digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 593 436 593 436 0 ",
		bb="0,0,436,593",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 24 530 24 585 415 585 415 530 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 74 573 0 84 15 -Workflow Inputs ",
			bb="24,530,415,585",
			label="Workflow Inputs",
			lheight=0.15,
			lp="74,575.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		insert_size	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 260.5 538.5 260.5 557.5 329.5 557.5 329.5 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 295 545.5 0 53 11 -insert_size ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=insert_size,
			pos="295,548",
			rects="260.5,538.5,329.5,557.5",
			width=0.95833];
		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 32.5 538.5 32.5 557.5 95.5 557.5 95.5 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 64 545.5 0 47 9 -reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference,
			pos="64,548",
			rects="32.5,538.5,95.5,557.5",
			width=0.875];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 333.5 538.5 333.5 557.5 406.5 557.5 406.5 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 370 545.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="370,548",
			rects="333.5,538.5,406.5,557.5",
			width=1.0139];
		interval_list	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 100 538.5 100 557.5 174 557.5 174 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 137 545.5 0 58 13 -interval_list ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=interval_list,
			pos="137,548",
			rects="100,538.5,174,557.5",
			width=1.0278];
		normal_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 178 538.5 178 557.5 256 557.5 256 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 217 545.5 0 62 10 -normal_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_bam,
			pos="217,548",
			rects="178,538.5,256,557.5",
			width=1.0833];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 39 8 39 63 214 63 214 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 93 15 0 92 16 -Workflow Outputs ",
			bb="39,8,214,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="93,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		filtered_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 47.5 35.5 47.5 54.5 118.5 54.5 118.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 83 42.5 0 55 12 -filtered_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=filtered_vcf,
			pos="83,45",
			rects="47.5,35.5,118.5,54.5",
			width=0.98611];
		unfiltered_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 122.5 35.5 122.5 54.5 205.5 54.5 205.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 164 42.5 0 67 14 -unfiltered_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=unfiltered_vcf,
			pos="164,45",
			rects="122.5,35.5,205.5,54.5",
			width=1.1528];
	}
	pindel_cat	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 181.5 440.5 181.5 459.5 314.5 459.5 314.5 440.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 248 447.5 0 117 21 -Per-chromosome pindel ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="Per-chromosome pindel",
		pos="248,450",
		rects="181.5,440.5,314.5,459.5",
		width=1.8472];
	insert_size -> pindel_cat	[_draw_="c 7 -#000000 B 7 298.36 538.79 302.88 526.33 309.35 502.29 300 485 295.03 475.81 286.37 468.71 277.53 463.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 278.79 461.32 271.47 460.14 276.46 465.63 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 326 493.1 0 44 11 -insert_size ",
		label=insert_size,
		lp="326,495",
		pos="e,270.14,459.41 298.36,538.79 302.88,526.33 309.35,502.29 300,485 295.03,475.81 286.37,468.71 277.53,463.43"];
	filter	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 46.5 80.5 46.5 99.5 147.5 99.5 147.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 97 87.5 0 85 18 -fp_filter workflow ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="fp_filter workflow",
		pos="97,90",
		rects="46.5,80.5,147.5,99.5",
		width=1.4028];
	reference -> filter	[_draw_="c 7 -#000000 B 10 39.44 538.66 21.39 530.79 0 517.03 0 496 0 496 0 496 0 134 0 113.75 17.88 102.97 38.29 97.25 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 38.83 99.64 45.04 95.59 37.66 94.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 20 313.1 0 40 9 -reference ",
		label=reference,
		lp="20,315",
		pos="e,46.511,95.228 39.439,538.66 21.391,530.79 0,517.03 0,496 0,496 0,496 0,134 0,113.75 17.88,102.97 38.287,97.247"];
	somaticfilter	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 104.5 350.5 104.5 369.5 233.5 369.5 233.5 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 169 357.5 0 113 24 -pindel somatic filter v1 ",
		height=0.27778,
		label="pindel somatic filter v1",
		pos="169,360",
		rects="104.5,350.5,233.5,369.5",
		width=1.7917];
	reference -> somaticfilter	[_draw_="c 7 -#000000 B 10 61.06 538.55 54.98 519.55 43.05 472.55 61 440 82.32 401.34 111.07 415.24 145 387 149.11 383.58 153.21 379.47 156.82 \
375.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 158.57 377.27 161.36 370.4 154.89 374.03 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 81 448.1 0 40 9 -reference ",
		label=reference,
		lp="81,450",
		pos="e,162.36,369.26 61.056,538.55 54.979,519.55 43.052,472.55 61,440 82.317,401.34 111.07,415.24 145,387 149.11,383.58 153.21,379.47 \
156.82,375.55"];
	region_filter	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 26.5 215.5 26.5 234.5 167.5 234.5 167.5 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 97 222.5 0 125 25 -SelectVariants (GATK 3.6) ",
		height=0.27778,
		label="SelectVariants (GATK 3.6)",
		pos="97,225",
		rects="26.5,215.5,167.5,234.5",
		width=1.9583];
	reference -> region_filter	[_draw_="c 7 -#000000 B 10 59.35 538.62 54.32 528.74 47 511.68 47 496 47 496 47 496 47 269 47 255.76 57.21 245.7 68.4 238.66 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 69.6 240.79 74.48 235.21 67.18 236.53 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 67 380.6 0 40 9 -reference ",
		label=reference,
		lp="67,382.5",
		pos="e,75.795,234.46 59.355,538.62 54.321,528.74 47,511.68 47,496 47,496 47,496 47,269 47,255.76 57.207,245.7 68.397,238.66"];
	reference -> pindel_cat	[_draw_="c 7 -#000000 B 7 63.72 538.81 63.73 525.48 65.84 499.18 81 485 94.67 472.22 135.61 463.76 173.53 458.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 173.45 460.97 180.06 457.61 172.8 456.11 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 101 493.1 0 40 9 -reference ",
		label=reference,
		lp="101,495",
		pos="e,181.56,457.41 63.717,538.81 63.735,525.48 65.839,499.18 81,485 94.668,472.22 135.61,463.76 173.53,458.48"];
	tumor_bam -> filter	[_draw_="c 7 -#000000 B 10 385.39 538.66 399.1 529.99 417 515.02 417 496 417 496 417 496 417 134 417 107.94 248.17 97.05 155.77 93.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 155.96 90.6 148.86 92.75 155.75 95.5 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 426.5 313.1 0 19 3 -bam ",
		label=bam,
		lp="426.5,315",
		pos="e,147.35,92.688 385.39,538.66 399.1,529.99 417,515.02 417,496 417,496 417,496 417,134 417,107.94 248.17,97.052 155.77,93.044"];
	tumor_bam -> pindel_cat	[_draw_="c 7 -#000000 B 7 369.46 538.55 368.17 525.34 363.8 499.77 349 485 338.34 474.36 324.24 467.05 309.97 462.02 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 310.9 459.75 303.49 459.93 309.4 464.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 384 493.1 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="384,495",
		pos="e,302.05,459.46 369.46,538.55 368.17,525.34 363.8,499.77 349,485 338.34,474.36 324.24,467.05 309.97,462.02"];
	get_chromosome_list	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 123 485.5 123 504.5 245 504.5 245 485.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 184 492.5 0 106 19 -get_chromosome_list ",
		height=0.27778,
		label=get_chromosome_list,
		pos="184,495",
		rects="123,485.5,245,504.5",
		width=1.6944];
	interval_list -> get_chromosome_list	[_draw_="c 7 -#000000 B 4 144.76 538.58 151.81 530.93 162.36 519.48 170.74 510.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 172.42 512.19 175.36 505.38 168.81 508.87 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 190.5 515.6 0 47 13 -interval_list ",
		label=interval_list,
		lp="190.5,517.5",
		pos="e,176.38,504.26 144.76,538.58 151.81,530.93 162.36,519.48 170.74,510.39"];
	interval_list -> region_filter	[_draw_="c 7 -#000000 B 10 133.86 538.61 124.43 512.63 97 431.02 97 361 97 361 97 361 97 269 97 260.31 97 250.63 97 242.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 99.45 242.76 97 235.76 94.55 242.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 122.5 380.6 0 47 13 -interval_list ",
		label=interval_list,
		lp="122.5,382.5",
		pos="e,97,234.24 133.86,538.61 124.43,512.63 97,431.02 97,361 97,361 97,361 97,269 97,260.31 97,250.63 97,242.65"];
	normal_bam -> pindel_cat	[_draw_="c 7 -#000000 B 7 224.5 538.72 231.23 530.73 240.68 517.97 245 505 249.04 492.89 249.63 478.42 249.3 467.5 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 251.77 467.67 248.94 460.81 246.87 467.93 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 273.5 493.1 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="273.5,495",
		pos="e,248.86,459.3 224.5,538.72 231.23,530.73 240.68,517.97 245,505 249.04,492.89 249.63,478.42 249.3,467.5"];
	remove_end_tags	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 32.5 170.5 32.5 189.5 161.5 189.5 161.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 97 177.5 0 113 20 -remove END INFO tags ",
		height=0.27778,
		label="remove END INFO tags",
		pos="97,180",
		rects="32.5,170.5,161.5,189.5",
		width=1.7917];
	reindex	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 66 125.5 66 144.5 128 144.5 128 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 97 132.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="97,135",
		rects="66,125.5,128,144.5",
		width=0.86111];
	remove_end_tags -> reindex	[_draw_="c 7 -#000000 B 4 97 170.71 97 165.59 97 158.85 97 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 99.45 152.78 97 145.78 94.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 103.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="103.5,157.5",
		pos="e,97,144.27 97,170.71 97,165.59 97,158.85 97,152.67"];
	bgzip	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 130.5 305.5 130.5 324.5 195.5 324.5 195.5 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 163 312.5 0 49 9 -bgzip VCF ",
		height=0.27778,
		label="bgzip VCF",
		pos="163,315",
		rects="130.5,305.5,195.5,324.5",
		width=0.90278];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 107 260.5 107 279.5 169 279.5 169 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 138 267.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="138,270",
		rects="107,260.5,169,279.5",
		width=0.86111];
	bgzip -> index	[_draw_="c 7 -#000000 B 4 158.18 305.71 155 300.24 150.73 292.9 146.94 286.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 149.2 285.39 143.57 280.57 144.97 287.86 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 158.5 290.6 0 13 3 -vcf ",
		label=vcf,
		lp="158.5,292.5",
		pos="e,142.81,279.27 158.18,305.71 155,300.24 150.73,292.9 146.94,286.38"];
	filter -> filtered_vcf	[_draw_="c 7 -#000000 B 4 94.3 80.71 92.6 75.47 90.34 68.53 88.29 62.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 90.66 61.6 86.16 55.7 86 63.12 ",
		pos="e,85.691,54.265 94.301,80.709 92.596,75.474 90.337,68.534 88.286,62.235"];
	filter -> unfiltered_vcf	[_draw_="c 7 -#000000 B 4 110.24 80.5 119.78 74.38 132.84 66 143.7 59.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 144.95 61.14 149.52 55.3 142.3 57.01 ",
		pos="e,150.79,54.478 110.24,80.505 119.78,74.38 132.84,65.999 143.7,59.031"];
	somaticfilter -> bgzip	[_draw_="c 7 -#000000 B 4 167.84 350.71 167.13 345.59 166.19 338.85 165.33 332.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 167.76 332.36 164.36 325.76 162.9 333.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 172.5 335.6 0 13 4 -file ",
		label=file,
		lp="172.5,337.5",
		pos="e,164.15,324.27 167.84,350.71 167.13,345.59 166.19,338.85 165.33,332.67"];
	get_chromosome_list -> pindel_cat	[_draw_="c 7 -#000000 B 7 185.61 485.67 187.12 479.97 189.93 472.63 195 468 196.81 466.35 198.77 464.86 200.85 463.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 201.97 465.7 206.94 460.2 199.63 461.39 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 222 470.6 0 54 10 -chromosome ",
		label=chromosome,
		lp="222,472.5",
		pos="e,208.27,459.47 185.61,485.67 187.12,479.97 189.93,472.63 195,468 196.81,466.35 198.77,464.86 200.85,463.51"];
	region_filter -> remove_end_tags	[_draw_="c 7 -#000000 B 4 97 215.71 97 210.59 97 203.85 97 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 99.45 197.78 97 190.78 94.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 103.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="103.5,202.5",
		pos="e,97,189.27 97,215.71 97,210.59 97,203.85 97,197.67"];
	cat_all	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 171.5 395.5 171.5 414.5 220.5 414.5 220.5 395.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 196 402.5 0 33 7 -cat_all ",
		height=0.27778,
		label=cat_all,
		pos="196,405",
		rects="171.5,395.5,220.5,414.5",
		width=0.68056];
	cat_all -> somaticfilter	[_draw_="c 7 -#000000 B 4 190.79 395.71 187.36 390.24 182.75 382.9 178.66 376.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 180.79 375.17 174.99 370.55 176.64 377.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 233 380.6 0 98 21 -pindel_output_summary ",
		label=pindel_output_summary,
		lp="233,382.5",
		pos="e,174.19,369.27 190.79,395.71 187.36,390.24 182.75,382.9 178.66,376.38"];
	reindex -> filter	[_draw_="c 7 -#000000 B 4 97 125.71 97 120.59 97 113.85 97 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 99.45 107.78 97 100.78 94.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 103.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="103.5,112.5",
		pos="e,97,99.265 97,125.71 97,120.59 97,113.85 97,107.67"];
	index -> region_filter	[_draw_="c 7 -#000000 B 4 130.09 260.71 124.54 254.88 116.96 246.93 110.46 240.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 112.53 238.74 105.93 235.36 108.98 242.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 127.5 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="127.5,247.5",
		pos="e,104.88,234.27 130.09,260.71 124.54,254.88 116.96,246.93 110.46,240.12"];
	pindel_cat -> cat_all	[_draw_="c 7 -#000000 B 4 237.73 440.5 230.6 434.62 220.96 426.64 212.74 419.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 214.37 418.02 207.42 415.44 211.25 421.79 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 278.5 425.6 0 105 22 -chromosome_pindel_outs ",
		label=chromosome_pindel_outs,
		lp="278.5,427.5",
		pos="e,206.25,414.48 237.73,440.5 230.6,434.62 220.96,426.64 212.74,419.84"];
}