digraph workflow {
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		bb="0,0,1325,368",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
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	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
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	subgraph cluster_inputs {
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			lp="113,350.5",
			lwidth=1.17,
			rank=same,
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			pos="862,323",
			rects="777,313.5,947,332.5",
			width=2.3611];
		reference_sizes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 71.5 313.5 71.5 332.5 164.5 332.5 164.5 313.5 ",
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			fillcolor="#94DDF4",
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			rects="71.5,313.5,164.5,332.5",
			width=1.2917];
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			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 994 320.5 0 70 11 -sample_name ",
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			fillcolor="#94DDF4",
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			label=trimming_max_uncalled,
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			rects="168.5,313.5,303.5,332.5",
			width=1.875];
		reference_index	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 307.5 313.5 307.5 332.5 402.5 332.5 402.5 313.5 ",
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			fillcolor="#94DDF4",
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			rects="307.5,313.5,402.5,332.5",
			width=1.3194];
		instrument_data_bams	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 553.5 313.5 553.5 332.5 682.5 332.5 682.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 618 320.5 0 113 20 -instrument_data_bams ",
			fillcolor="#94DDF4",
			height=0.27778,
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			rects="553.5,313.5,682.5,332.5",
			width=1.7917];
		trimming_adapter_trim_end	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1041.5 313.5 1041.5 332.5 1194.5 332.5 1194.5 313.5 ",
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			fillcolor="#94DDF4",
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			pos="1118,323",
			rects="1041.5,313.5,1194.5,332.5",
			width=2.125];
		trimming_adapters	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1199 313.5 1199 332.5 1309 332.5 1309 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1254 320.5 0 94 17 -trimming_adapters ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_adapters,
			pos="1254,323",
			rects="1199,313.5,1309,332.5",
			width=1.5278];
		trimming_min_readlength	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 406.5 313.5 406.5 332.5 549.5 332.5 549.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 478 320.5 0 127 23 -trimming_min_readlength ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_min_readlength,
			pos="478,323",
			rects="406.5,313.5,549.5,332.5",
			width=1.9861];
		read_group_id	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 687 313.5 687 332.5 773 332.5 773 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 730 320.5 0 70 13 -read_group_id ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=read_group_id,
			pos="730,323",
			rects="687,313.5,773,332.5",
			width=1.1944];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 66 8 66 63 293 63 293 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 120 15 0 92 16 -Workflow Outputs ",
			bb="66,8,293,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="120,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		cram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 243.5 35.5 243.5 54.5 284.5 54.5 284.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 264 42.5 0 25 4 -cram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cram,
			pos="264,45",
			rects="243.5,35.5,284.5,54.5",
			width=0.56944];
		cpgs	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 200.5 35.5 200.5 54.5 239.5 54.5 239.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 220 42.5 0 23 4 -cpgs ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cpgs,
			pos="220,45",
			rects="200.5,35.5,239.5,54.5",
			width=0.54167];
		vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 164 35.5 164 54.5 196 54.5 196 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 180 42.5 0 16 3 -vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=vcf,
			pos="180,45",
			rects="164,35.5,196,54.5",
			width=0.44444];
		cpg_bedgraph	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 74.5 35.5 74.5 54.5 159.5 54.5 159.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 117 42.5 0 69 12 -cpg_bedgraph ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cpg_bedgraph,
			pos="117,45",
			rects="74.5,35.5,159.5,54.5",
			width=1.1806];
	}
	bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 496.5 260.5 496.5 279.5 739.5 279.5 739.5 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 618 267.5 0 227 44 -bam to trimmed fastqs and biscuit alignments ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="bam to trimmed fastqs and biscuit alignments",
		pos="618,270",
		rects="496.5,260.5,739.5,279.5",
		width=3.375];
	trimming_adapter_min_overlap -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 833.52 313.52 807.53 306.01 767.94 295.16 733 288 719.9 285.31 705.88 282.88 692.29 280.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 692.69 278.33 685.4 279.69 691.94 283.17 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 815 290.6 0 86 19 -adapter_min_overlap ",
		label=adapter_min_overlap,
		lp="815,292.5",
		pos="e,683.9,279.46 833.52,313.52 807.53,306.01 767.94,295.16 733,288 719.9,285.31 705.88,282.88 692.29,280.75"];
	bedgraph_to_bigwig	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 0 80.5 0 99.5 168 99.5 168 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 84 87.5 0 152 29 -bedGraph to bigwig conversion ",
		height=0.27778,
		label="bedGraph to bigwig conversion",
		pos="84,90",
		rects="0,80.5,168,99.5",
		width=2.3333];
	reference_sizes -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 10 112.26 313.77 106.04 304.02 97 287.09 97 271 97 271 97 271 97 134 97 124.84 94.26 115.03 91.3 107.09 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 93.61 106.28 88.69 100.74 89.08 108.15 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 129.5 200.6 0 65 15 -reference_sizes ",
		label=reference_sizes,
		lp="129.5,202.5",
		pos="e,88.113,99.341 112.26,313.77 106.04,304.02 97,287.09 97,271 97,271 97,271 97,134 97,124.84 94.261,115.03 91.298,107.09"];
	trimming_max_uncalled -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 264.04 313.52 291.53 305.57 334.75 294.03 373 288 410.2 282.14 450.89 278.3 488.24 275.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 488.32 278.23 495.14 275.33 488 273.34 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 401.5 290.6 0 57 12 -max_uncalled ",
		label=max_uncalled,
		lp="401.5,292.5",
		pos="e,496.65,275.23 264.04,313.52 291.53,305.57 334.75,294.03 373,288 410.2,282.14 450.89,278.3 488.24,275.78"];
	pileup	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 318.5 170.5 318.5 189.5 401.5 189.5 401.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 360 177.5 0 67 14 -Biscuit pileup ",
		height=0.27778,
		label="Biscuit pileup",
		pos="360,180",
		rects="318.5,170.5,401.5,189.5",
		width=1.1528];
	reference_index -> pileup	[_draw_="c 7 -#000000 B 4 355.3 313.6 356.11 290.82 358.35 227.55 359.42 197.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 361.86 197.77 359.66 190.69 356.96 197.6 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 377 245.6 0 40 9 -reference ",
		label=reference,
		lp="377,247.5",
		pos="e,359.71,189.18 355.3,313.6 356.11,290.82 358.35,227.55 359.42,197.39"];
	reference_index -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 10 380.35 313.57 388.81 310.79 398.3 307.72 407 305 432.23 297.11 438.09 293.25 464 288 478.46 285.07 493.79 282.62 \
508.96 280.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 509.23 283 515.86 279.67 508.6 278.14 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 497 290.6 0 66 15 -reference_index ",
		label=reference_index,
		lp="497,292.5",
		pos="e,517.36,279.47 380.35,313.57 388.81,310.79 398.3,307.72 407,305 432.23,297.11 438.09,293.25 464,288 478.46,285.07 493.79,282.62 \
508.96,280.57"];
	bam_to_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 469 170.5 469 189.5 609 189.5 609 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 539 177.5 0 124 22 -BAM to CRAM conversion ",
		height=0.27778,
		label="BAM to CRAM conversion",
		pos="539,180",
		rects="469,170.5,609,189.5",
		width=1.9444];
	reference_index -> bam_to_cram	[_draw_="c 7 -#000000 B 7 360.18 313.55 377.23 285.76 430.58 198.94 432 198 437.58 194.29 448.34 191.33 460.96 188.99 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 461.05 191.46 467.53 187.87 460.22 186.63 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 423 245.6 0 40 9 -reference ",
		label=reference,
		lp="423,247.5",
		pos="e,469.03,187.61 360.18,313.55 377.23,285.76 430.58,198.94 432,198 437.58,194.29 448.34,191.33 460.96,188.99"];
	instrument_data_bams -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 4 618 313.58 618 306.52 618 296.24 618 287.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 620.45 287.78 618 280.78 615.55 287.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 627.5 290.6 0 19 3 -bam ",
		label=bam,
		lp="627.5,292.5",
		pos="e,618,279.26 618,313.58 618,306.52 618,296.24 618,287.55"];
	trimming_adapter_trim_end -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 1082.32 313.5 1068.54 310.46 1052.6 307.24 1038 305 941.35 290.19 831.13 281.58 747.86 276.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 748.02 274.28 740.89 276.33 747.74 279.17 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1005 290.6 0 72 16 -adapter_trim_end ",
		label=adapter_trim_end,
		lp="1005,292.5",
		pos="e,739.38,276.24 1082.3,313.5 1068.5,310.46 1052.6,307.24 1038,305 941.35,290.19 831.13,281.58 747.86,276.73"];
	trimming_adapters -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 10 1228.09 313.5 1217.88 310.43 1205.98 307.18 1195 305 1127.89 291.7 1110.22 293.15 1042 288 943.36 280.55 831.54 \
276.24 747.51 273.82 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 747.79 271.38 740.72 273.63 747.65 276.28 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1166.5 290.6 0 37 8 -adapters ",
		label=adapters,
		lp="1166.5,292.5",
		pos="e,739.21,273.59 1228.1,313.5 1217.9,310.43 1206,307.18 1195,305 1127.9,291.7 1110.2,293.15 1042,288 943.36,280.55 831.54,276.24 \
747.51,273.82"];
	trimming_min_readlength -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 494.35 313.61 509.32 306.17 532.25 295.36 553 288 559.48 285.7 566.42 283.56 573.27 281.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 573.66 284.06 579.77 279.85 572.37 279.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 585 290.6 0 64 14 -min_readlength ",
		label=min_readlength,
		lp="585,292.5",
		pos="e,581.23,279.46 494.35,313.61 509.32,306.17 532.25,295.36 553,288 559.48,285.7 566.42,283.56 573.27,281.63"];
	read_group_id -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 4 711.51 313.58 693.1 305.2 664.7 292.27 644.03 282.85 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 645.29 280.73 637.9 280.06 643.25 285.19 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 703 290.6 0 58 13 -read_group_id ",
		label=read_group_id,
		lp="703,292.5",
		pos="e,636.52,279.43 711.51,313.58 693.1,305.2 664.7,292.27 644.03,282.85"];
	pileup -> vcf	[_draw_="c 7 -#000000 B 7 318.74 177.18 270.91 174.09 196.4 165.98 179 145 168.93 132.86 173.81 87.28 177.38 62.42 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 179.76 63.08 178.38 55.79 174.91 62.35 ",
		pos="e,178.61,54.295 318.74,177.18 270.91,174.09 196.4,165.98 179,145 168.93,132.86 173.81,87.275 177.38,62.416"];
	vcf2bed	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 179 125.5 179 144.5 561 144.5 561 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 370 132.5 0 366 77 -convert a biscuit pileup vcf to a bed and bedgraph file, via a wrapper script ",
		height=0.27778,
		label="convert a biscuit pileup vcf to a bed and bedgraph file, via a wrapper script",
		pos="370,135",
		rects="179,125.5,561,144.5",
		width=5.3056];
	pileup -> vcf2bed	[_draw_="c 7 -#000000 B 4 361.93 170.71 363.15 165.47 364.76 158.53 366.22 152.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 368.54 153.11 367.73 145.74 363.76 152 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 371.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="371.5,157.5",
		pos="e,368.08,144.27 361.93,170.71 363.15,165.47 364.76,158.53 366.22,152.24"];
	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 484 215.5 484 234.5 594 234.5 594 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 539 222.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="539,225",
		rects="484,215.5,594,234.5",
		width=1.5278];
	bam_to_trimmed_fastq_and_biscuit_alignments -> merge	[_draw_="c 7 -#000000 B 4 602.39 260.5 590.81 254.2 574.85 245.51 561.84 238.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 563.22 236.4 555.9 235.2 560.88 240.7 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 596.5 245.6 0 23 4 -bams ",
		label=bams,
		lp="596.5,247.5",
		pos="e,554.58,234.48 602.39,260.5 590.81,254.2 574.85,245.51 561.84,238.43"];
	merge -> pileup	[_draw_="c 7 -#000000 B 4 503.64 215.5 474.83 208.58 434.04 198.79 403.28 191.4 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 404.14 189.08 396.76 189.83 403 193.85 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 474.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="474.5,202.5",
		pos="e,395.29,189.48 503.64,215.5 474.83,208.58 434.04,198.79 403.28,191.4"];
	merge -> bam_to_cram	[_draw_="c 7 -#000000 B 4 539 215.71 539 210.59 539 203.85 539 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 541.45 197.78 539 190.78 536.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 548.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="548.5,202.5",
		pos="e,539,189.27 539,215.71 539,210.59 539,203.85 539,197.67"];
	index_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 385.5 80.5 385.5 99.5 504.5 99.5 504.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 445 87.5 0 103 19 -samtools index cram ",
		height=0.27778,
		label="samtools index cram",
		pos="445,90",
		rects="385.5,80.5,504.5,99.5",
		width=1.6528];
	bam_to_cram -> index_cram	[_draw_="c 7 -#000000 B 7 547.23 170.65 557.28 159.44 571.68 139.26 561 125 549.44 109.56 531.23 100.83 512.63 95.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 513.22 93.59 505.85 94.4 512.12 98.37 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 574.5 133.1 0 21 4 -cram ",
		label=cram,
		lp="574.5,135",
		pos="e,504.37,94.062 547.23,170.65 557.28,159.44 571.68,139.26 561,125 549.44,109.56 531.23,100.83 512.63,95.972"];
	index_cram -> cram	[_draw_="c 7 -#000000 B 4 409.24 80.5 375 72.37 324.03 60.26 292.46 52.76 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 293.34 50.45 285.96 51.22 292.21 55.22 ",
		pos="e,284.49,50.868 409.24,80.505 375,72.371 324.03,60.261 292.46,52.762"];
	vcf2bed -> cpgs	[_draw_="c 7 -#000000 B 7 353.58 125.67 329 113.02 281.42 87.79 243 63 241.17 61.82 239.3 60.55 237.45 59.25 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 238.89 57.27 231.79 55.14 236.01 61.23 ",
		pos="e,230.57,54.245 353.58,125.67 329,113.02 281.42,87.793 243,63 241.17,61.822 239.3,60.55 237.45,59.251"];
	vcf2bed -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 7 267.14 125.5 245.56 123.18 222.99 120.36 202 117 176.45 112.91 148.13 106.72 125.63 101.41 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 126.48 99.09 119.1 99.85 125.34 103.86 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 222 110.6 0 40 8 -bedgraph ",
		label=bedgraph,
		lp="222,112.5",
		pos="e,117.63,99.499 267.14,125.5 245.56,123.18 222.99,120.36 202,117 176.45,112.91 148.13,106.72 125.63,101.41"];
	bedgraph_to_bigwig -> cpg_bedgraph	[_draw_="c 7 -#000000 B 4 90.36 80.71 94.65 75.12 100.44 67.58 105.52 60.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 107.42 62.51 109.74 55.47 103.53 59.53 ",
		pos="e,110.66,54.265 90.363,80.709 94.654,75.117 100.44,67.579 105.52,60.957"];
}