digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 233 837 233 837 0 ",
		bb="0,0,837,233",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
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		label="\N",
		shape=record,
		style=filled,
		width=0
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	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
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	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 40 170 40 225 735 225 735 170 ",
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			bb="40,170,735,225",
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			lheight=0.15,
			lp="90,215.5",
			lwidth=1.17,
			rank=same,
			style=dashed
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		drop_low_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 475.5 178.5 475.5 197.5 586.5 197.5 586.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 531 185.5 0 95 17 -drop_low_coverage ",
			fillcolor="#94DDF4",
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			pos="531,188",
			rects="475.5,178.5,586.5,197.5",
			width=1.5417];
		male_reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 152.5 178.5 152.5 197.5 245.5 197.5 245.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 199 185.5 0 77 14 -male_reference ",
			fillcolor="#94DDF4",
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			label=male_reference,
			pos="199,188",
			rects="152.5,178.5,245.5,197.5",
			width=1.2917];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 249.5 178.5 249.5 197.5 322.5 197.5 322.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 286 185.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
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			label=tumor_bam,
			pos="286,188",
			rects="249.5,178.5,322.5,197.5",
			width=1.0139];
		cnvkit_vcf_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 48 178.5 48 197.5 148 197.5 148 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 98 185.5 0 84 15 -cnvkit_vcf_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cnvkit_vcf_name,
			pos="98,188",
			rects="48,178.5,148,197.5",
			width=1.3889];
		scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 591 178.5 591 197.5 665 197.5 665 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 628 185.5 0 58 12 -scatter_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=scatter_plot,
			pos="628,188",
			rects="591,178.5,665,197.5",
			width=1.0278];
		diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 669.5 178.5 669.5 197.5 726.5 197.5 726.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 698 185.5 0 41 7 -diagram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=diagram,
			pos="698,188",
			rects="669.5,178.5,726.5,197.5",
			width=0.79167];
		reference_cnn	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 327 178.5 327 197.5 413 197.5 413 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 370 185.5 0 70 13 -reference_cnn ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_cnn,
			pos="370,188",
			rects="327,178.5,413,197.5",
			width=1.1944];
		method	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 417 178.5 417 197.5 471 197.5 471 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 444 185.5 0 38 6 -method ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=method,
			pos="444,188",
			rects="417,178.5,471,197.5",
			width=0.75];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 8 8 63 829 63 829 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 62 15 0 92 16 -Workflow Outputs ",
			bb="8,8,829,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="62,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		tumor_target_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 373.5 35.5 373.5 54.5 504.5 54.5 504.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 439 42.5 0 115 21 -tumor_target_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_target_coverage,
			pos="439,45",
			rects="373.5,35.5,504.5,54.5",
			width=1.8194];
		cnvkit_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 35.5 16.5 54.5 83.5 54.5 83.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 50 42.5 0 51 10 -cnvkit_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cnvkit_vcf,
			pos="50,45",
			rects="16.5,35.5,83.5,54.5",
			width=0.93056];
		tumor_segmented_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 508.5 35.5 508.5 54.5 647.5 54.5 647.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 578 42.5 0 123 22 -tumor_segmented_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_segmented_ratios,
			pos="578,45",
			rects="508.5,35.5,647.5,54.5",
			width=1.9306];
		cn_scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 651.5 35.5 651.5 54.5 742.5 54.5 742.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 697 42.5 0 75 15 -cn_scatter_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_scatter_plot,
			pos="697,45",
			rects="651.5,35.5,742.5,54.5",
			width=1.2639];
		cn_diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 747 35.5 747 54.5 821 54.5 821 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 784 42.5 0 58 10 -cn_diagram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_diagram,
			pos="784,45",
			rects="747,35.5,821,54.5",
			width=1.0278];
		tumor_bin_level_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 88 35.5 88 54.5 216 54.5 216 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 152 42.5 0 112 22 -tumor_bin_level_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bin_level_ratios,
			pos="152,45",
			rects="88,35.5,216,54.5",
			width=1.7778];
		tumor_antitarget_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 220.5 35.5 220.5 54.5 369.5 54.5 369.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 295 42.5 0 133 25 -tumor_antitarget_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_antitarget_coverage,
			pos="295,45",
			rects="220.5,35.5,369.5,54.5",
			width=2.0694];
	}
	cnvkit_main	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 400.5 125.5 400.5 144.5 477.5 144.5 477.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 439 132.5 0 61 11 -cnvkit_main ",
		height=0.27778,
		label=cnvkit_main,
		pos="439,135",
		rects="400.5,125.5,477.5,144.5",
		width=1.0694];
	drop_low_coverage -> cnvkit_main	[_draw_="c 7 -#000000 B 7 517.6 178.56 506.16 171.47 489.21 161.21 474 153 470.92 151.34 467.66 149.66 464.41 148.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 465.68 145.92 458.31 145.02 463.51 150.31 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 528.5 155.6 0 79 17 -drop_low_coverage ",
		label=drop_low_coverage,
		lp="528.5,157.5",
		pos="e,456.95,144.36 517.6,178.56 506.16,171.47 489.21,161.21 474,153 470.92,151.34 467.66,149.66 464.41,148.03"];
	cns_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 62.5 80.5 62.5 99.5 357.5 99.5 357.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 210 87.5 0 279 57 -Convert default cnvkit .cns output to standard vcf format ",
		height=0.27778,
		label="Convert default cnvkit .cns output to standard vcf format",
		pos="210,90",
		rects="62.5,80.5,357.5,99.5",
		width=4.0972];
	male_reference -> cns_to_vcf	[_draw_="c 7 -#000000 B 4 199.94 178.82 201.74 163.09 205.71 128.4 208.09 107.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 210.5 108.17 208.86 100.94 205.63 107.62 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 238 133.1 0 64 14 -male_reference ",
		label=male_reference,
		lp="238,135",
		pos="e,209.03,99.438 199.94,178.82 201.74,163.09 205.71,128.4 208.09,107.63"];
	male_reference -> cnvkit_main	[_draw_="c 7 -#000000 B 7 207.72 178.62 216.75 170.51 231.66 158.64 247 153 248.7 152.38 335.9 144.82 392.19 140 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 392.32 142.44 399.09 139.4 391.9 137.56 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 279 155.6 0 64 14 -male_reference ",
		label=male_reference,
		lp="279,157.5",
		pos="e,400.59,139.28 207.72,178.62 216.75,170.51 231.66,158.64 247,153 248.7,152.38 335.9,144.82 392.19,140"];
	tumor_bam -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 286.05 178.88 285.72 166.13 283.39 141.18 271 125 263.7 115.47 252.93 108.23 242.46 102.93 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 243.69 100.8 236.31 100.05 241.61 105.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 303 133.1 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="303,135",
		pos="e,234.94,99.409 286.05,178.88 285.72,166.13 283.39,141.18 271,125 263.7,115.47 252.93,108.23 242.46,102.93"];
	tumor_bam -> cnvkit_main	[_draw_="c 7 -#000000 B 7 293.28 178.8 300.86 170.82 313.5 159.05 327 153 347.35 143.88 371.64 139.5 392.39 137.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 392.48 139.91 399.24 136.87 392.06 135.03 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 350 155.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="350,157.5",
		pos="e,400.75,136.74 293.28,178.8 300.86,170.82 313.5,159.05 327,153 347.35,143.88 371.64,139.5 392.39,137.46"];
	cnvkit_vcf_name -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 103.28 178.5 111.57 165.68 128.7 141.15 148 125 158.33 116.36 171.19 108.88 182.51 103.15 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 183.48 105.41 188.7 100.14 181.33 101 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 175.5 133.1 0 55 11 -output_name ",
		label=output_name,
		lp="175.5,135",
		pos="e,190.06,99.478 103.28,178.5 111.57,165.68 128.7,141.15 148,125 158.33,116.36 171.19,108.88 182.51,103.15"];
	scatter_plot -> cnvkit_main	[_draw_="c 7 -#000000 B 7 616.46 178.5 605.02 170.54 586.69 158.99 569 153 542.27 143.95 510.94 139.68 485.73 137.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 486.1 135.25 478.94 137.19 485.75 140.14 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 613.5 155.6 0 49 12 -scatter_plot ",
		label=scatter_plot,
		lp="613.5,157.5",
		pos="e,477.43,137.09 616.46,178.5 605.02,170.54 586.69,158.99 569,153 542.27,143.95 510.94,139.68 485.73,137.68"];
	diagram -> cnvkit_main	[_draw_="c 7 -#000000 B 7 686.95 178.63 675.58 170.53 657.05 158.66 639 153 611.42 144.35 535.59 139.77 485.63 137.62 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 485.84 135.18 478.75 137.34 485.64 140.07 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 676 155.6 0 34 7 -diagram ",
		label=diagram,
		lp="676,157.5",
		pos="e,477.24,137.27 686.95,178.63 675.58,170.53 657.05,158.66 639,153 611.42,144.35 535.59,139.77 485.63,137.62"];
	reference_cnn -> cnvkit_main	[_draw_="c 7 -#000000 B 7 370.27 178.59 370.97 170.91 373.19 159.77 380 153 383.72 149.3 388.19 146.39 392.99 144.11 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 393.73 146.46 399.32 141.58 391.91 141.91 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 409.5 155.6 0 59 13 -reference_cnn ",
		label=reference_cnn,
		lp="409.5,157.5",
		pos="e,400.73,141.02 370.27,178.59 370.97,170.91 373.19,159.77 380,153 383.72,149.3 388.19,146.39 392.99,144.11"];
	method -> cnvkit_main	[_draw_="c 7 -#000000 B 4 443.17 178.58 442.48 171.52 441.47 161.24 440.62 152.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 443.08 152.5 439.96 145.77 438.2 152.98 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 457 155.6 0 32 6 -method ",
		label=method,
		lp="457,157.5",
		pos="e,439.81,144.26 443.17,178.58 442.48,171.52 441.47,161.24 440.62,152.55"];
	cns_to_vcf -> cnvkit_vcf	[_draw_="c 7 -#000000 B 7 157.25 80.52 135.24 76.3 109.59 70.47 87 63 82.64 61.56 78.11 59.75 73.77 57.86 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 75.02 55.74 67.64 55.05 72.98 60.19 ",
		pos="e,66.26,54.42 157.25,80.518 135.24,76.295 109.59,70.472 87,63 82.638,61.557 78.105,59.75 73.77,57.858"];
	cnvkit_main -> tumor_target_coverage	[_draw_="c 7 -#000000 B 4 439 125.56 439 111.14 439 81.48 439 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 441.45 62.8 439 55.8 436.55 62.8 ",
		pos="e,439,54.284 439,125.56 439,111.14 439,81.476 439,62.727"];
	cnvkit_main -> tumor_segmented_ratios	[_draw_="c 7 -#000000 B 4 452.33 125.56 476.78 110.08 528.94 77.06 557.78 58.8 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 559.03 60.91 563.64 55.09 556.41 56.77 ",
		pos="e,564.92,54.284 452.33,125.56 476.78,110.08 528.94,77.061 557.78,58.802"];
	cnvkit_main -> cn_scatter_plot	[_draw_="c 7 -#000000 B 7 464.11 125.53 503.37 112.27 581.67 85.77 648 63 653.44 61.13 659.21 59.14 664.81 57.2 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 665.59 59.52 671.41 54.91 663.99 54.89 ",
		pos="e,672.84,54.418 464.11,125.53 503.37,112.27 581.67,85.772 648,63 653.44,61.134 659.21,59.141 664.81,57.202"];
	cnvkit_main -> cn_diagram	[_draw_="c 7 -#000000 B 7 477.46 127.11 535.69 116.22 649.36 93.13 743 63 747.79 61.46 752.81 59.6 757.63 57.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 758.53 59.95 764.06 55.02 756.66 55.43 ",
		pos="e,765.46,54.441 477.46,127.11 535.69,116.22 649.36,93.125 743,63 747.79,61.458 752.81,59.596 757.63,57.677"];
	cnvkit_main -> tumor_bin_level_ratios	[_draw_="c 7 -#000000 B 10 430.17 125.56 416.44 113.02 388.57 89.91 360 80 300.78 59.46 281.63 74.4 220 63 210.37 61.22 200.08 58.88 190.5 \
56.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 191.14 54.14 183.76 54.8 189.94 58.89 ",
		pos="e,182.29,54.428 430.17,125.56 416.44,113.02 388.57,89.907 360,80 300.78,59.463 281.63,74.401 220,63 210.37,61.22 200.08,58.88 190.5,\
56.508"];
	cnvkit_main -> tumor_antitarget_coverage	[_draw_="c 7 -#000000 B 10 438.63 125.59 437.56 111.93 433.35 85.04 417 71 402.25 58.34 393.06 66.82 374 63 363.37 60.87 351.95 58.47 341.2 \
56.17 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 341.97 53.83 334.61 54.75 340.93 58.62 ",
		pos="e,333.13,54.43 438.63,125.59 437.56,111.93 433.35,85.036 417,71 402.25,58.338 393.06,66.823 374,63 363.37,60.867 351.95,58.473 341.2,\
56.169"];
	cnvkit_main -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 400.53 128.21 380.63 125.1 355.97 121.08 334 117 319.48 114.3 286.09 107.29 257.61 101.22 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 258.18 98.84 250.83 99.77 257.16 103.63 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 349 110.6 0 30 8 -cnr_file ",
		label=cnr_file,
		lp="349,112.5",
		pos="e,249.35,99.456 400.53,128.21 380.63,125.1 355.97,121.08 334,117 319.48,114.3 286.09,107.29 257.61,101.22"];
	cnvkit_main -> cns_to_vcf	[_draw_="c 7 -#000000 B 10 403.73 125.56 395.19 123.14 386.17 120.26 378 117 370.06 113.83 369.17 110.52 361 108 352.23 105.29 343.05 103 \
333.74 101.08 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 334.35 98.7 327.01 99.76 333.41 103.51 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 393.5 110.6 0 31 8 -cns_file ",
		label=cns_file,
		lp="393.5,112.5",
		pos="e,325.53,99.47 403.73,125.56 395.19,123.14 386.17,120.26 378,117 370.06,113.83 369.17,110.52 361,108 352.23,105.29 343.05,103 333.74,\
101.08"];
}