digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 323 2006 323 2006 0 ",
		bb="0,0,2006,323",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 260 8 315 1998 315 1998 260 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 303 0 84 15 -Workflow Inputs ",
			bb="8,260,1998,315",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,305.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		kallisto_index	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 268.5 16 287.5 100 287.5 100 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 58 275.5 0 68 14 -kallisto_index ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=kallisto_index,
			pos="58,278",
			rects="16,268.5,100,287.5",
			width=1.1667];
		strand	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1578.5 268.5 1578.5 287.5 1625.5 287.5 1625.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1602 275.5 0 31 6 -strand ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=strand,
			pos="1602,278",
			rects="1578.5,268.5,1625.5,287.5",
			width=0.65278];
		assembly	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1755 268.5 1755 287.5 1819 287.5 1819 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1787 275.5 0 48 8 -assembly ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=assembly,
			pos="1787,278",
			rects="1755,268.5,1819,287.5",
			width=0.88889];
		sample_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 326 268.5 326 287.5 412 287.5 412 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 369 275.5 0 70 11 -sample_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=sample_name,
			pos="369,278",
			rects="326,268.5,412,287.5",
			width=1.1944];
		instrument_data_bams	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1016.5 268.5 1016.5 287.5 1145.5 287.5 1145.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1081 275.5 0 113 20 -instrument_data_bams ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=instrument_data_bams,
			pos="1081,278",
			rects="1016.5,268.5,1145.5,287.5",
			width=1.7917];
		trimming_adapter_min_overlap	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1150 268.5 1150 287.5 1320 287.5 1320 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1235 275.5 0 154 28 -trimming_adapter_min_overlap ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_adapter_min_overlap,
			pos="1235,278",
			rects="1150,268.5,1320,287.5",
			width=2.3611];
		gene_transcript_lookup_table	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 162 268.5 162 287.5 322 287.5 322 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 242 275.5 0 144 28 -gene_transcript_lookup_table ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=gene_transcript_lookup_table,
			pos="242,278",
			rects="162,268.5,322,287.5",
			width=2.2222];
		read_group_fields	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1324.5 268.5 1324.5 287.5 1427.5 287.5 1427.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1376 275.5 0 87 17 -read_group_fields ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=read_group_fields,
			pos="1376,278",
			rects="1324.5,268.5,1427.5,287.5",
			width=1.4306];
		trimming_min_readlength	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1431.5 268.5 1431.5 287.5 1574.5 287.5 1574.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1503 275.5 0 127 23 -trimming_min_readlength ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_min_readlength,
			pos="1503,278",
			rects="1431.5,268.5,1574.5,287.5",
			width=1.9861];
		ribosomal_intervals	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1823.5 268.5 1823.5 287.5 1936.5 287.5 1936.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1880 275.5 0 97 19 -ribosomal_intervals ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=ribosomal_intervals,
			pos="1880,278",
			rects="1823.5,268.5,1936.5,287.5",
			width=1.5694];
		reference_index	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 416.5 268.5 416.5 287.5 511.5 287.5 511.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 464 275.5 0 79 15 -reference_index ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_index,
			pos="464,278",
			rects="416.5,268.5,511.5,287.5",
			width=1.3194];
		reference_annotation	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1629.5 268.5 1629.5 287.5 1750.5 287.5 1750.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1690 275.5 0 105 20 -reference_annotation ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_annotation,
			pos="1690,278",
			rects="1629.5,268.5,1750.5,287.5",
			width=1.6806];
		trimming_max_uncalled	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 515.5 268.5 515.5 287.5 650.5 287.5 650.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 583 275.5 0 119 21 -trimming_max_uncalled ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_max_uncalled,
			pos="583,278",
			rects="515.5,268.5,650.5,287.5",
			width=1.875];
		read_group_id	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 655 268.5 655 287.5 741 287.5 741 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 698 275.5 0 70 13 -read_group_id ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=read_group_id,
			pos="698,278",
			rects="655,268.5,741,287.5",
			width=1.1944];
		trimming_adapters	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 745 268.5 745 287.5 855 287.5 855 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 800 275.5 0 94 17 -trimming_adapters ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_adapters,
			pos="800,278",
			rects="745,268.5,855,287.5",
			width=1.5278];
		trimming_adapter_trim_end	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 859.5 268.5 859.5 287.5 1012.5 287.5 1012.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 936 275.5 0 137 25 -trimming_adapter_trim_end ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_adapter_trim_end,
			pos="936,278",
			rects="859.5,268.5,1012.5,287.5",
			width=2.125];
		species	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 104.5 268.5 104.5 287.5 157.5 287.5 157.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 131 275.5 0 37 7 -species ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=species,
			pos="131,278",
			rects="104.5,268.5,157.5,287.5",
			width=0.73611];
		refFlat	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1940.5 268.5 1940.5 287.5 1989.5 287.5 1989.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1965 275.5 0 33 7 -refFlat ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=refFlat,
			pos="1965,278",
			rects="1940.5,268.5,1989.5,287.5",
			width=0.68056];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 779 8 779 63 1759 63 1759 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 833 15 0 92 16 -Workflow Outputs ",
			bb="779,8,1759,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="833,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		stringtie_transcript_gtf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1451 35.5 1451 54.5 1579 54.5 1579 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1515 42.5 0 112 24 -stringtie_transcript_gtf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=stringtie_transcript_gtf,
			pos="1515,45",
			rects="1451,35.5,1579,54.5",
			width=1.7778];
		transcript_abundance_h5	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1037.5 35.5 1037.5 54.5 1176.5 54.5 1176.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1107 42.5 0 123 23 -transcript_abundance_h5 ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=transcript_abundance_h5,
			pos="1107,45",
			rects="1037.5,35.5,1176.5,54.5",
			width=1.9306];
		metrics	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1697.5 35.5 1697.5 54.5 1750.5 54.5 1750.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1724 42.5 0 37 7 -metrics ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=metrics,
			pos="1724,45",
			rects="1697.5,35.5,1750.5,54.5",
			width=0.73611];
		final_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1583.5 35.5 1583.5 54.5 1648.5 54.5 1648.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1616 42.5 0 49 9 -final_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=final_bam,
			pos="1616,45",
			rects="1583.5,35.5,1648.5,54.5",
			width=0.90278];
		gene_abundance	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 787.5 35.5 787.5 54.5 886.5 54.5 886.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 837 42.5 0 83 14 -gene_abundance ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=gene_abundance,
			pos="837,45",
			rects="787.5,35.5,886.5,54.5",
			width=1.375];
		fusion_evidence	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1181 35.5 1181 54.5 1277 54.5 1277 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1229 42.5 0 80 15 -fusion_evidence ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=fusion_evidence,
			pos="1229,45",
			rects="1181,35.5,1277,54.5",
			width=1.3333];
		stringtie_gene_expression_tsv	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1281.5 35.5 1281.5 54.5 1446.5 54.5 1446.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1364 42.5 0 149 29 -stringtie_gene_expression_tsv ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=stringtie_gene_expression_tsv,
			pos="1364,45",
			rects="1281.5,35.5,1446.5,54.5",
			width=2.2917];
		transcript_abundance_tsv	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 891 35.5 891 54.5 1033 54.5 1033 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 962 42.5 0 126 24 -transcript_abundance_tsv ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=transcript_abundance_tsv,
			pos="962,45",
			rects="891,35.5,1033,54.5",
			width=1.9722];
		chart	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1652.5 35.5 1652.5 54.5 1693.5 54.5 1693.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1673 42.5 0 25 5 -chart ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=chart,
			pos="1673,45",
			rects="1652.5,35.5,1693.5,54.5",
			width=0.56944];
	}
	kallisto	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1036.5 125.5 1036.5 144.5 1125.5 144.5 1125.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1081 132.5 0 73 15 -Kallisto: Quant ",
		height=0.27778,
		label="Kallisto: Quant",
		pos="1081,135",
		rects="1036.5,125.5,1125.5,144.5",
		width=1.2361];
	kallisto_index -> kallisto	[_draw_="c 7 -#000000 B 7 77.84 268.54 85.84 265.43 95.23 262.15 104 260 194.42 237.86 838.04 163.65 1028.21 141.99 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1028.47 144.42 1035.15 141.2 1027.92 139.55 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 573.5 200.6 0 55 14 -kallisto_index ",
		label=kallisto_index,
		lp="573.5,202.5",
		pos="e,1036.7,141.03 77.843,268.54 85.841,265.43 95.234,262.15 104,260 194.42,237.86 838.04,163.65 1028.2,141.99"];
	bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 961 215.5 961 234.5 1201 234.5 1201 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1081 222.5 0 224 42 -bam to trimmed fastqs and HISAT alignments ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="bam to trimmed fastqs and HISAT alignments",
		pos="1081,225",
		rects="961,215.5,1201,234.5",
		width=3.3333];
	strand -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 1591.61 268.65 1586.84 265.32 1580.93 261.83 1575 260 1529.96 246.08 1407.44 267.75 1363 252 1356.72 249.77 1357.26 \
245.31 1351 243 1325.01 233.42 1265.65 229.06 1209.19 227.14 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1209.48 224.7 1202.4 226.92 1209.32 229.6 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1376.5 245.6 0 27 6 -strand ",
		label=strand,
		lp="1376.5,247.5",
		pos="e,1200.9,226.88 1591.6,268.65 1586.8,265.32 1580.9,261.83 1575,260 1530,246.08 1407.4,267.75 1363,252 1356.7,249.77 1357.3,245.31 \
1351,243 1325,233.42 1265.7,229.06 1209.2,227.14"];
	generate_qc_metrics	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1678 80.5 1678 99.5 1812 99.5 1812 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1745 87.5 0 118 23 -Picard: RNA Seq Metrics ",
		height=0.27778,
		label="Picard: RNA Seq Metrics",
		pos="1745,90",
		rects="1678,80.5,1812,99.5",
		width=1.8611];
	strand -> generate_qc_metrics	[_draw_="c 7 -#000000 B 10 1612.46 268.51 1621.41 261.39 1634.75 251.11 1647 243 1686.35 216.95 1714.16 230.12 1739 190 1754.63 164.75 1751.92 \
128.58 1748.49 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1750.93 107.41 1747.25 100.97 1746.12 108.3 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1760.5 178.1 0 27 6 -strand ",
		label=strand,
		lp="1760.5,180",
		pos="e,1747,99.479 1612.5,268.51 1621.4,261.39 1634.8,251.11 1647,243 1686.3,216.95 1714.2,230.12 1739,190 1754.6,164.75 1751.9,128.58 \
1748.5,107.67"];
	strand -> kallisto	[_draw_="c 7 -#000000 B 13 1591.34 268.51 1586.61 265.23 1580.81 261.84 1575 260 1541.05 249.28 1448.4 264.32 1415 252 1378.14 238.4 1380.48 \
214.87 1345 198 1276.05 165.21 1188.51 149.08 1133.61 141.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1134.17 139.27 1126.92 140.79 1133.54 144.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1372.5 200.6 0 27 6 -strand ",
		label=strand,
		lp="1372.5,202.5",
		pos="e,1125.4,140.59 1591.3,268.51 1586.6,265.23 1580.8,261.84 1575,260 1541.1,249.28 1448.4,264.32 1415,252 1378.1,238.4 1380.5,214.87 \
1345,198 1276,165.21 1188.5,149.08 1133.6,141.67"];
	stringtie	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1406 80.5 1406 99.5 1466 99.5 1466 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1436 87.5 0 44 9 -StringTie ",
		height=0.27778,
		label=StringTie,
		pos="1436,90",
		rects="1406,80.5,1466,99.5",
		width=0.83333];
	strand -> stringtie	[_draw_="c 7 -#000000 B 13 1590.65 268.62 1586 265.52 1580.43 262.22 1575 260 1542.16 246.57 1419 261.48 1419 226 1419 226 1419 226 1419 \
134 1419 124.47 1422.66 114.53 1426.58 106.61 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1428.7 107.84 1429.9 100.52 1424.4 105.49 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1432.5 178.1 0 27 6 -strand ",
		label=strand,
		lp="1432.5,180",
		pos="e,1430.6,99.187 1590.7,268.62 1586,265.52 1580.4,262.22 1575,260 1542.2,246.57 1419,261.48 1419,226 1419,226 1419,226 1419,134 1419,\
124.47 1422.7,114.53 1426.6,106.61"];
	sample_name -> stringtie	[_draw_="c 7 -#000000 B 10 389.79 268.53 397.87 265.49 407.26 262.26 416 260 726.29 179.58 811.91 198.23 1128 145 1225.46 128.59 1340.06 \
108.21 1398.14 97.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1398.34 100.26 1404.8 96.61 1397.48 95.44 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 987 178.1 0 58 11 -sample_name ",
		label=sample_name,
		lp="987,180",
		pos="e,1406.3,96.346 389.79,268.53 397.87,265.49 407.26,262.26 416,260 726.29,179.58 811.91,198.23 1128,145 1225.5,128.59 1340.1,108.21 \
1398.1,97.806"];
	instrument_data_bams -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 4 1081 268.58 1081 261.52 1081 251.24 1081 242.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1083.45 242.78 1081 235.78 1078.55 242.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1090.5 245.6 0 19 3 -bam ",
		label=bam,
		lp="1090.5,247.5",
		pos="e,1081,234.26 1081,268.58 1081,261.52 1081,251.24 1081,242.55"];
	trimming_adapter_min_overlap -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 7 1191.12 268.52 1157.64 261.96 1116.65 253.73 1113 252 1111.07 251.09 1103.97 245.36 1096.95 239.52 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1098.78 237.85 1091.84 235.23 1095.63 241.61 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1156 245.6 0 86 19 -adapter_min_overlap ",
		label=adapter_min_overlap,
		lp="1156,247.5",
		pos="e,1090.7,234.26 1191.1,268.52 1157.6,261.96 1116.7,253.73 1113,252 1111.1,251.09 1104,245.36 1097,239.52"];
	transcript_to_gene	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 765.5 80.5 765.5 99.5 908.5 99.5 908.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 837 87.5 0 127 26 -Kallisto: TranscriptToGene ",
		height=0.27778,
		label="Kallisto: TranscriptToGene",
		pos="837,90",
		rects="765.5,80.5,908.5,99.5",
		width=1.9861];
	gene_transcript_lookup_table -> transcript_to_gene	[_draw_="c 7 -#000000 B 10 283.16 268.55 351.99 254.39 483 227.26 483 226 483 226 483 226 483 134 483 106.54 653.08 96.49 757.46 92.9 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 757.36 95.36 764.28 92.68 757.2 90.46 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 543.5 178.1 0 121 28 -gene_transcript_lookup_table ",
		label=gene_transcript_lookup_table,
		lp="543.5,180",
		pos="e,765.79,92.627 283.16,268.55 351.99,254.39 483,227.26 483,226 483,226 483,226 483,134 483,106.54 653.08,96.486 757.46,92.904"];
	read_group_fields -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 1352.74 268.52 1343.06 265.32 1331.61 261.99 1321 260 1271.51 250.73 1255.17 269.6 1208 252 1201.75 249.67 1202.15 \
245.57 1196 243 1190.11 240.54 1183.91 238.43 1177.58 236.62 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1178.36 234.29 1170.97 234.87 1177.11 239.03 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1244.5 245.6 0 73 17 -read_group_fields ",
		label=read_group_fields,
		lp="1244.5,247.5",
		pos="e,1169.5,234.48 1352.7,268.52 1343.1,265.32 1331.6,261.99 1321,260 1271.5,250.73 1255.2,269.6 1208,252 1201.8,249.67 1202.2,245.57 \
1196,243 1190.1,240.54 1183.9,238.43 1177.6,236.62"];
	trimming_min_readlength -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 1471.1 268.55 1457.86 265.36 1442.28 262.02 1428 260 1397.58 255.7 1318.85 262.55 1290 252 1283.74 249.71 1284.23 \
245.38 1278 243 1264.37 237.79 1238.07 234.17 1209.02 231.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1209.44 229.23 1202.27 231.1 1209.04 234.11 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1322 245.6 0 64 14 -min_readlength ",
		label=min_readlength,
		lp="1322,247.5",
		pos="e,1200.8,230.97 1471.1,268.55 1457.9,265.36 1442.3,262.02 1428,260 1397.6,255.7 1318.8,262.55 1290,252 1283.7,249.71 1284.2,245.38 \
1278,243 1264.4,237.79 1238.1,234.17 1209,231.65"];
	ribosomal_intervals -> generate_qc_metrics	[_draw_="c 7 -#000000 B 10 1866.08 268.76 1853.19 259.95 1836 244.71 1836 226 1836 226 1836 226 1836 134 1836 118.67 1825.32 108.8 1811.27 \
102.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1812.48 100.29 1805.07 99.99 1810.67 104.84 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1876 178.1 0 80 19 -ribosomal_intervals ",
		label=ribosomal_intervals,
		lp="1876,180",
		pos="e,1803.7,99.433 1866.1,268.76 1853.2,259.95 1836,244.71 1836,226 1836,226 1836,226 1836,134 1836,118.67 1825.3,108.8 1811.3,102.45"];
	reference_index -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 485.41 268.5 494.67 265.23 505.71 261.83 516 260 540.3 255.68 715.67 262.52 738 252 742.84 249.72 741.17 245.32 \
746 243 764.69 234.03 866.25 229.78 952.7 227.77 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 952.56 230.23 959.5 227.62 952.45 225.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 779 245.6 0 66 15 -reference_index ",
		label=reference_index,
		lp="779,247.5",
		pos="e,961.01,227.59 485.41,268.5 494.67,265.23 505.71,261.83 516,260 540.3,255.68 715.67,262.52 738,252 742.84,249.72 741.17,245.32 \
746,243 764.69,234.03 866.25,229.78 952.7,227.77"];
	reference_annotation -> stringtie	[_draw_="c 7 -#000000 B 10 1680.79 268.61 1671.95 260.96 1657.91 249.83 1644 243 1566.46 204.93 1516 253.1 1457 190 1445.99 178.23 1439.98 \
132.48 1437.45 107.5 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1439.92 107.59 1436.82 100.85 1435.04 108.05 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1501.5 178.1 0 89 20 -reference_annotation ",
		label=reference_annotation,
		lp="1501.5,180",
		pos="e,1436.7,99.342 1680.8,268.61 1671.9,260.96 1657.9,249.83 1644,243 1566.5,204.93 1516,253.1 1457,190 1446,178.23 1440,132.48 1437.5,\
107.5"];
	trimming_max_uncalled -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 613.25 268.57 626.03 265.34 641.14 261.97 655 260 689.81 255.05 781.3 267.21 813 252 817.83 249.68 816.19 245.35 \
821 243 833.44 236.92 893.5 232.76 952.76 230.08 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 952.72 232.54 959.6 229.78 952.5 227.64 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 849.5 245.6 0 57 12 -max_uncalled ",
		label=max_uncalled,
		lp="849.5,247.5",
		pos="e,961.12,229.72 613.25,268.57 626.03,265.34 641.14,261.97 655,260 689.81,255.05 781.3,267.21 813,252 817.83,249.68 816.19,245.35 \
821,243 833.44,236.92 893.5,232.76 952.76,230.08"];
	read_group_id -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 717.3 268.6 725.66 265.34 735.65 261.93 745 260 774.22 253.98 852.16 265.03 879 252 883.81 249.66 882.22 245.4 \
887 243 899.61 236.66 924.64 232.65 952.64 230.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 952.73 232.57 959.5 229.54 952.32 227.69 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 916 245.6 0 58 13 -read_group_id ",
		label=read_group_id,
		lp="916,247.5",
		pos="e,961.01,229.41 717.3,268.6 725.66,265.34 735.65,261.93 745,260 774.22,253.98 852.16,265.03 879,252 883.81,249.66 882.22,245.4 887,\
243 899.61,236.66 924.64,232.65 952.64,230.12"];
	trimming_adapters -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 825.3 268.57 835.64 265.43 847.79 262.11 859 260 878.08 256.41 928.67 260.76 946 252 950.78 249.59 949.27 245.51 \
954 243 959.11 240.28 967.4 237.96 977.37 236 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 977.74 238.42 984.19 234.77 976.87 233.6 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 972.5 245.6 0 37 8 -adapters ",
		label=adapters,
		lp="972.5,247.5",
		pos="e,985.68,234.5 825.3,268.57 835.64,265.43 847.79,262.11 859,260 878.08,256.41 928.67,260.76 946,252 950.78,249.59 949.27,245.51 \
954,243 959.11,240.28 967.4,237.96 977.37,236"];
	trimming_adapter_trim_end -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 10 956.17 268.53 966.92 263.89 980.3 257.89 992 252 999.29 248.33 1000.39 245.95 1008 243 1014.28 240.56 1021 238.41 \
1027.73 236.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1028 239 1034.15 234.85 1026.75 234.26 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1044 245.6 0 72 16 -adapter_trim_end ",
		label=adapter_trim_end,
		lp="1044,247.5",
		pos="e,1035.6,234.46 956.17,268.53 966.92,263.89 980.3,257.89 992,252 999.29,248.33 1000.4,245.95 1008,243 1014.3,240.56 1021,238.41 \
1027.7,236.54"];
	refFlat -> generate_qc_metrics	[_draw_="c 7 -#000000 B 10 1961.17 268.53 1957.03 258.57 1951 241.43 1951 226 1951 226 1951 226 1951 134 1951 106.35 1878.97 96.36 1820.09 \
92.82 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1820.52 90.39 1813.39 92.45 1820.25 95.28 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1964.5 178.1 0 27 7 -refFlat ",
		label=refFlat,
		lp="1964.5,180",
		pos="e,1811.9,92.361 1961.2,268.53 1957,258.57 1951,241.43 1951,226 1951,226 1951,226 1951,134 1951,106.35 1879,96.362 1820.1,92.82"];
	transcript_to_gene -> gene_abundance	[_draw_="c 7 -#000000 B 4 837 80.71 837 75.59 837 68.85 837 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 839.45 62.78 837 55.78 834.55 62.78 ",
		pos="e,837,54.265 837,80.709 837,75.593 837,68.848 837,62.666"];
	bam_to_trimmed_fastq_and_hisat_alignments -> kallisto	[_draw_="c 7 -#000000 B 4 1081 215.56 1081 201.14 1081 171.48 1081 152.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1083.45 152.8 1081 145.8 1078.55 152.8 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1094 178.1 0 26 6 -fastqs ",
		label=fastqs,
		lp="1094,180",
		pos="e,1081,144.28 1081,215.56 1081,201.14 1081,171.48 1081,152.73"];
	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1629 170.5 1629 189.5 1739 189.5 1739 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1684 177.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="1684,180",
		rects="1629,170.5,1739,189.5",
		width=1.5278];
	bam_to_trimmed_fastq_and_hisat_alignments -> merge	[_draw_="c 7 -#000000 B 7 1147.16 215.51 1196.17 209.57 1264.64 202.01 1325 198 1455.36 189.33 1490.71 201.35 1621.96 190.21 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1622.07 192.66 1628.83 189.61 1621.64 187.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1336.5 200.6 0 23 4 -bams ",
		label=bams,
		lp="1336.5,202.5",
		pos="e,1630.3,189.48 1147.2,215.51 1196.2,209.57 1264.6,202.01 1325,198 1455.4,189.33 1490.7,201.35 1622,190.21"];
	generate_qc_metrics -> metrics	[_draw_="c 7 -#000000 B 4 1740.95 80.71 1738.34 75.36 1734.85 68.22 1731.72 61.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1733.97 60.84 1728.7 55.63 1729.57 62.99 ",
		pos="e,1728,54.265 1741,80.709 1738.3,75.355 1734.9,68.217 1731.7,61.807"];
	generate_qc_metrics -> chart	[_draw_="c 7 -#000000 B 7 1729.13 80.69 1719.92 75.75 1708.17 69.25 1698 63 1695.9 61.71 1693.74 60.32 1691.6 58.92 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1692.99 56.9 1685.81 55.03 1690.25 60.97 ",
		pos="e,1684.6,54.182 1729.1,80.689 1719.9,75.751 1708.2,69.251 1698,63 1695.9,61.711 1693.7,60.325 1691.6,58.919"];
	mark_dup	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1506 125.5 1506 144.5 1644 144.5 1644 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1575 132.5 0 122 24 -Mark duplicates and Sort ",
		height=0.27778,
		label="Mark duplicates and Sort",
		pos="1575,135",
		rects="1506,125.5,1644,144.5",
		width=1.9167];
	mark_dup -> final_bam	[_draw_="c 7 -#000000 B 4 1578.93 125.56 1585.74 110.94 1599.85 80.66 1608.56 61.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1610.77 63.04 1611.5 55.66 1606.32 60.97 ",
		pos="e,1612.1,54.284 1578.9,125.56 1585.7,110.94 1599.9,80.661 1608.6,61.962"];
	mark_dup -> stringtie	[_draw_="c 7 -#000000 B 4 1547.54 125.5 1525.74 118.76 1495.1 109.28 1471.45 101.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1472.26 99.65 1464.85 99.93 1470.81 104.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1526.5 110.6 0 19 3 -bam ",
		label=bam,
		lp="1526.5,112.5",
		pos="e,1463.4,99.478 1547.5,125.5 1525.7,118.76 1495.1,109.28 1471.5,101.97"];
	kallisto -> transcript_abundance_h5	[_draw_="c 7 -#000000 B 4 1083.49 125.56 1087.79 111 1096.68 80.93 1102.21 62.22 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1104.49 63.14 1104.12 55.74 1099.79 61.75 ",
		pos="e,1104.6,54.284 1083.5,125.56 1087.8,111 1096.7,80.933 1102.2,62.216"];
	kallisto -> fusion_evidence	[_draw_="c 7 -#000000 B 4 1095.19 125.56 1121.34 110.02 1177.23 76.78 1207.86 58.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1209 60.74 1213.77 55.06 1206.5 56.53 ",
		pos="e,1215.1,54.284 1095.2,125.56 1121.3,110.02 1177.2,76.78 1207.9,58.57"];
	kallisto -> transcript_abundance_tsv	[_draw_="c 7 -#000000 B 4 1069.59 125.56 1048.83 110.21 1004.76 77.62 979.95 59.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 981.5 57.38 974.42 55.18 978.59 61.32 ",
		pos="e,973.2,54.284 1069.6,125.56 1048.8,110.21 1004.8,77.622 979.95,59.271"];
	kallisto -> transcript_to_gene	[_draw_="c 7 -#000000 B 7 1036.64 130.27 1008.28 127.5 970.81 123.14 938 117 916.45 112.96 892.69 106.93 873.63 101.69 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 874.36 99.35 866.96 99.83 873.05 104.07 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 977.5 110.6 0 79 19 -transcript_table_h5 ",
		label=transcript_table_h5,
		lp="977.5,112.5",
		pos="e,865.5,99.425 1036.6,130.27 1008.3,127.5 970.81,123.14 938,117 916.45,112.96 892.69,106.93 873.63,101.69"];
	index_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1648 125.5 1648 144.5 1740 144.5 1740 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1694 132.5 0 76 14 -samtools index ",
		height=0.27778,
		label="samtools index",
		pos="1694,135",
		rects="1648,125.5,1740,144.5",
		width=1.2778];
	index_bam -> generate_qc_metrics	[_draw_="c 7 -#000000 B 7 1703.39 125.72 1709.27 120.57 1717.03 113.84 1724 108 1725.4 106.83 1726.86 105.61 1728.34 104.4 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1729.63 106.51 1733.52 100.19 1726.54 102.71 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1733.5 110.6 0 19 3 -bam ",
		label=bam,
		lp="1733.5,112.5",
		pos="e,1734.7,99.232 1703.4,125.72 1709.3,120.57 1717,113.84 1724,108 1725.4,106.83 1726.9,105.61 1728.3,104.4"];
	stringtie -> stringtie_transcript_gtf	[_draw_="c 7 -#000000 B 4 1451.61 80.5 1463.19 74.2 1479.15 65.51 1492.16 58.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1493.12 60.7 1498.1 55.2 1490.78 56.4 ",
		pos="e,1499.4,54.478 1451.6,80.505 1463.2,74.203 1479.1,65.514 1492.2,58.432"];
	stringtie -> stringtie_gene_expression_tsv	[_draw_="c 7 -#000000 B 4 1421.78 80.5 1411.42 74.32 1397.22 65.84 1385.48 58.83 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1386.76 56.74 1379.49 55.25 1384.25 60.95 ",
		pos="e,1378.2,54.478 1421.8,80.505 1411.4,74.321 1397.2,65.838 1385.5,58.83"];
	merge -> mark_dup	[_draw_="c 7 -#000000 B 7 1674.88 170.56 1668.19 164.8 1658.62 157.44 1649 153 1643.93 150.66 1638.52 148.63 1633.01 146.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1633.76 144.54 1626.36 144.91 1632.38 149.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1672.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="1672.5,157.5",
		pos="e,1624.9,144.48 1674.9,170.56 1668.2,164.8 1658.6,157.44 1649,153 1643.9,150.66 1638.5,148.63 1633,146.87"];
	merge -> index_bam	[_draw_="c 7 -#000000 B 4 1685.93 170.71 1687.15 165.47 1688.76 158.53 1690.22 152.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1692.54 153.11 1691.73 145.74 1687.76 152 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1698.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="1698.5,157.5",
		pos="e,1692.1,144.27 1685.9,170.71 1687.1,165.47 1688.8,158.53 1690.2,152.24"];
	default1	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 1547.5 170.5 1547.5 189.5 1624.5 189.5 1624.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1586 177.5 0 61 12 -\"coordinate\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"coordinate\"",
		pos="1586,180",
		rects="1547.5,170.5,1624.5,189.5",
		width=1.0694];
	default1 -> mark_dup	[_draw_="c 7 -#000000 B 4 1583.88 170.71 1582.54 165.47 1580.76 158.53 1579.15 152.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1581.6 151.91 1577.49 145.73 1576.85 153.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1614.5 155.6 0 67 16 -input_sort_order ",
		label=input_sort_order,
		lp="1614.5,157.5",
		pos="e,1577.1,144.27 1583.9,170.71 1582.5,165.47 1580.8,158.53 1579.2,152.24"];
}