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		rects="1210,80.5,1288,99.5",
		width=1.0833];
	phased_proximal_variants_file -> pvacseq	[_draw_="c 7 -#000000 B 13 104.47 313.73 110.39 303.95 119 286.98 119 271 119 271 119 271 119 134 119 88.3 277.42 111.31 323 108 496.5 95.39 \
1038.25 91.95 1201.79 91.19 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1201.7 93.64 1208.69 91.16 1201.68 88.74 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 180.5 200.6 0 123 29 -phased_proximal_variants_file ",
		label=phased_proximal_variants_file,
		lp="180.5,202.5",
		pos="e,1210.2,91.151 104.47,313.73 110.39,303.95 119,286.98 119,271 119,271 119,271 119,134 119,88.3 277.42,111.31 323,108 496.5,95.388 \
1038.3,91.951 1201.8,91.189"];
	netmhc_stab -> pvacseq	[_draw_="c 7 -#000000 B 10 240.73 313.5 253.86 304.71 271 289.66 271 271 271 271 271 271 271 134 271 86.85 1006.14 89.13 1201.7 90.58 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1201.53 93.03 1208.54 90.63 1201.56 88.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 297.5 200.6 0 53 11 -netmhc_stab ",
		label=netmhc_stab,
		lp="297.5,202.5",
		pos="e,1210.1,90.641 240.73,313.5 253.86,304.71 271,289.66 271,271 271,271 271,271 271,134 271,86.848 1006.1,89.135 1201.7,90.577"];
	minimum_fold_change -> pvacseq	[_draw_="c 7 -#000000 B 10 336.36 313.78 339.03 303.76 343 286.28 343 271 343 271 343 271 343 134 343 90.6 1015.15 90.06 1201.57 90.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1201.55 93.2 1208.56 90.77 1201.57 88.3 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 389 200.6 0 92 19 -minimum_fold_change ",
		label=minimum_fold_change,
		lp="389,202.5",
		pos="e,1210.1,90.781 336.36,313.78 339.03,303.76 343,286.28 343,271 343,271 343,271 343,134 343,90.598 1015.1,90.062 1201.6,90.747"];
	tumor_rna_bam_readcount	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2623 260.5 2623 279.5 2733 279.5 2733 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2678 267.5 0 94 17 -run bam-readcount ",
		height=0.27778,
		label="run bam-readcount",
		pos="2678,270",
		rects="2623,260.5,2733,279.5",
		width=1.5278];
	readcount_minimum_mapping_quality -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 7 3220.9 313.53 3202.56 310.47 3181.35 307.23 3162 305 3011.67 287.7 2833.99 277.94 2741.37 273.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2741.56 271.21 2734.46 273.34 2741.34 276.1 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3126.5 290.6 0 87 19 -min_mapping_quality ",
		label=min_mapping_quality,
		lp="3126.5,292.5",
		pos="e,2732.9,273.27 3220.9,313.53 3202.6,310.47 3181.3,307.23 3162,305 3011.7,287.7 2834,277.94 2741.4,273.65"];
	add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2256.5 125.5 2256.5 144.5 2399.5 144.5 2399.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2328 132.5 0 127 26 -add expression info to vcf ",
		height=0.27778,
		label="add expression info to vcf",
		pos="2328,135",
		rects="2256.5,125.5,2399.5,144.5",
		width=1.9861];
	transcript_expression_file -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 10 3413.29 313.58 3380.87 304.24 3336 288.21 3336 271 3336 271 3336 271 3336 179 3336 155.81 2645.62 141.55 2407.56 \
137.33 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2407.84 134.88 2400.8 137.21 2407.75 139.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3366.5 223.1 0 61 15 -expression_file ",
		label=expression_file,
		lp="3366.5,225",
		pos="e,2399.3,137.18 3413.3,313.58 3380.9,304.24 3336,288.21 3336,271 3336,271 3336,271 3336,179 3336,155.81 2645.6,141.55 2407.6,137.33"];
	top_score_metric -> pvacseq	[_draw_="c 7 -#000000 B 13 457.37 313.59 462.11 303.68 469 286.59 469 271 469 271 469 271 469 134 469 85.49 526.92 114.43 575 108 696.33 \
91.78 1069.31 90.72 1201.75 90.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1201.6 93.32 1208.6 90.88 1201.61 88.42 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 504 200.6 0 70 16 -top_score_metric ",
		label=top_score_metric,
		lp="504,202.5",
		pos="e,1210.1,90.882 457.37,313.59 462.11,303.68 469,286.59 469,271 469,271 469,271 469,134 469,85.492 526.92,114.43 575,108 696.33,91.782 \
1069.3,90.717 1201.7,90.87"];
	alleles -> pvacseq	[_draw_="c 7 -#000000 B 13 543.61 313.66 554.78 304.56 570 288.89 570 271 570 271 570 271 570 134 570 100.4 608 114.33 641 108 695.35 97.58 \
1068.44 92.82 1201.76 91.44 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1201.71 93.9 1208.68 91.37 1201.66 89 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 584 200.6 0 28 7 -alleles ",
		label=alleles,
		lp="584,202.5",
		pos="e,1210.2,91.359 543.61,313.66 554.78,304.56 570,288.89 570,271 570,271 570,271 570,134 570,100.4 608,114.33 641,108 695.35,97.575 \
1068.4,92.824 1201.8,91.445"];
	rnaseq_bam -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 7 2553.47 313.64 2560.57 310.81 2568.61 307.69 2576 305 2598.35 296.86 2623.73 288.4 2643.58 281.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2644.1 284.36 2650 279.88 2642.59 279.7 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2632.5 290.6 0 19 3 -bam ",
		label=bam,
		lp="2632.5,292.5",
		pos="e,2651.4,279.41 2553.5,313.64 2560.6,310.81 2568.6,307.69 2576,305 2598.4,296.86 2623.7,288.4 2643.6,281.95"];
	additional_report_columns -> pvacseq	[_draw_="c 7 -#000000 B 13 635.31 313.72 636.8 303.65 639 286.12 639 271 639 271 639 271 639 134 639 67.65 720.02 115.01 786 108 937.37 91.91 \
1117.97 90.32 1201.86 90.58 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1201.63 93.03 1208.64 90.61 1201.65 88.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 693.5 200.6 0 109 25 -additional_report_columns ",
		label=additional_report_columns,
		lp="693.5,202.5",
		pos="e,1210.2,90.617 635.31,313.72 636.8,303.65 639,286.12 639,271 639,271 639,271 639,134 639,67.653 720.02,115.01 786,108 937.37,91.912 \
1118,90.32 1201.9,90.583"];
	epitope_lengths -> pvacseq	[_draw_="c 7 -#000000 B 10 759.79 313.71 760.68 303.62 762 286.08 762 271 762 271 762 271 762 134 762 90.12 1079.76 89.07 1201.93 90.29 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1201.84 92.74 1208.87 90.37 1201.89 87.84 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 795.5 200.6 0 67 15 -epitope_lengths ",
		label=epitope_lengths,
		lp="795.5,202.5",
		pos="e,1210.4,90.383 759.79,313.71 760.68,303.62 762,286.08 762,271 762,271 762,271 762,134 762,90.121 1079.8,89.073 1201.9,90.292"];
	expn_val -> pvacseq	[_draw_="c 7 -#000000 B 10 858.55 313.53 879.58 302.8 912 284.13 912 271 912 271 912 271 912 134 912 105.15 1108.82 95.28 1201.63 92.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1201.58 94.69 1208.5 92.01 1201.43 89.79 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 930 200.6 0 36 8 -expn_val ",
		label=expn_val,
		lp="930,202.5",
		pos="e,1210,91.967 858.55,313.53 879.58,302.8 912,284.13 912,271 912,271 912,271 912,134 912,105.15 1108.8,95.283 1201.6,92.233"];
	add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2305.5 170.5 2305.5 189.5 2448.5 189.5 2448.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2377 177.5 0 127 26 -add expression info to vcf ",
		height=0.27778,
		label="add expression info to vcf",
		pos="2377,180",
		rects="2305.5,170.5,2448.5,189.5",
		width=1.9861];
	sample_name -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 10 2349.29 313.7 2365.86 299.61 2397.83 269.16 2410 235 2415.52 219.51 2418.56 212.04 2410 198 2409.33 196.9 2408.56 \
195.87 2407.72 194.9 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2409.3 193.03 2402.38 190.38 2406.14 196.77 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2435 245.6 0 58 11 -sample_name ",
		label=sample_name,
		lp="2435,247.5",
		pos="e,2401.2,189.4 2349.3,313.7 2365.9,299.61 2397.8,269.16 2410,235 2415.5,219.51 2418.6,212.04 2410,198 2409.3,196.9 2408.6,195.87 \
2407.7,194.9"];
	sample_name -> pvacseq	[_draw_="c 7 -#000000 B 22 2321.53 313.6 2314.57 309.47 2307.03 303.88 2302 297 2279.73 266.54 2307.68 240.65 2280 215 2265.42 201.49 2254.22 \
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108 1740.55 97.12 1418.04 92.74 1296.25 91.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1296.37 89 1289.35 91.37 1296.32 93.9 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2265 200.6 0 58 11 -sample_name ",
		label=sample_name,
		lp="2265,202.5",
		pos="e,1287.8,91.359 2321.5,313.6 2314.6,309.47 2307,303.88 2302,297 2279.7,266.54 2307.7,240.65 2280,215 2265.4,201.49 2254.2,214.95 \
2236,207 2229.9,204.33 2230,200.89 2224,198 2107.7,142.01 2069.1,152.49 1943,125 1900.7,115.77 1890.1,112.41 1847,108 1740.5,97.121 \
1418,92.741 1296.2,91.446"];
	add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2434 215.5 2434 234.5 2600 234.5 2600 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2517 222.5 0 150 29 -add bam_readcount info to vcf ",
		height=0.27778,
		label="add bam_readcount info to vcf",
		pos="2517,225",
		rects="2434,215.5,2600,234.5",
		width=2.3056];
	sample_name -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 13 2359.32 313.65 2367.49 310.56 2377.08 307.26 2386 305 2395.09 302.7 2546.75 287 2553 280 2563.96 267.73 2562.88 \
256.85 2554 243 2553.21 241.77 2552.31 240.63 2551.32 239.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2553 237.78 2546.01 235.3 2549.93 241.6 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2589 268.1 0 58 11 -sample_name ",
		label=sample_name,
		lp="2589,270",
		pos="e,2544.8,234.36 2359.3,313.65 2367.5,310.56 2377.1,307.26 2386,305 2395.1,302.7 2546.8,287 2553,280 2564,267.73 2562.9,256.85 2554,\
243 2553.2,241.77 2552.3,240.63 2551.3,239.57"];
	sample_name -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 10 2326.03 313.53 2314.02 304.55 2298 289.18 2298 271 2298 271 2298 271 2298 179 2298 168.05 2304.63 157.89 2311.65 \
150.2 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2313.21 152.11 2316.44 145.43 2309.75 148.64 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2327 223.1 0 58 11 -sample_name ",
		label=sample_name,
		lp="2327,225",
		pos="e,2317.5,144.36 2326,313.53 2314,304.55 2298,289.18 2298,271 2298,271 2298,271 2298,179 2298,168.05 2304.6,157.89 2311.7,150.2"];
	sample_name -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 13 2358.3 313.6 2366.66 310.33 2376.65 306.93 2386 305 2444.87 292.87 2461.34 304.33 2521 297 2542.54 294.35 2547.61 \
291.67 2569 288 2578.17 286.43 2596.07 283.6 2614.76 280.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2615.04 283.13 2621.58 279.64 2614.29 278.29 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2584.5 290.6 0 31 6 -sample ",
		label=sample,
		lp="2584.5,292.5",
		pos="e,2623.1,279.41 2358.3,313.6 2366.7,310.33 2376.7,306.93 2386,305 2444.9,292.87 2461.3,304.33 2521,297 2542.5,294.35 2547.6,291.67 \
2569,288 2578.2,286.43 2596.1,283.6 2614.8,280.7"];
	trna_cov -> pvacseq	[_draw_="c 7 -#000000 B 13 921.32 313.57 947.02 300.19 994 275.14 994 271 994 271 994 271 994 134 994 98.72 1034.52 115.49 1069 108 1113.44 \
98.34 1165.23 94.17 1201.82 92.37 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1201.92 94.82 1208.81 92.05 1201.7 89.92 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1011.5 200.6 0 35 8 -trna_cov ",
		label=trna_cov,
		lp="1011.5,202.5",
		pos="e,1210.3,91.982 921.32,313.57 947.02,300.19 994,275.14 994,271 994,271 994,271 994,134 994,98.721 1034.5,115.49 1069,108 1113.4,\
98.345 1165.2,94.173 1201.8,92.371"];
	trna_vaf -> pvacseq	[_draw_="c 7 -#000000 B 10 983.51 313.58 1009.49 300.21 1057 275.18 1057 271 1057 271 1057 271 1057 134 1057 104.43 1144.8 95.19 1201.65 \
92.31 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1201.76 94.75 1208.63 91.98 1201.53 89.86 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1074 200.6 0 34 8 -trna_vaf ",
		label=trna_vaf,
		lp="1074,202.5",
		pos="e,1210.1,91.91 983.51,313.58 1009.5,300.21 1057,275.18 1057,271 1057,271 1057,271 1057,134 1057,104.43 1144.8,95.191 1201.7,92.306"];
	fasta_size -> pvacseq	[_draw_="c 7 -#000000 B 10 1052.18 313.54 1074.69 302.99 1109 284.67 1109 271 1109 271 1109 271 1109 134 1109 114.14 1161.14 102.5 1201.79 \
96.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1201.92 98.91 1208.5 95.49 1201.23 94.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1130 200.6 0 42 10 -fasta_size ",
		label=fasta_size,
		lp="1130,202.5",
		pos="e,1210,95.28 1052.2,313.54 1074.7,302.99 1109,284.67 1109,271 1109,271 1109,271 1109,134 1109,114.14 1161.1,102.5 1201.8,96.452"];
	readcount_minimum_base_quality -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 4 2767.33 313.58 2749.83 305.24 2722.86 292.38 2703.13 282.98 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2704.43 280.89 2697.06 280.09 2702.33 285.31 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2766.5 290.6 0 71 16 -min_base_quality ",
		label=min_base_quality,
		lp="2766.5,292.5",
		pos="e,2695.7,279.43 2767.3,313.58 2749.8,305.24 2722.9,292.38 2703.1,282.98"];
	net_chop_method -> pvacseq	[_draw_="c 7 -#000000 B 10 1135.61 313.68 1148.2 304.82 1165 289.53 1165 271 1165 271 1165 271 1165 134 1165 114.56 1183.04 103.9 1202.41 \
98.06 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1202.85 100.48 1208.98 96.31 1201.58 95.75 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1201.5 200.6 0 73 15 -net_chop_method ",
		label=net_chop_method,
		lp="1201.5,202.5",
		pos="e,1210.4,95.915 1135.6,313.68 1148.2,304.82 1165,289.53 1165,271 1165,271 1165,271 1165,134 1165,114.56 1183,103.9 1202.4,98.065"];
	peptide_sequence_length -> pvacseq	[_draw_="c 7 -#000000 B 10 1249 313.7 1249 303.6 1249 286.05 1249 271 1249 271 1249 271 1249 134 1249 125.31 1249 115.63 1249 107.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1251.45 107.76 1249 100.76 1246.55 107.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1302 200.6 0 106 23 -peptide_sequence_length ",
		label=peptide_sequence_length,
		lp="1302,202.5",
		pos="e,1249,99.243 1249,313.7 1249,303.6 1249,286.05 1249,271 1249,271 1249,271 1249,134 1249,125.31 1249,115.63 1249,107.65"];
	normal_sample_name -> pvacseq	[_draw_="c 7 -#000000 B 10 1383.11 313.81 1379.85 303.84 1375 286.4 1375 271 1375 271 1375 271 1375 134 1375 116.65 1331.66 104.86 1295.81 \
98.08 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1296.65 95.74 1289.32 96.89 1295.77 100.56 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1420 200.6 0 90 18 -normal_sample_name ",
		label=normal_sample_name,
		lp="1420,202.5",
		pos="e,1287.8,96.622 1383.1,313.81 1379.9,303.84 1375,286.4 1375,271 1375,271 1375,271 1375,134 1375,116.65 1331.7,104.86 1295.8,98.076"];
	reference_fasta -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 10 2904.76 313.53 2896.38 310.63 2886.82 307.49 2878 305 2845.11 295.71 2836.63 294.09 2803 288 2783.01 284.38 2761.1 \
281.15 2741.28 278.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2741.69 276.09 2734.43 277.61 2741.05 280.95 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2879.5 290.6 0 65 15 -reference_fasta ",
		label=reference_fasta,
		lp="2879.5,292.5",
		pos="e,2732.9,277.41 2904.8,313.53 2896.4,310.63 2886.8,307.49 2878,305 2845.1,295.71 2836.6,294.09 2803,288 2783,284.38 2761.1,281.15 \
2741.3,278.51"];
	detect_variants_vcf -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 10 2624.37 313.6 2616.42 305.47 2603.17 293.58 2589 288 2568.67 279.99 2505.81 296.07 2491 280 2480.41 268.51 2491.19 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2503.55 242 2506.68 235.28 2500.04 238.58 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2497.5 268.1 0 13 3 -vcf ",
		label=vcf,
		lp="2497.5,270",
		pos="e,2507.7,234.19 2624.4,313.6 2616.4,305.47 2603.2,293.58 2589,288 2568.7,279.99 2505.8,296.07 2491,280 2480.4,268.51 2491.2,251.92 \
2501.9,240.16"];
	detect_variants_vcf -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 4 2639.6 313.58 2646.5 305.93 2656.82 294.48 2665.02 285.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2666.66 287.23 2669.53 280.39 2663.02 283.95 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2667.5 290.6 0 13 3 -vcf ",
		label=vcf,
		lp="2667.5,292.5",
		pos="e,2670.5,279.26 2639.6,313.58 2646.5,305.93 2656.8,294.48 2665,285.39"];
	exclude_nas -> pvacseq	[_draw_="c 7 -#000000 B 10 1488.64 313.78 1485.97 303.76 1482 286.28 1482 271 1482 271 1482 271 1482 134 1482 96.62 1364.59 90.64 1296.46 \
90.32 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1296.52 87.87 1289.51 90.31 1296.51 92.77 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1507.5 200.6 0 51 11 -exclude_nas ",
		label=exclude_nas,
		lp="1507.5,202.5",
		pos="e,1288,90.307 1488.6,313.78 1486,303.76 1482,286.28 1482,271 1482,271 1482,271 1482,134 1482,96.624 1364.6,90.644 1296.5,90.32"];
	prediction_algorithms -> pvacseq	[_draw_="c 7 -#000000 B 10 1582.03 313.53 1570.02 304.55 1554 289.18 1554 271 1554 271 1554 271 1554 134 1554 108.29 1381.82 96.94 1296.19 \
92.88 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1296.56 90.45 1289.45 92.57 1296.33 95.34 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1598.5 200.6 0 89 21 -prediction_algorithms ",
		label=prediction_algorithms,
		lp="1598.5,202.5",
		pos="e,1287.9,92.503 1582,313.53 1570,304.55 1554,289.18 1554,271 1554,271 1554,271 1554,134 1554,108.29 1381.8,96.938 1296.2,92.884"];
	tdna_cov -> pvacseq	[_draw_="c 7 -#000000 B 10 1681.28 313.68 1671.54 304.36 1658 288.3 1658 271 1658 271 1658 271 1658 134 1658 97.98 1403.89 92.03 1296.26 \
91.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1296.38 88.67 1289.36 91.07 1296.34 93.57 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1676.5 200.6 0 37 8 -tdna_cov ",
		label=tdna_cov,
		lp="1676.5,202.5",
		pos="e,1287.8,91.06 1681.3,313.68 1671.5,304.36 1658,288.3 1658,271 1658,271 1658,271 1658,134 1658,97.982 1403.9,92.029 1296.3,91.123"];
	tdna_vaf -> pvacseq	[_draw_="c 7 -#000000 B 10 1741.08 313.76 1728.19 304.95 1711 289.71 1711 271 1711 271 1711 271 1711 134 1711 92.69 1414.4 89.97 1296.5 90.53 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1296.49 88.08 1289.51 90.56 1296.52 92.98 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1729 200.6 0 36 8 -tdna_vaf ",
		label=tdna_vaf,
		lp="1729,202.5",
		pos="e,1288,90.572 1741.1,313.76 1728.2,304.95 1711,289.71 1711,271 1711,271 1711,271 1711,134 1711,92.692 1414.4,89.974 1296.5,90.525"];
	net_chop_threshold -> pvacseq	[_draw_="c 7 -#000000 B 13 1830.27 313.5 1817.14 304.71 1800 289.66 1800 271 1800 271 1800 271 1800 134 1800 78.56 1733.01 114.9 1678 108 \
1540.1 90.7 1375.5 89.58 1296.25 90.25 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1296.42 87.8 1289.44 90.32 1296.47 92.7 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1840.5 200.6 0 81 18 -net_chop_threshold ",
		label=net_chop_threshold,
		lp="1840.5,202.5",
		pos="e,1287.9,90.332 1830.3,313.5 1817.1,304.71 1800,289.66 1800,271 1800,271 1800,271 1800,134 1800,78.56 1733,114.9 1678,108 1540.1,\
90.702 1375.5,89.583 1296.2,90.252"];
	downstream_sequence_length -> pvacseq	[_draw_="c 7 -#000000 B 10 1971.41 313.5 1957.2 304.9 1939 290.15 1939 271 1939 271 1939 271 1939 134 1939 101.72 1451.49 93.32 1296.03 91.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1296.12 89.02 1289.09 91.39 1296.06 93.92 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2002 200.6 0 126 26 -downstream_sequence_length ",
		label=downstream_sequence_length,
		lp="2002,202.5",
		pos="e,1287.6,91.37 1971.4,313.5 1957.2,304.9 1939,290.15 1939,271 1939,271 1939,271 1939,134 1939,101.72 1451.5,93.324 1296,91.469"];
	gene_expression_file -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 7 2137.17 313.54 2146.55 289.9 2176.71 223.18 2227 198 2239.69 191.64 2268.5 187.62 2297.51 185.1 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2297.4 187.57 2304.17 184.55 2297 182.68 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2205.5 245.6 0 61 15 -expression_file ",
		label=expression_file,
		lp="2205.5,247.5",
		pos="e,2305.7,184.43 2137.2,313.54 2146.5,289.9 2176.7,223.18 2227,198 2239.7,191.64 2268.5,187.62 2297.5,185.1"];
	maximum_transcript_support_level -> pvacseq	[_draw_="c 7 -#000000 B 10 3553.42 313.55 3530.47 306.61 3510 293.97 3510 271 3510 271 3510 271 3510 134 3510 105.28 1620.11 93.13 1296.02 \
91.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1296.3 88.81 1289.28 91.22 1296.27 93.71 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3581 200.6 0 142 32 -maximum_transcript_support_level ",
		label=maximum_transcript_support_level,
		lp="3581,202.5",
		pos="e,1287.8,91.213 3553.4,313.55 3530.5,306.61 3510,293.97 3510,271 3510,271 3510,271 3510,134 3510,105.28 1620.1,93.133 1296,91.261"];
	expression_tool -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 16 2250.61 313.6 2255.69 306.35 2263.64 295.83 2272 288 2297.65 263.98 2304.07 255.24 2337 243 2352.71 237.16 2400.36 \
247.06 2412 235 2423.44 223.15 2422.89 211.86 2414 198 2413.21 196.77 2412.31 195.63 2411.32 194.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2413 192.78 2406.01 190.3 2409.93 196.6 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2369 245.6 0 64 15 -expression_tool ",
		label=expression_tool,
		lp="2369,247.5",
		pos="e,2404.8,189.36 2250.6,313.6 2255.7,306.35 2263.6,295.83 2272,288 2297.6,263.98 2304.1,255.24 2337,243 2352.7,237.16 2400.4,247.06 \
2412,235 2423.4,223.15 2422.9,211.86 2414,198 2413.2,196.77 2412.3,195.63 2411.3,194.57"];
	expression_tool -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 16 2256.35 313.56 2261.22 309.21 2266.4 303.47 2269 297 2277.96 274.73 2284.57 261.26 2269 243 2254.4 225.88 2233.6 \
252.12 2219 235 2213.23 228.24 2217.06 223.67 2219 215 2226.71 180.5 2263.37 159.18 2292.07 147.52 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2292.87 149.84 2298.52 145.03 2291.1 145.27 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2251 223.1 0 64 15 -expression_tool ",
		label=expression_tool,
		lp="2251,225",
		pos="e,2299.9,144.49 2256.3,313.56 2261.2,309.21 2266.4,303.47 2269,297 2278,274.73 2284.6,261.26 2269,243 2254.4,225.88 2233.6,252.12 \
2219,235 2213.2,228.24 2217.1,223.67 2219,215 2226.7,180.5 2263.4,159.18 2292.1,147.52"];
	normal_cov -> pvacseq	[_draw_="c 7 -#000000 B 10 3740.39 313.66 3729.22 304.56 3714 288.89 3714 271 3714 271 3714 271 3714 134 3714 102.58 1638.37 92.62 1296.42 \
91.19 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1296.49 88.74 1289.48 91.16 1296.47 93.64 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3737.5 200.6 0 47 10 -normal_cov ",
		label=normal_cov,
		lp="3737.5,202.5",
		pos="e,1288,91.153 3740.4,313.66 3729.2,304.56 3714,288.89 3714,271 3714,271 3714,271 3714,134 3714,102.58 1638.4,92.616 1296.4,91.188"];
	normal_vaf -> pvacseq	[_draw_="c 7 -#000000 B 13 3822.99 313.81 3816.47 304.1 3807 287.2 3807 271 3807 271 3807 271 3807 134 3807 112.3 4151.55 128.71 3291 108 \
2493.17 88.8 1519.56 90.22 1296.18 90.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1296.45 88.39 1289.45 90.86 1296.46 93.29 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3830 200.6 0 46 10 -normal_vaf ",
		label=normal_vaf,
		lp="3830,202.5",
		pos="e,1287.9,90.868 3823,313.81 3816.5,304.1 3807,287.2 3807,271 3807,271 3807,271 3807,134 3807,112.3 4151.6,128.71 3291,108 2493.2,\
88.802 1519.6,90.222 1296.2,90.844"];
	add_gene_expression_data_to_vcf -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 4 2367.55 170.71 2360.77 164.76 2351.48 156.61 2343.61 149.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2345.43 148.04 2338.56 145.26 2342.2 151.72 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2362.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="2362.5,157.5",
		pos="e,2337.4,144.27 2367.6,170.71 2360.8,164.76 2351.5,156.61 2343.6,149.7"];
	pvacseq -> mhc_ii_ranked_epitopes	[_draw_="c 7 -#000000 B 7 1210.28 89.24 1129 89.21 934.79 86.45 774 63 763.31 61.44 751.87 59.04 741.36 56.52 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 742.02 54.16 734.64 54.86 740.85 58.92 ",
		pos="e,733.17,54.495 1210.3,89.236 1129,89.214 934.79,86.454 774,63 763.31,61.441 751.87,59.036 741.36,56.521"];
	pvacseq -> mhc_ii_filtered_epitopes	[_draw_="c 7 -#000000 B 7 1210.09 87.93 1147.41 85.77 1020.34 79.58 914 63 903.29 61.33 891.81 58.91 881.23 56.42 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 881.83 54.05 874.45 54.78 880.68 58.81 ",
		pos="e,872.98,54.422 1210.1,87.928 1147.4,85.766 1020.3,79.579 914,63 903.29,61.33 891.81,58.912 881.23,56.421"];
	pvacseq -> combined_ranked_epitopes	[_draw_="c 7 -#000000 B 7 1210.04 84.2 1173.3 79.48 1116.75 71.74 1068 63 1057 61.03 1045.19 58.64 1034.14 56.28 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1034.71 53.89 1027.35 54.81 1033.67 58.68 ",
		pos="e,1025.9,54.488 1210,84.196 1173.3,79.479 1116.7,71.735 1068,63 1057,61.028 1045.2,58.637 1034.1,56.278"];
	pvacseq -> mhc_i_all_epitopes	[_draw_="c 7 -#000000 B 4 1224.11 80.5 1204.52 73.82 1177.06 64.45 1155.7 57.16 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1156.69 54.91 1149.27 54.97 1155.11 59.55 ",
		pos="e,1147.8,54.478 1224.1,80.505 1204.5,73.82 1177.1,64.449 1155.7,57.16"];
	pvacseq -> mhc_i_filtered_epitopes	[_draw_="c 7 -#000000 B 4 1249 80.71 1249 75.59 1249 68.85 1249 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1251.45 62.78 1249 55.78 1246.55 62.78 ",
		pos="e,1249,54.265 1249,80.709 1249,75.593 1249,68.848 1249,62.666"];
	pvacseq -> combined_filtered_epitopes	[_draw_="c 7 -#000000 B 4 1278.04 80.5 1301.3 73.7 1334.06 64.12 1359.16 56.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1359.53 59.22 1365.57 54.9 1358.16 54.52 ",
		pos="e,1367,54.478 1278,80.505 1301.3,73.702 1334.1,64.118 1359.2,56.776"];
	pvacseq -> mhc_ii_all_epitopes	[_draw_="c 7 -#000000 B 7 1287.74 86.4 1332.63 82.95 1408.68 75.76 1473 63 1481.36 61.34 1490.26 59.09 1498.57 56.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1499.13 59.16 1505.19 54.88 1497.78 54.45 ",
		pos="e,1506.6,54.458 1287.7,86.401 1332.6,82.953 1408.7,75.76 1473,63 1481.4,61.341 1490.3,59.094 1498.6,56.778"];
	pvacseq -> combined_all_epitopes	[_draw_="c 7 -#000000 B 7 1287.86 88.17 1351.42 86.33 1481.43 80.58 1590 63 1600.04 61.37 1610.78 59 1620.68 56.53 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1621.13 58.95 1627.3 54.83 1619.92 54.2 ",
		pos="e,1628.8,54.458 1287.9,88.169 1351.4,86.333 1481.4,80.582 1590,63 1600,61.374 1610.8,58.997 1620.7,56.533"];
	pvacseq -> mhc_i_ranked_epitopes	[_draw_="c 7 -#000000 B 7 1287.96 89.31 1369.28 89.43 1562.83 86.91 1723 63 1733.49 61.43 1744.73 59 1755.01 56.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1755.39 58.89 1761.56 54.79 1754.18 54.15 ",
		pos="e,1763,54.415 1288,89.314 1369.3,89.433 1562.8,86.91 1723,63 1733.5,61.433 1744.7,59.001 1755,56.46"];
	add_tumor_rna_bam_readcount_to_vcf -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 4 2489.34 215.5 2467.39 208.76 2436.53 199.28 2412.71 191.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2413.46 189.64 2406.05 189.92 2412.02 194.32 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2465.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="2465.5,202.5",
		pos="e,2404.6,189.48 2489.3,215.5 2467.4,208.76 2436.5,199.28 2412.7,191.97"];
	add_transcript_expression_data_to_vcf -> pvacseq	[_draw_="c 7 -#000000 B 7 2304.54 125.55 2286.16 119.38 2259.81 111.51 2236 108 2142.69 94.25 1480.06 91.58 1296.2 91.1 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1296.34 88.65 1289.33 91.08 1296.32 93.55 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2293 110.6 0 38 10 -input_file ",
		label=input_file,
		lp="2293,112.5",
		pos="e,1287.8,91.077 2304.5,125.55 2286.2,119.38 2259.8,111.51 2236,108 2142.7,94.249 1480.1,91.577 1296.2,91.098"];
	tumor_rna_bam_readcount -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 4 2646.19 260.5 2620.5 253.64 2584.22 243.95 2556.64 236.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2557.6 234.31 2550.2 234.87 2556.34 239.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2651 245.6 0 80 17 -bam_readcount_tsv ",
		label=bam_readcount_tsv,
		lp="2651,247.5",
		pos="e,2548.7,234.48 2646.2,260.5 2620.5,253.64 2584.2,243.95 2556.6,236.59"];
	default1	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 2360 215.5 2360 234.5 2410 234.5 2410 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2385 222.5 0 34 6 -\"gene\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"gene\"",
		pos="2385,225",
		rects="2360,215.5,2410,234.5",
		width=0.69444];
	default1 -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 7 2376.91 215.65 2374.91 213.07 2373.05 210.1 2372 207 2370.97 203.95 2370.87 200.62 2371.29 197.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2373.61 198.2 2372.89 190.82 2368.85 197.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2392.5 200.6 0 41 9 -data_type ",
		label=data_type,
		lp="2392.5,202.5",
		pos="e,2373.2,189.35 2376.9,215.65 2374.9,213.07 2373,210.1 2372,207 2371,203.95 2370.9,200.62 2371.3,197.39"];
	default2	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 2505.5 260.5 2505.5 279.5 2552.5 279.5 2552.5 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2529 267.5 0 31 5 -\"RNA\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"RNA\"",
		pos="2529,270",
		rects="2505.5,260.5,2552.5,279.5",
		width=0.65278];
	default2 -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 2520.91 260.65 2518.91 258.07 2517.05 255.1 2516 252 2515.01 249.09 2514.62 245.89 2514.58 242.76 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2517.01 243.08 2515.07 235.93 2512.13 242.73 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2536.5 245.6 0 41 9 -data_type ",
		label=data_type,
		lp="2536.5,247.5",
		pos="e,2515.2,234.42 2520.9,260.65 2518.9,258.07 2517,255.1 2516,252 2515,249.09 2514.6,245.89 2514.6,242.76"];
	default3	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 2453 170.5 2453 189.5 2525 189.5 2525 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2489 177.5 0 56 12 -\"transcript\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"transcript\"",
		pos="2489,180",
		rects="2453,170.5,2525,189.5",
		width=1];
	default3 -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 4 2457.19 170.5 2431.5 163.64 2395.22 153.95 2367.64 146.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2368.6 144.31 2361.2 144.87 2367.34 149.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2442.5 155.6 0 41 9 -data_type ",
		label=data_type,
		lp="2442.5,157.5",
		pos="e,2359.7,144.48 2457.2,170.5 2431.5,163.64 2395.2,153.95 2367.6,146.59"];
}