digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 458 522 458 522 0 ",
		bb="0,0,522,458",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 395 8 450 514 450 514 395 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 438 0 84 15 -Workflow Inputs ",
			bb="8,395,514,450",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,440.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 98.5 403.5 98.5 422.5 161.5 422.5 161.5 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 130 410.5 0 47 9 -reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference,
			pos="130,413",
			rects="98.5,403.5,161.5,422.5",
			width=0.875];
		docm_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 166 403.5 166 422.5 230 422.5 230 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 198 410.5 0 48 8 -docm_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=docm_vcf,
			pos="198,413",
			rects="166,403.5,230,422.5",
			width=0.88889];
		normal_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 403.5 16 422.5 94 422.5 94 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 55 410.5 0 62 10 -normal_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_bam,
			pos="55,413",
			rects="16,403.5,94,422.5",
			width=1.0833];
		filter_docm_variants	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 390 403.5 390 422.5 506 422.5 506 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 448 410.5 0 100 20 -filter_docm_variants ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=filter_docm_variants,
			pos="448,413",
			rects="390,403.5,506,422.5",
			width=1.6111];
		interval_list	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 234 403.5 234 422.5 308 422.5 308 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 271 410.5 0 58 13 -interval_list ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=interval_list,
			pos="271,413",
			rects="234,403.5,308,422.5",
			width=1.0278];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 312.5 403.5 312.5 422.5 385.5 422.5 385.5 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 349 410.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="349,413",
			rects="312.5,403.5,385.5,422.5",
			width=1.0139];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 261 8 261 63 387 63 387 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 315 15 0 92 16 -Workflow Outputs ",
			bb="261,8,387,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="315,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		docm_variants_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 269.5 35.5 269.5 54.5 378.5 54.5 378.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 324 42.5 0 93 17 -docm_variants_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=docm_variants_vcf,
			pos="324,45",
			rects="269.5,35.5,378.5,54.5",
			width=1.5139];
	}
	GATK_haplotype_caller	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 124 350.5 124 369.5 274 369.5 274 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 199 357.5 0 134 26 -HaplotypeCaller (GATK 3.6) ",
		height=0.27778,
		label="HaplotypeCaller (GATK 3.6)",
		pos="199,360",
		rects="124,350.5,274,369.5",
		width=2.0833];
	reference -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 7 134.83 403.71 139.62 396.13 147.58 385.04 157 378 159.41 376.2 162.04 374.55 164.76 373.06 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 165.55 375.4 170.77 370.13 163.4 371 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 177 380.6 0 40 9 -reference ",
		label=reference,
		lp="177,382.5",
		pos="e,172.13,369.47 134.83,403.71 139.62,396.13 147.58,385.04 157,378 159.41,376.2 162.04,374.55 164.76,373.06"];
	docm_vcf -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 4 198.17 403.58 198.3 396.52 198.51 386.24 198.68 377.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 201.12 377.82 198.81 370.78 196.22 377.73 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 217.5 380.6 0 39 8 -docm_vcf ",
		label=docm_vcf,
		lp="217.5,382.5",
		pos="e,198.84,369.26 198.17,403.58 198.3,396.52 198.51,386.24 198.68,377.55"];
	normal_bam -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 7 62.35 403.53 69.76 395.58 81.93 384.05 95 378 101.71 374.9 108.89 372.35 116.22 370.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 116.61 372.69 122.76 368.55 115.37 367.95 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 120.5 380.6 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="120.5,382.5",
		pos="e,124.23,368.17 62.352,403.53 69.757,395.58 81.93,384.05 95,378 101.71,374.9 108.89,372.35 116.22,370.26"];
	docm_filter	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 221.5 170.5 221.5 189.5 426.5 189.5 426.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 324 177.5 0 189 38 -Filter variants from the DoCM detector ",
		height=0.27778,
		label="Filter variants from the DoCM detector",
		pos="324,180",
		rects="221.5,170.5,426.5,189.5",
		width=2.8472];
	normal_bam -> docm_filter	[_draw_="c 7 -#000000 B 10 57.63 403.79 60.59 393.8 65 376.34 65 361 65 361 65 361 65 224 65 207.98 143.11 196.59 213.53 189.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 213.4 192.05 220.13 188.93 212.92 187.17 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 90.5 290.6 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="90.5,292.5",
		pos="e,221.64,188.78 57.627,403.79 60.59,393.8 65,376.34 65,361 65,361 65,361 65,224 65,207.98 143.11,196.59 213.53,189.57"];
	filter_docm_variants -> docm_filter	[_draw_="c 7 -#000000 B 10 441.47 403.5 434.67 393.78 425 377.12 425 361 425 361 425 361 425 224 425 208.97 415.41 199.11 402.14 192.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 403.22 190.48 395.82 190.03 401.33 194.99 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 466 290.6 0 82 20 -filter_docm_variants ",
		label=filter_docm_variants,
		lp="466,292.5",
		pos="e,394.42,189.44 441.47,403.5 434.67,393.78 425,377.12 425,361 425,361 425,361 425,224 425,208.97 415.41,199.11 402.14,192.68"];
	interval_list -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 7 264.42 403.54 258.24 396.05 248.41 385.21 238 378 235.48 376.26 232.76 374.63 229.96 373.14 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 231.2 371.01 223.83 370.14 229.04 375.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 271.5 380.6 0 47 13 -interval_list ",
		label=interval_list,
		lp="271.5,382.5",
		pos="e,222.48,369.47 264.42,403.54 258.24,396.05 248.41,385.21 238,378 235.48,376.26 232.76,374.63 229.96,373.14"];
	tumor_bam -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 7 338.72 403.63 328.51 395.76 312.09 384.28 296 378 289.53 375.48 282.67 373.33 275.72 371.49 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 276.37 369.13 268.99 369.85 275.2 373.89 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 322.5 380.6 0 19 3 -bam ",
		label=bam,
		lp="322.5,382.5",
		pos="e,267.52,369.49 338.72,403.63 328.51,395.76 312.09,384.28 296,378 289.53,375.48 282.67,373.33 275.72,371.49"];
	tumor_bam -> docm_filter	[_draw_="c 7 -#000000 B 13 348.47 403.7 347.88 393.61 347 376.06 347 361 347 361 347 361 347 224 347 212.03 345.83 208.45 340 198 339.57 \
197.22 339.09 196.45 338.58 195.69 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 340.66 194.38 334.34 190.5 336.87 197.48 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 370 290.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="370,292.5",
		pos="e,333.38,189.33 348.47,403.7 347.88,393.61 347,376.06 347,361 347,361 347,361 347,224 347,212.03 345.83,208.45 340,198 339.57,197.22 \
339.09,196.45 338.58,195.69"];
	bgzip2	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 291.5 125.5 291.5 144.5 356.5 144.5 356.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 324 132.5 0 49 9 -bgzip VCF ",
		height=0.27778,
		label="bgzip VCF",
		pos="324,135",
		rects="291.5,125.5,356.5,144.5",
		width=0.90278];
	index2	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 293 80.5 293 99.5 355 99.5 355 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 324 87.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="324,90",
		rects="293,80.5,355,99.5",
		width=0.86111];
	bgzip2 -> index2	[_draw_="c 7 -#000000 B 4 324 125.71 324 120.59 324 113.85 324 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 326.45 107.78 324 100.78 321.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 330.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="330.5,112.5",
		pos="e,324,99.265 324,125.71 324,120.59 324,113.85 324,107.67"];
	bgzip	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 204.5 305.5 204.5 324.5 269.5 324.5 269.5 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 237 312.5 0 49 9 -bgzip VCF ",
		height=0.27778,
		label="bgzip VCF",
		pos="237,315",
		rects="204.5,305.5,269.5,324.5",
		width=0.90278];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 210 260.5 210 279.5 272 279.5 272 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 241 267.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="241,270",
		rects="210,260.5,272,279.5",
		width=0.86111];
	bgzip -> index	[_draw_="c 7 -#000000 B 4 237.77 305.71 238.25 300.59 238.87 293.85 239.45 287.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 241.88 287.97 240.09 280.77 237 287.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 245.5 290.6 0 13 3 -vcf ",
		label=vcf,
		lp="245.5,292.5",
		pos="e,240.23,279.27 237.77,305.71 238.25,300.59 238.87,293.85 239.45,287.67"];
	GATK_haplotype_caller -> bgzip	[_draw_="c 7 -#000000 B 4 206.33 350.71 211.37 345 218.21 337.26 224.15 330.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 225.89 332.27 228.69 325.4 222.22 329.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 227.5 335.6 0 13 4 -file ",
		label=file,
		lp="227.5,337.5",
		pos="e,229.7,324.27 206.33,350.71 211.37,345 218.21,337.26 224.15,330.54"];
	index2 -> docm_variants_vcf	[_draw_="c 7 -#000000 B 4 324 80.71 324 75.59 324 68.85 324 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 326.45 62.78 324 55.78 321.55 62.78 ",
		pos="e,324,54.265 324,80.709 324,75.593 324,68.848 324,62.666"];
	decompose	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 206 215.5 206 234.5 310 234.5 310 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 258 222.5 0 88 16 -run vt decompose ",
		height=0.27778,
		label="run vt decompose",
		pos="258,225",
		rects="206,215.5,310,234.5",
		width=1.4444];
	decompose -> docm_filter	[_draw_="c 7 -#000000 B 7 257.83 215.72 258.15 210.03 259.53 202.7 264 198 265.47 196.46 267.07 195.05 268.77 193.77 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 269.82 196 274.47 190.22 267.23 191.84 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 303.5 200.6 0 79 17 -docm_raw_variants ",
		label=docm_raw_variants,
		lp="303.5,202.5",
		pos="e,275.76,189.42 257.83,215.72 258.15,210.03 259.53,202.7 264,198 265.47,196.46 267.07,195.05 268.77,193.77"];
	index -> decompose	[_draw_="c 7 -#000000 B 4 244.28 260.71 246.39 255.36 249.22 248.22 251.75 241.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 253.88 243.08 254.18 235.67 249.32 241.28 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 257.5 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="257.5,247.5",
		pos="e,254.73,234.27 244.28,260.71 246.39,255.36 249.22,248.22 251.75,241.81"];
	docm_filter -> bgzip2	[_draw_="c 7 -#000000 B 4 324 170.71 324 165.59 324 158.85 324 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 326.45 152.78 324 145.78 321.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 330.5 155.6 0 13 4 -file ",
		label=file,
		lp="330.5,157.5",
		pos="e,324,144.27 324,170.71 324,165.59 324,158.85 324,152.67"];
}