55 2932.65 417.36 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3162 493.1 0 20 4 -hgvs ", label=hgvs, lp="3162,495", pos="e,2924.3,414.47 3028.4,583.6 3068.8,570.57 3141.4,544.64 3156,522 3158.2,518.64 3157.4,516.74 3156,513 3137.2,463.19 3124.9,446.27 \ 3077,423 3063.7,416.53 2967.1,416.24 2932.5,414.9"]; docm_vcf -> docm [_draw_="c 7 -#000000 B 13 1705.79 583.63 1699.36 580.29 1691.53 576.81 1684 575 1670 571.63 1435.02 577.34 1425 567 1422.22 564.13 1422.25 \ 560.9 1425 558 1433.28 549.26 1579.39 544.49 1669.34 542.37 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1669.14 544.83 1676.09 542.21 1669.03 539.93 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1444.5 560.6 0 39 8 -docm_vcf ", label=docm_vcf, lp="1444.5,562.5", pos="e,1677.6,542.18 1705.8,583.63 1699.4,580.29 1691.5,576.81 1684,575 1670,571.63 1435,577.34 1425,567 1422.2,564.13 1422.2,560.9 1425,\ 558 1433.3,549.26 1579.4,544.49 1669.3,542.37"]; variants_to_table_fields -> variants_to_table [_draw_="c 7 -#000000 B 10 3965.09 583.51 3932.13 574.23 3887 558.36 3887 541 3887 541 3887 541 3887 134 3887 105.92 3815.18 93.24 3755.54 \ 87.55 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3755.92 85.12 3748.73 86.93 3755.48 90 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3898.5 335.6 0 23 6 -fields ", label=fields, lp="3898.5,337.5", pos="e,3747.2,86.794 3965.1,583.51 3932.1,574.23 3887,558.36 3887,541 3887,541 3887,541 3887,134 3887,105.92 3815.2,93.238 3755.5,87.551"]; cosmic_vcf -> mutect [_draw_="c 7 -#000000 B 13 1254.52 583.65 1247.54 580.31 1239.07 576.83 1231 575 1218.26 572.12 1005.08 576.39 996 567 993.22 564.12 993.27 \ 560.92 996 558 1007.83 545.34 1101.14 541.83 1170.78 541 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1170.67 543.45 1177.64 540.93 1170.61 538.55 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1018.5 560.6 0 45 10 -cosmic_vcf ", label=cosmic_vcf, lp="1018.5,562.5", pos="e,1179.2,540.91 1254.5,583.65 1247.5,580.31 1239.1,576.83 1231,575 1218.3,572.12 1005.1,576.39 996,567 993.22,564.12 993.27,560.92 \ 996,558 1007.8,545.34 1101.1,541.83 1170.8,541"]; custom_gnomad_vcf -> annotate_variants [_draw_="c 7 -#000000 B 13 3149.27 583.58 3164.82 579.17 3180.47 573.36 3185 567 3221.52 515.66 3174.03 475.54 3122 440 3108.38 430.69 3104.93 \ 427.29 3089 423 3057.18 414.43 2976.97 417.2 2932.63 414.99 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2932.92 412.55 2925.78 414.57 2932.62 417.44 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3232 493.1 0 84 17 -custom_gnomad_vcf ", label=custom_gnomad_vcf, lp="3232,495", pos="e,2924.3,414.48 3149.3,583.58 3164.8,579.17 3180.5,573.36 3185,567 3221.5,515.66 3174,475.54 3122,440 3108.4,430.69 3104.9,427.29 \ 3089,423 3057.2,414.43 2977,417.2 2932.6,414.99"]; add_vep_fields_to_table [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 3472.5 0.5 3472.5 19.5 3629.5 19.5 3629.5 0.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3551 7.5 0 141 28 -add VEP annotation to report ", height=0.27778, label="add VEP annotation to report", pos="3551,10", rects="3472.5,0.5,3629.5,19.5", width=2.1806]; vep_to_table_fields -> add_vep_fields_to_table [_draw_="c 7 -#000000 B 10 4297.41 583.5 4283.2 574.9 4265 560.15 4265 541 4265 541 4265 541 4265 81 4265 18.64 3828.02 11.01 3637.77 10.64 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3637.97 8.19 3630.97 10.63 3637.96 13.09 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4286 313.1 0 42 10 -vep_fields ", label=vep_fields, lp="4286,315", pos="e,3629.5,10.63 4297.4,583.5 4283.2,574.9 4265,560.15 4265,541 4265,541 4265,541 4265,81 4265,18.639 3828,11.009 3637.8,10.642"]; dbsnp_vcf -> mutect [_draw_="c 7 -#000000 B 10 1328.37 583.63 1321.75 580.29 1313.71 576.81 1306 575 1292.15 571.74 1059.9 577.22 1050 567 1031.35 547.76 1107.4 \ 542.28 1170.59 540.95 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1170.55 543.4 1177.5 540.82 1170.46 538.5 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1071 560.6 0 42 9 -dbsnp_vcf ", label=dbsnp_vcf, lp="1071,562.5", pos="e,1179,540.8 1328.4,583.63 1321.8,580.29 1313.7,576.81 1306,575 1292.1,571.74 1059.9,577.22 1050,567 1031.4,547.76 1107.4,542.28 \ 1170.6,540.95"]; mutect_artifact_detection_mode -> mutect [_draw_="c 7 -#000000 B 13 1429.7 583.56 1413.25 580.29 1393.77 576.89 1376 575 1360.8 573.38 1111.65 577.96 1101 567 1098.21 564.13 1098.34 \ 560.99 1101 558 1106.06 552.32 1137.92 548.26 1170.68 545.53 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1170.72 547.98 1177.51 544.99 1170.34 543.1 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1151 560.6 0 100 23 -artifact_detection_mode ", label=artifact_detection_mode, lp="1151,562.5", pos="e,1179,544.86 1429.7,583.56 1413.3,580.29 1393.8,576.89 1376,575 1360.8,573.38 1111.6,577.96 1101,567 1098.2,564.13 1098.3,560.99 \ 1101,558 1106.1,552.32 1137.9,548.26 1170.7,545.53"]; variants_to_table_genotype_fields -> variants_to_table [_draw_="c 7 -#000000 B 10 4118.26 583.53 4096.17 576.45 4074 563.69 4074 541 4074 541 4074 541 4074 134 4074 102.19 3870.9 89.79 3755.23 \ 85.31 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3755.66 82.88 3748.57 85.06 3755.48 87.77 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4107 335.6 0 66 15 -genotype_fields ", label=genotype_fields, lp="4107,337.5", pos="e,3747.1,85.004 4118.3,583.53 4096.2,576.45 4074,563.69 4074,541 4074,541 4074,541 4074,134 4074,102.19 3870.9,89.793 3755.2,85.313"]; interval_list -> strelka [_draw_="c 7 -#000000 B 13 1809.32 583.64 1816.66 580.3 1825.56 576.82 1834 575 1861.82 569.01 2063.35 576.98 2090 567 2095.92 564.78 2095.15 \ 560.39 2101 558 2123.48 548.79 2183.55 544.54 2229.2 542.59 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2229.13 545.05 2236.03 542.31 2228.93 540.15 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2124.5 560.6 0 47 13 -interval_list ", label=interval_list, lp="2124.5,562.5", pos="e,2237.5,542.25 1809.3,583.64 1816.7,580.3 1825.6,576.82 1834,575 1861.8,569.01 2063.4,576.98 2090,567 2095.9,564.78 2095.2,560.39 \ 2101,558 2123.5,548.79 2183.6,544.54 2229.2,542.59"]; interval_list -> docm [_draw_="c 7 -#000000 B 13 1776.69 583.63 1769.34 580.29 1760.44 576.81 1752 575 1736.84 571.75 1483.81 578.12 1473 567 1470.21 564.13 1470.26 \ 560.92 1473 558 1486.19 543.95 1594.84 540.98 1669.14 540.63 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1669.06 543.08 1676.05 540.6 1669.04 538.18 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1496.5 560.6 0 47 13 -interval_list ", label=interval_list, lp="1496.5,562.5", pos="e,1677.6,540.6 1776.7,583.63 1769.3,580.29 1760.4,576.81 1752,575 1736.8,571.75 1483.8,578.12 1473,567 1470.2,564.13 1470.3,560.92 \ 1473,558 1486.2,543.95 1594.8,540.98 1669.1,540.63"]; interval_list -> mutect [_draw_="c 7 -#000000 B 13 1776.69 583.6 1769.35 580.25 1760.45 576.77 1752 575 1669.78 557.72 1455.32 588.11 1374 567 1365.73 564.85 1365.11 \ 560.7 1357 558 1346.86 554.63 1335.97 551.92 1325.13 549.75 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1325.68 547.36 1318.35 548.47 1324.77 552.17 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1397.5 560.6 0 47 13 -interval_list ", label=interval_list, lp="1397.5,562.5", pos="e,1316.9,548.19 1776.7,583.6 1769.3,580.25 1760.4,576.77 1752,575 1669.8,557.72 1455.3,588.11 1374,567 1365.7,564.85 1365.1,560.7 \ 1357,558 1346.9,554.63 1336,551.92 1325.1,549.75"]; interval_list -> pindel [_draw_="c 7 -#000000 B 13 1776.27 583.54 1769 580.27 1760.27 576.86 1752 575 1717.55 567.23 1569.51 583.44 1594 558 1602.06 549.63 1791.39 \ 550.47 1803 550 1847.38 548.2 1897.06 546.06 1936.84 544.32 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1936.78 546.78 1943.66 544.03 1936.56 541.88 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1617.5 560.6 0 47 13 -interval_list ", label=interval_list, lp="1617.5,562.5", pos="e,1945.2,543.96 1776.3,583.54 1769,580.27 1760.3,576.86 1752,575 1717.6,567.23 1569.5,583.44 1594,558 1602.1,549.63 1791.4,550.47 \ 1803,550 1847.4,548.2 1897.1,546.06 1936.8,544.32"]; interval_list -> varscan [_draw_="c 7 -#000000 B 13 1776.7 583.55 1769.36 580.19 1760.46 576.72 1752 575 1739.1 572.37 813.27 576.35 804 567 801.18 564.16 801.36 \ 561 804 558 813.55 547.13 845.49 542.85 875.44 541.3 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 875.42 543.75 882.31 541 875.2 538.86 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 827.5 560.6 0 47 13 -interval_list ", label=interval_list, lp="827.5,562.5", pos="e,883.82,540.93 1776.7,583.55 1769.4,580.19 1760.5,576.72 1752,575 1739.1,572.37 813.27,576.35 804,567 801.18,564.16 801.36,561 \ 804,558 813.55,547.13 845.49,542.85 875.44,541.3"]; strelka -> strelka_filtered_vcf [_draw_="c 7 -#000000 B 10 2286 530.76 2286 522.1 2286 508.09 2286 496 2286 496 2286 496 2286 134 2286 122.59 2286 109.75 2286 99.81 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2288.45 99.82 2286 92.82 2283.55 99.82 ", pos="e,2286,91.304 2286,530.76 2286,522.1 2286,508.09 2286,496 2286,496 2286,496 2286,134 2286,122.59 2286,109.75 2286,99.808"]; strelka -> strelka_unfiltered_vcf [_draw_="c 7 -#000000 B 10 2237.65 537.27 2209.7 533.38 2180 522.91 2180 496 2180 496 2180 496 2180 134 2180 122.07 2176.39 109.11 2172.84 \ 99.24 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2175.19 98.52 2170.37 92.88 2170.62 100.29 ", pos="e,2169.8,91.468 2237.7,537.27 2209.7,533.38 2180,522.91 2180,496 2180,496 2180,496 2180,134 2180,122.07 2176.4,109.11 2172.8,99.242"]; strelka -> combine [_draw_="c 7 -#000000 B 4 2319.19 530.5 2346 523.64 2383.86 513.95 2412.64 506.59 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2413.24 508.96 2419.41 504.85 2412.02 504.22 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2407 515.6 0 44 11 -strelka_vcf ", label=strelka_vcf, lp="2407,517.5", pos="e,2420.9,504.48 2319.2,530.5 2346,523.64 2383.9,513.95 2412.6,506.59"]; add_normal_bam_readcount_to_vcf [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2865 305.5 2865 324.5 3031 324.5 3031 305.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2948 312.5 0 150 29 -add bam_readcount info to vcf ", height=0.27778, label="add bam_readcount info to vcf", pos="2948,315", rects="2865,305.5,3031,324.5", width=2.3056]; index [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2917 260.5 2917 279.5 2979 279.5 2979 260.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2948 267.5 0 46 9 -vcf index ", height=0.27778, label="vcf index", pos="2948,270", rects="2917,260.5,2979,279.5", width=0.86111]; add_normal_bam_readcount_to_vcf -> index [_draw_="c 7 -#000000 B 4 2948 305.71 2948 300.59 2948 293.85 2948 287.67 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2950.45 287.78 2948 280.78 2945.55 287.78 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2954.5 290.6 0 13 3 -vcf ", label=vcf, lp="2954.5,292.5", pos="e,2948,279.27 2948,305.71 2948,300.59 2948,293.85 2948,287.67"]; tumor_cram_to_bam -> filter_vcf [_draw_="c 7 -#000000 B 10 2536.09 530.59 2550.37 523.73 2566 512.47 2566 496 2566 496 2566 496 2566 269 2566 229.95 3142.5 226.04 3348.73 \ 225.89 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3348.57 228.34 3355.57 225.88 3348.57 223.44 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2589 380.6 0 46 9 -tumor_bam ", label=tumor_bam, lp="2589,382.5", pos="e,3357.1,225.88 2536.1,530.59 2550.4,523.73 2566,512.47 2566,496 2566,496 2566,496 2566,269 2566,229.95 3142.5,226.04 3348.7,225.89"]; tumor_cram_to_bam -> tumor_bam_readcount [_draw_="c 7 -#000000 B 10 2553.9 530.61 2559.62 528.38 2565.18 525.56 2570 522 2593.2 504.86 2584.88 487.64 2606 468 2607.53 466.57 2609.21 \ 465.22 2610.96 463.94 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2612.11 466.11 2616.66 460.25 2609.45 462 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2602.5 493.1 0 19 3 -bam ", label=bam, lp="2602.5,495", pos="e,2617.9,459.43 2553.9,530.61 2559.6,528.38 2565.2,525.56 2570,522 2593.2,504.86 2584.9,487.64 2606,468 2607.5,466.57 2609.2,465.22 \ 2611,463.94"]; combine -> tumor_bam_readcount [_draw_="c 7 -#000000 B 4 2489.96 485.5 2519.25 478.58 2560.72 468.79 2591.99 461.4 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2592.4 463.82 2598.64 459.83 2591.27 459.05 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2567.5 470.6 0 13 3 -vcf ", label=vcf, lp="2567.5,472.5", pos="e,2600.1,459.48 2490,485.5 2519.2,478.58 2560.7,468.79 2592,461.4"]; combine -> normal_bam_readcount [_draw_="c 7 -#000000 B 10 2521.36 485.53 2538.87 483.06 2557.68 480.16 2575 477 2592.93 473.73 2596.96 470.6 2615 468 2651.8 462.7 2748.3 \ 457.22 2813.08 453.97 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2812.83 456.43 2819.7 453.64 2812.59 451.54 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2621.5 470.6 0 13 3 -vcf ", label=vcf, lp="2621.5,472.5", pos="e,2821.2,453.56 2521.4,485.53 2538.9,483.06 2557.7,480.16 2575,477 2592.9,473.73 2597,470.6 2615,468 2651.8,462.7 2748.3,457.22 \ 2813.1,453.97"]; decompose [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2420 440.5 2420 459.5 2524 459.5 2524 440.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2472 447.5 0 88 16 -run vt decompose ", height=0.27778, label="run vt decompose", pos="2472,450", rects="2420,440.5,2524,459.5", width=1.4444]; combine -> decompose [_draw_="c 7 -#000000 B 7 2454.14 485.95 2454.49 480.65 2455.46 473.67 2458 468 2458.26 467.42 2458.54 466.85 2458.84 466.29 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2460.78 467.79 2462.74 460.63 2456.75 465 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2464.5 470.6 0 13 3 -vcf ", label=vcf, lp="2464.5,472.5", pos="e,2463.6,459.39 2454.1,485.95 2454.5,480.65 2455.5,473.67 2458,468 2458.3,467.42 2458.5,466.85 2458.8,466.29"]; docm -> docm_filtered_vcf [_draw_="c 7 -#000000 B 10 1732.78 530.59 1727.24 522.25 1720 508.9 1720 496 1720 496 1720 496 1720 134 1720 120.85 1713.06 107.68 1706.35 \ 98.01 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1708.44 96.72 1702.29 92.57 1704.51 99.65 ", pos="e,1701.4,91.361 1732.8,530.59 1727.2,522.25 1720,508.9 1720,496 1720,496 1720,496 1720,134 1720,120.85 1713.1,107.68 1706.3,98.01"]; docm -> docm_unfiltered_vcf [_draw_="c 7 -#000000 B 10 1744.89 530.54 1750.14 522.17 1757 508.79 1757 496 1757 496 1757 496 1757 134 1757 117.62 1770.31 104.67 1783.33 \ 95.91 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1784.51 98.06 1789.16 92.29 1781.93 93.9 ", pos="e,1790.4,91.488 1744.9,530.54 1750.1,522.17 1757,508.79 1757,496 1757,496 1757,496 1757,134 1757,117.62 1770.3,104.67 1783.3,95.915"]; docm -> combine [_draw_="c 7 -#000000 B 7 1800.13 535.24 1915.59 528.15 2155.05 513.45 2164 513 2254.21 508.51 2278.92 511.72 2371.19 505.1 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2371.12 507.56 2377.92 504.6 2370.76 502.67 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2183.5 515.6 0 39 8 -docm_vcf ", label=docm_vcf, lp="2183.5,517.5", pos="e,2379.4,504.49 1800.1,535.24 1915.6,528.15 2155,513.45 2164,513 2254.2,508.51 2278.9,511.72 2371.2,505.1"]; annotated_filter_bgzip [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 3440.5 170.5 3440.5 189.5 3505.5 189.5 3505.5 170.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3473 177.5 0 49 9 -bgzip VCF ", height=0.27778, label="bgzip VCF", pos="3473,180", rects="3440.5,170.5,3505.5,189.5", width=0.90278]; filter_vcf -> annotated_filter_bgzip [_draw_="c 7 -#000000 B 4 3431.27 215.5 3438.4 209.62 3448.04 201.64 3456.26 194.84 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3457.75 196.79 3461.58 190.44 3454.63 193.02 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3457.5 200.6 0 13 4 -file ", label=file, lp="3457.5,202.5", pos="e,3462.7,189.48 3431.3,215.5 3438.4,209.62 3448,201.64 3456.3,194.84"]; add_tumor_bam_readcount_to_vcf [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2817 350.5 2817 369.5 2983 369.5 2983 350.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2900 357.5 0 150 29 -add bam_readcount info to vcf ", height=0.27778, label="add bam_readcount info to vcf", pos="2900,360", rects="2817,350.5,2983,369.5", width=2.3056]; add_tumor_bam_readcount_to_vcf -> add_normal_bam_readcount_to_vcf [_draw_="c 7 -#000000 B 4 2909.25 350.71 2915.9 344.76 2924.99 336.61 2932.71 329.7 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2934.07 331.77 2937.65 325.28 2930.8 328.12 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2934.5 335.6 0 13 3 -vcf ", label=vcf, lp="2934.5,337.5", pos="e,2938.8,324.27 2909.3,350.71 2915.9,344.76 2925,336.61 2932.7,329.7"]; tumor_bam_readcount -> tumor_bam_readcount_tsv [_draw_="c 7 -#000000 B 10 2581.35 444.15 2536.73 438.62 2481 427.43 2481 406 2481 406 2481 406 2481 134 2481 116.15 2465.49 103.4 2449.98 \ 95.11 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2451.16 92.96 2443.8 92.07 2449 97.36 ", pos="e,2442.4,91.397 2581.4,444.15 2536.7,438.62 2481,427.43 2481,406 2481,406 2481,406 2481,134 2481,116.15 2465.5,103.4 2450,95.111"]; tumor_bam_readcount -> add_tumor_bam_readcount_to_vcf [_draw_="c 7 -#000000 B 7 2638.94 440.83 2643.79 428.65 2654.68 405.99 2672 395 2684.12 387.31 2754.3 377.56 2813.63 370.47 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2813.76 372.92 2820.42 369.67 2813.18 368.06 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2712 403.1 0 80 17 -bam_readcount_tsv ", label=bam_readcount_tsv, lp="2712,405", pos="e,2821.9,369.49 2638.9,440.83 2643.8,428.65 2654.7,405.99 2672,395 2684.1,387.31 2754.3,377.56 2813.6,370.47"]; annotated_filter_index [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 3468 125.5 3468 144.5 3530 144.5 3530 125.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3499 132.5 0 46 9 -vcf index ", height=0.27778, label="vcf index", pos="3499,135", rects="3468,125.5,3530,144.5", width=0.86111]; annotated_filter_bgzip -> annotated_filter_index [_draw_="c 7 -#000000 B 4 3478.01 170.71 3481.32 165.24 3485.76 157.9 3489.7 151.38 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3491.69 152.82 3493.22 145.56 3487.5 150.28 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3494.5 155.6 0 13 3 -vcf ", label=vcf, lp="3494.5,157.5", pos="e,3494,144.27 3478,170.71 3481.3,165.24 3485.8,157.9 3489.7,151.38"]; index -> final_vcf [_draw_="c 7 -#000000 B 10 2922.17 260.63 2907.09 253.94 2891 242.86 2891 226 2891 226 2891 226 2891 134 2891 123.78 2870.37 107.4 2853.94 \ 95.97 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2855.64 94.16 2848.47 92.26 2852.89 98.22 ", pos="e,2847.2,91.405 2922.2,260.63 2907.1,253.94 2891,242.86 2891,226 2891,226 2891,226 2891,134 2891,123.78 2870.4,107.4 2853.9,95.968"]; index -> filter_vcf [_draw_="c 7 -#000000 B 7 2978.75 264.96 3021.87 259.41 3102.8 249.37 3172 243 3231.45 237.52 3299.03 233.02 3348.77 230.02 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3348.87 232.47 3355.71 229.61 3348.58 227.58 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3178.5 245.6 0 13 3 -vcf ", label=vcf, lp="3178.5,247.5", pos="e,3357.2,229.52 2978.8,264.96 3021.9,259.41 3102.8,249.37 3172,243 3231.4,237.52 3299,233.02 3348.8,230.02"]; annotated_filter_index -> final_filtered_vcf [_draw_="c 7 -#000000 B 4 3468.07 131.29 3374.73 123.13 3094.89 98.65 2973.37 88.02 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2973.6 85.58 2966.41 87.41 2973.17 90.46 ", pos="e,2964.9,87.278 3468.1,131.29 3374.7,123.13 3094.9,98.649 2973.4,88.019"]; annotated_filter_index -> variants_to_table [_draw_="c 7 -#000000 B 4 3528.39 125.58 3558.8 116.87 3606.38 103.23 3639.48 93.75 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3640.05 96.13 3646.11 91.85 3638.7 91.42 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3594.5 110.6 0 13 3 -vcf ", label=vcf, lp="3594.5,112.5", pos="e,3647.6,91.434 3528.4,125.58 3558.8,116.87 3606.4,103.23 3639.5,93.75"]; annotated_filter_index -> add_vep_fields_to_table [_draw_="c 7 -#000000 B 4 3502.57 125.55 3511.19 105.17 3533.2 53.1 3544.34 26.76 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3546.48 27.99 3546.95 20.58 3541.97 26.08 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3541.5 80.1 0 13 3 -vcf ", label=vcf, lp="3541.5,82", pos="e,3547.5,19.19 3502.6,125.55 3511.2,105.17 3533.2,53.102 3544.3,26.764"]; annotate_variants -> vep_summary [_draw_="c 7 -#000000 B 10 2791.35 395.58 2773.7 389.48 2758 379 2758 361 2758 361 2758 361 2758 134 2758 122.59 2758 109.75 2758 99.81 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2760.45 99.82 2758 92.82 2755.55 99.82 ", pos="e,2758,91.304 2791.4,395.58 2773.7,389.48 2758,379 2758,361 2758,361 2758,361 2758,134 2758,122.59 2758,109.75 2758,99.808"]; annotate_variants -> add_tumor_bam_readcount_to_vcf [_draw_="c 7 -#000000 B 4 2851.85 395.5 2860.24 389.5 2871.65 381.32 2881.25 374.43 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2882.68 376.43 2886.94 370.36 2879.82 372.45 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2881.5 380.6 0 13 3 -vcf ", label=vcf, lp="2881.5,382.5", pos="e,2888.2,369.48 2851.9,395.5 2860.2,389.5 2871.6,381.32 2881.3,374.43"]; normal_bam_readcount -> normal_bam_readcount_tsv [_draw_="c 7 -#000000 B 13 2821.18 446.2 2752.33 442.55 2640.86 436.14 2622 432 2590.4 425.06 2554 438.36 2554 406 2554 406 2554 406 2554 \ 134 2554 114.19 2571.56 101.78 2590.32 94.16 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2590.69 96.64 2596.4 91.9 2588.99 92.04 ", pos="e,2597.8,91.375 2821.2,446.2 2752.3,442.55 2640.9,436.14 2622,432 2590.4,425.06 2554,438.36 2554,406 2554,406 2554,406 2554,134 \ 2554,114.19 2571.6,101.78 2590.3,94.16"]; normal_bam_readcount -> add_normal_bam_readcount_to_vcf [_draw_="c 7 -#000000 B 10 2930.63 444.77 2974.39 440.22 3031.01 431.32 3047 415 3072.52 388.95 3077.3 357.18 3050 333 3047.27 330.59 3042.85 \ 328.51 3037.34 326.73 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3038.06 324.38 3030.66 324.87 3036.75 329.1 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3107 380.6 0 80 17 -bam_readcount_tsv ", label=bam_readcount_tsv, lp="3107,382.5", pos="e,3029.2,324.47 2930.6,444.77 2974.4,440.22 3031,431.32 3047,415 3072.5,388.95 3077.3,357.18 3050,333 3047.3,330.59 3042.9,328.51 \ 3037.3,326.73"]; variants_to_table -> add_vep_fields_to_table [_draw_="c 7 -#000000 B 4 3662.05 72.7 3640.07 60.49 3598.89 37.61 3573.32 23.4 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3574.56 21.29 3567.25 20.03 3572.18 25.57 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3601.5 30.6 0 13 3 -tsv ", label=tsv, lp="3601.5,32.5", pos="e,3565.9,19.294 3662.1,72.695 3640.1,60.486 3598.9,37.607 3573.3,23.402"]; mutect -> mutect_filtered_vcf [_draw_="c 7 -#000000 B 13 1316.91 538.39 1386.35 537.14 1485.18 533.35 1499 522 1508.25 514.4 1506 507.97 1506 496 1506 496 1506 496 1506 \ 134 1506 114.67 1523.15 102.2 1541.16 94.43 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1541.87 96.79 1547.48 91.94 1540.07 92.23 ", pos="e,1548.9,91.381 1316.9,538.39 1386.3,537.14 1485.2,533.35 1499,522 1508.2,514.4 1506,507.97 1506,496 1506,496 1506,496 1506,134 \ 1506,114.67 1523.2,102.2 1541.2,94.429"]; mutect -> mutect_unfiltered_vcf [_draw_="c 7 -#000000 B 10 1264.12 530.74 1275.96 523.4 1290 511.44 1290 496 1290 496 1290 496 1290 134 1290 130.58 1371.44 107.59 1421.91 \ 93.67 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1422.47 96.06 1428.57 91.84 1421.17 91.33 ", pos="e,1430,91.437 1264.1,530.74 1276,523.4 1290,511.44 1290,496 1290,496 1290,496 1290,134 1290,130.58 1371.4,107.59 1421.9,93.673"]; mutect -> combine [_draw_="c 7 -#000000 B 7 1316.9 536.18 1445.99 530.97 1733.08 519.76 1975 513 2149.18 508.14 2195.07 516.3 2372.05 505.01 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2371.96 507.47 2378.79 504.57 2371.65 502.58 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1997.5 515.6 0 45 10 -mutect_vcf ", label=mutect_vcf, lp="1997.5,517.5", pos="e,2380.3,504.48 1316.9,536.18 1446,530.97 1733.1,519.76 1975,513 2149.2,508.14 2195.1,516.3 2372,505.01"]; normal_cram_to_bam -> normal_bam_readcount [_draw_="c 7 -#000000 B 7 2638.34 530.91 2633.16 525.58 2628.65 518.6 2633 513 2654.93 484.77 2748.73 467.24 2813.16 458.31 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2813.15 460.78 2819.76 457.41 2812.49 455.92 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2692.5 493.1 0 19 3 -bam ", label=bam, lp="2692.5,495", pos="e,2821.3,457.21 2638.3,530.91 2633.2,525.58 2628.7,518.6 2633,513 2654.9,484.77 2748.7,467.24 2813.2,458.31"]; add_vep_fields_to_table -> final_tsv [_draw_="c 7 -#000000 B 7 3472.84 12.03 3245.88 15.24 2600.23 26.01 2559 45 2549.33 49.45 2541.21 58.2 2535.44 65.95 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2533.64 64.25 2531.69 71.4 2537.68 67.03 ", pos="e,2530.8,72.647 3472.8,12.031 3245.9,15.244 2600.2,26.011 2559,45 2549.3,49.453 2541.2,58.198 2535.4,65.954"]; decompose -> annotate_variants [_draw_="c 7 -#000000 B 4 2523.94 442.93 2585.18 435.77 2687.67 423.8 2759.28 415.43 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2759.25 417.9 2765.91 414.66 2758.68 413.04 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2694.5 425.6 0 13 3 -vcf ", label=vcf, lp="2694.5,427.5", pos="e,2767.4,414.48 2523.9,442.93 2585.2,435.77 2687.7,423.8 2759.3,415.43"]; pindel -> pindel_unfiltered_vcf [_draw_="c 7 -#000000 B 10 2019.53 530.8 2026.24 522.62 2035 509.38 2035 496 2035 496 2035 496 2035 134 2035 122.4 2036.55 109.41 2038.08 \ 99.44 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2040.46 100.07 2039.18 92.76 2035.62 99.27 ", pos="e,2039.4,91.268 2019.5,530.8 2026.2,522.62 2035,509.38 2035,496 2035,496 2035,496 2035,134 2035,122.4 2036.6,109.41 2038.1,99.444"]; pindel -> pindel_filtered_vcf [_draw_="c 7 -#000000 B 13 1950.25 530.57 1945.77 528.29 1941.61 525.48 1938 522 1929.38 513.7 1931 507.97 1931 496 1931 496 1931 496 1931 \ 134 1931 122.37 1929.19 109.38 1927.41 99.42 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1929.85 99.15 1926.13 92.74 1925.04 100.08 ", pos="e,1925.8,91.256 1950.3,530.57 1945.8,528.29 1941.6,525.48 1938,522 1929.4,513.7 1931,507.97 1931,496 1931,496 1931,496 1931,134 \ 1931,122.37 1929.2,109.38 1927.4,99.423"]; pindel -> combine [_draw_="c 7 -#000000 B 4 2078.9 533.04 2149.55 526.66 2264.44 516.08 2369.9 505.31 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2369.9 507.77 2376.61 504.62 2369.4 502.9 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2304 515.6 0 42 10 -pindel_vcf ", label=pindel_vcf, lp="2304,517.5", pos="e,2378.1,504.47 2078.9,533.04 2149.6,526.66 2264.4,516.08 2369.9,505.31"]; varscan -> varscan_unfiltered_vcf [_draw_="c 7 -#000000 B 10 986.39 535.51 1061.39 529.71 1192 516.64 1192 496 1192 496 1192 496 1192 134 1192 123.33 1250.16 105.23 1291.51 \ 93.71 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1291.97 96.12 1298.07 91.9 1290.67 91.4 ", pos="e,1299.5,91.494 986.39,535.51 1061.4,529.71 1192,516.64 1192,496 1192,496 1192,496 1192,134 1192,123.33 1250.2,105.23 1291.5,93.706"]; varscan -> varscan_filtered_vcf [_draw_="c 7 -#000000 B 10 986.15 537.3 1042.12 534.01 1124 524.35 1124 496 1124 496 1124 496 1124 134 1124 114.23 1141.31 101.88 1160.11 \ 94.3 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1160.78 96.66 1166.51 91.95 1159.09 92.06 ", pos="e,1167.9,91.429 986.15,537.3 1042.1,534.01 1124,524.35 1124,496 1124,496 1124,496 1124,134 1124,114.23 1141.3,101.88 1160.1,94.298"]; varscan -> combine [_draw_="c 7 -#000000 B 10 986.46 537.07 1035.45 535.24 1111.25 532.42 1177 530 1385 522.35 1436.92 517.92 1645 513 1804.14 509.24 2198.53 \ 514.65 2372.37 504.96 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2372.38 507.41 2379.23 504.56 2372.09 502.52 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1669.5 515.6 0 49 11 -varscan_vcf ", label=varscan_vcf, lp="1669.5,517.5", pos="e,2380.7,504.47 986.46,537.07 1035.4,535.24 1111.2,532.42 1177,530 1385,522.35 1436.9,517.92 1645,513 1804.1,509.24 2198.5,514.65 \ 2372.4,504.96"]; default1 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 2987 350.5 2987 369.5 3055 369.5 3055 350.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3021 357.5 0 52 8 -\"NORMAL\" ", fillcolor="#D5AEFC", height=0.27778, label="\"NORMAL\"", pos="3021,360", rects="2987,350.5,3055,369.5", width=0.94444]; default1 -> add_normal_bam_readcount_to_vcf [_draw_="c 7 -#000000 B 4 3006.58 350.5 2995.98 344.26 2981.4 335.68 2969.44 328.63 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2970.97 326.69 2963.7 325.25 2968.48 330.91 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3020 335.6 0 58 11 -sample_name ", label=sample_name, lp="3020,337.5", pos="e,2962.4,324.48 3006.6,350.5 2996,344.26 2981.4,335.68 2969.4,328.63"]; default2 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 2765.5 350.5 2765.5 369.5 2812.5 369.5 2812.5 350.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2789 357.5 0 31 5 -\"DNA\" ", fillcolor="#D5AEFC", height=0.27778, label="\"DNA\"", pos="2789,360", rects="2765.5,350.5,2812.5,369.5", width=0.65278]; default2 -> add_normal_bam_readcount_to_vcf [_draw_="c 7 -#000000 B 10 2812.2 351.47 2813.83 350.97 2815.44 350.47 2817 350 2843.53 341.98 2850.18 340.01 2877 333 2885.46 330.79 2894.51 \ 328.54 2903.22 326.43 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2903.74 328.82 2909.97 324.8 2902.59 324.06 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2897.5 335.6 0 41 9 -data_type ", label=data_type, lp="2897.5,337.5", pos="e,2911.4,324.45 2812.2,351.47 2813.8,350.97 2815.4,350.47 2817,350 2843.5,341.98 2850.2,340.01 2877,333 2885.5,330.79 2894.5,328.54 \ 2903.2,326.43"]; default3 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 2931 395.5 2931 414.5 2993 414.5 2993 395.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2962 402.5 0 46 7 -\"TUMOR\" ", fillcolor="#D5AEFC", height=0.27778, label="\"TUMOR\"", pos="2962,405", rects="2931,395.5,2993,414.5", width=0.86111]; default3 -> add_tumor_bam_readcount_to_vcf [_draw_="c 7 -#000000 B 4 2949.75 395.5 2941 389.44 2929.07 381.16 2919.08 374.23 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2920.62 372.32 2913.47 370.34 2917.82 376.34 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2965 380.6 0 58 11 -sample_name ", label=sample_name, lp="2965,382.5", pos="e,2912.2,369.48 2949.8,395.5 2941,389.44 2929.1,381.16 2919.1,374.23"]; default4 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 2997.5 395.5 2997.5 414.5 3044.5 414.5 3044.5 395.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3021 402.5 0 31 5 -\"DNA\" ", fillcolor="#D5AEFC", height=0.27778, label="\"DNA\"", pos="3021,405", rects="2997.5,395.5,3044.5,414.5", width=0.65278]; default4 -> add_tumor_bam_readcount_to_vcf [_draw_="c 7 -#000000 B 7 3014.9 395.62 3010.16 389.74 3003.04 382.2 2995 378 2990.72 375.76 2986.2 373.82 2981.54 372.12 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2982.46 369.84 2975.04 369.97 2980.92 374.49 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3027.5 380.6 0 41 9 -data_type ", label=data_type, lp="3027.5,382.5", pos="e,2973.6,369.5 3014.9,395.62 3010.2,389.74 3003,382.2 2995,378 2990.7,375.76 2986.2,373.82 2981.5,372.12"]; default5 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 2310 485.5 2310 504.5 2372 504.5 2372 485.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2341 492.5 0 46 7 -\"TUMOR\" ", fillcolor="#D5AEFC", height=0.27778, label="\"TUMOR\"", pos="2341,495", rects="2310,485.5,2372,504.5", width=0.86111]; default5 -> tumor_bam_readcount [_draw_="c 7 -#000000 B 13 2371.86 485.77 2373.25 485.49 2374.64 485.23 2376 485 2416.46 478.09 2427.77 485.11 2468 477 2480.81 474.42 2483.23 \ 470.8 2496 468 2520.82 462.56 2548.52 458.73 2572.68 456.11 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2572.86 458.56 2579.57 455.39 2572.35 453.68 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2511.5 470.6 0 31 6 -sample ", label=sample, lp="2511.5,472.5", pos="e,2581.1,455.23 2371.9,485.77 2373.3,485.49 2374.6,485.23 2376,485 2416.5,478.09 2427.8,485.11 2468,477 2480.8,474.42 2483.2,470.8 \ 2496,468 2520.8,462.56 2548.5,458.73 2572.7,456.11"]; default6 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 2997 485.5 2997 504.5 3065 504.5 3065 485.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3031 492.5 0 52 8 -\"NORMAL\" ", fillcolor="#D5AEFC", height=0.27778, label="\"NORMAL\"", pos="3031,495", rects="2997,485.5,3065,504.5", width=0.94444]; default6 -> normal_bam_readcount [_draw_="c 7 -#000000 B 7 3021.69 485.57 3014.61 479.66 3004.36 472.11 2994 468 2976.82 461.18 2957.26 457.05 2939.08 454.56 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2939.58 452.16 2932.33 453.72 2938.98 457.02 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3025.5 470.6 0 31 6 -sample ", label=sample, lp="3025.5,472.5", pos="e,2930.8,453.53 3021.7,485.57 3014.6,479.66 3004.4,472.11 2994,468 2976.8,461.18 2957.3,457.05 2939.1,454.56"]; }