digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 323 1881 323 1881 0 ",
		bb="0,0,1881,323",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 260 8 315 1873 315 1873 260 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 303 0 84 15 -Workflow Inputs ",
			bb="8,260,1873,315",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,305.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		trimming_min_readlength	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1228.5 268.5 1228.5 287.5 1371.5 287.5 1371.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1300 275.5 0 127 23 -trimming_min_readlength ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_min_readlength,
			pos="1300,278",
			rects="1228.5,268.5,1371.5,287.5",
			width=1.9861];
		reference_annotation	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 106.5 268.5 106.5 287.5 227.5 287.5 227.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 167 275.5 0 105 20 -reference_annotation ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_annotation,
			pos="167,278",
			rects="106.5,268.5,227.5,287.5",
			width=1.6806];
		read_group_fields	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1375.5 268.5 1375.5 287.5 1478.5 287.5 1478.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1427 275.5 0 87 17 -read_group_fields ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=read_group_fields,
			pos="1427,278",
			rects="1375.5,268.5,1478.5,287.5",
			width=1.4306];
		ribosomal_intervals	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1751.5 268.5 1751.5 287.5 1864.5 287.5 1864.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1808 275.5 0 97 19 -ribosomal_intervals ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=ribosomal_intervals,
			pos="1808,278",
			rects="1751.5,268.5,1864.5,287.5",
			width=1.5694];
		instrument_data_bams	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 320.5 268.5 320.5 287.5 449.5 287.5 449.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 385 275.5 0 113 20 -instrument_data_bams ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=instrument_data_bams,
			pos="385,278",
			rects="320.5,268.5,449.5,287.5",
			width=1.7917];
		reference_index	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 453.5 268.5 453.5 287.5 548.5 287.5 548.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 501 275.5 0 79 15 -reference_index ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_index,
			pos="501,278",
			rects="453.5,268.5,548.5,287.5",
			width=1.3194];
		strand	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1482.5 268.5 1482.5 287.5 1529.5 287.5 1529.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1506 275.5 0 31 6 -strand ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=strand,
			pos="1506,278",
			rects="1482.5,268.5,1529.5,287.5",
			width=0.65278];
		read_group_id	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 553 268.5 553 287.5 639 287.5 639 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 596 275.5 0 70 13 -read_group_id ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=read_group_id,
			pos="596,278",
			rects="553,268.5,639,287.5",
			width=1.1944];
		kallisto_index	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 232 268.5 232 287.5 316 287.5 316 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 274 275.5 0 68 14 -kallisto_index ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=kallisto_index,
			pos="274,278",
			rects="232,268.5,316,287.5",
			width=1.1667];
		trimming_adapters	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 643 268.5 643 287.5 753 287.5 753 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 698 275.5 0 94 17 -trimming_adapters ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_adapters,
			pos="698,278",
			rects="643,268.5,753,287.5",
			width=1.5278];
		trimming_max_uncalled	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 757.5 268.5 757.5 287.5 892.5 287.5 892.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 825 275.5 0 119 21 -trimming_max_uncalled ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_max_uncalled,
			pos="825,278",
			rects="757.5,268.5,892.5,287.5",
			width=1.875];
		refFlat	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1698.5 268.5 1698.5 287.5 1747.5 287.5 1747.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1723 275.5 0 33 7 -refFlat ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=refFlat,
			pos="1723,278",
			rects="1698.5,268.5,1747.5,287.5",
			width=0.68056];
		trimming_adapter_min_overlap	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 897 268.5 897 287.5 1067 287.5 1067 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 982 275.5 0 154 28 -trimming_adapter_min_overlap ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_adapter_min_overlap,
			pos="982,278",
			rects="897,268.5,1067,287.5",
			width=2.3611];
		trimming_adapter_trim_end	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1071.5 268.5 1071.5 287.5 1224.5 287.5 1224.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1148 275.5 0 137 25 -trimming_adapter_trim_end ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_adapter_trim_end,
			pos="1148,278",
			rects="1071.5,268.5,1224.5,287.5",
			width=2.125];
		gene_transcript_lookup_table	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1534 268.5 1534 287.5 1694 287.5 1694 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1614 275.5 0 144 28 -gene_transcript_lookup_table ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=gene_transcript_lookup_table,
			pos="1614,278",
			rects="1534,268.5,1694,287.5",
			width=2.2222];
		sample_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 268.5 16 287.5 102 287.5 102 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 59 275.5 0 70 11 -sample_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=sample_name,
			pos="59,278",
			rects="16,268.5,102,287.5",
			width=1.1944];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 584 8 584 63 1562 63 1562 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 638 15 0 92 16 -Workflow Outputs ",
			bb="584,8,1562,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="638,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		stringtie_gene_expression_tsv	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 724.5 35.5 724.5 54.5 889.5 54.5 889.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 807 42.5 0 149 29 -stringtie_gene_expression_tsv ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=stringtie_gene_expression_tsv,
			pos="807,45",
			rects="724.5,35.5,889.5,54.5",
			width=2.2917];
		transcript_abundance_tsv	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1106 35.5 1106 54.5 1248 54.5 1248 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1177 42.5 0 126 24 -transcript_abundance_tsv ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=transcript_abundance_tsv,
			pos="1177,45",
			rects="1106,35.5,1248,54.5",
			width=1.9722];
		final_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 893.5 35.5 893.5 54.5 958.5 54.5 958.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 926 42.5 0 49 9 -final_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=final_bam,
			pos="926,45",
			rects="893.5,35.5,958.5,54.5",
			width=0.90278];
		stringtie_transcript_gtf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 592 35.5 592 54.5 720 54.5 720 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 656 42.5 0 112 24 -stringtie_transcript_gtf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=stringtie_transcript_gtf,
			pos="656,45",
			rects="592,35.5,720,54.5",
			width=1.7778];
		fusion_evidence	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1252 35.5 1252 54.5 1348 54.5 1348 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1300 42.5 0 80 15 -fusion_evidence ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=fusion_evidence,
			pos="1300,45",
			rects="1252,35.5,1348,54.5",
			width=1.3333];
		transcript_abundance_h5	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 962.5 35.5 962.5 54.5 1101.5 54.5 1101.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1032 42.5 0 123 23 -transcript_abundance_h5 ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=transcript_abundance_h5,
			pos="1032,45",
			rects="962.5,35.5,1101.5,54.5",
			width=1.9306];
		gene_abundance	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1352.5 35.5 1352.5 54.5 1451.5 54.5 1451.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1402 42.5 0 83 14 -gene_abundance ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=gene_abundance,
			pos="1402,45",
			rects="1352.5,35.5,1451.5,54.5",
			width=1.375];
		metrics	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1500.5 35.5 1500.5 54.5 1553.5 54.5 1553.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1527 42.5 0 37 7 -metrics ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=metrics,
			pos="1527,45",
			rects="1500.5,35.5,1553.5,54.5",
			width=0.73611];
		chart	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1455.5 35.5 1455.5 54.5 1496.5 54.5 1496.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1476 42.5 0 25 5 -chart ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=chart,
			pos="1476,45",
			rects="1455.5,35.5,1496.5,54.5",
			width=0.56944];
	}
	bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 862 215.5 862 234.5 1102 234.5 1102 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 982 222.5 0 224 42 -bam to trimmed fastqs and HISAT alignments ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="bam to trimmed fastqs and HISAT alignments",
		pos="982,225",
		rects="862,215.5,1102,234.5",
		width=3.3333];
	trimming_min_readlength -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 1265.79 268.51 1253.04 265.55 1238.41 262.37 1225 260 1197.2 255.1 1188.16 262.6 1162 252 1155.82 249.5 1156.21 \
245.42 1150 243 1141.49 239.68 1127.18 236.97 1110.38 234.77 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1110.7 232.34 1103.45 233.91 1110.1 237.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1194 245.6 0 64 14 -min_readlength ",
		label=min_readlength,
		lp="1194,247.5",
		pos="e,1102,233.73 1265.8,268.51 1253,265.55 1238.4,262.37 1225,260 1197.2,255.1 1188.2,262.6 1162,252 1155.8,249.5 1156.2,245.42 1150,\
243 1141.5,239.68 1127.2,236.97 1110.4,234.77"];
	stringtie	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 694 80.5 694 99.5 754 99.5 754 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 724 87.5 0 44 9 -StringTie ",
		height=0.27778,
		label=StringTie,
		pos="724,90",
		rects="694,80.5,754,99.5",
		width=0.83333];
	reference_annotation -> stringtie	[_draw_="c 7 -#000000 B 13 194.92 268.51 206.31 265.36 219.69 262.05 232 260 278.84 252.19 658 273.48 658 226 658 226 658 226 658 134 658 \
118.16 671.51 107.85 686.3 101.31 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 687.08 103.64 692.68 98.78 685.27 99.09 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 702.5 178.1 0 89 20 -reference_annotation ",
		label=reference_annotation,
		lp="702.5,180",
		pos="e,694.09,98.227 194.92,268.51 206.31,265.36 219.69,262.05 232,260 278.84,252.19 658,273.48 658,226 658,226 658,226 658,134 658,118.16 \
671.51,107.85 686.3,101.31"];
	read_group_fields -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 1404.03 268.54 1394.28 265.31 1382.72 261.94 1372 260 1341.99 254.57 1263.64 262.48 1235 252 1228.74 249.71 1229.25 \
245.33 1223 243 1201.91 235.14 1156.16 230.88 1110.13 228.58 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1110.45 226.15 1103.35 228.26 1110.22 231.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1271.5 245.6 0 73 17 -read_group_fields ",
		label=read_group_fields,
		lp="1271.5,247.5",
		pos="e,1101.8,228.19 1404,268.54 1394.3,265.31 1382.7,261.94 1372,260 1342,254.57 1263.6,262.48 1235,252 1228.7,249.71 1229.2,245.33 \
1223,243 1201.9,235.14 1156.2,230.88 1110.1,228.58"];
	generate_qc_metrics	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1460 80.5 1460 99.5 1594 99.5 1594 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1527 87.5 0 118 23 -Picard: RNA Seq Metrics ",
		height=0.27778,
		label="Picard: RNA Seq Metrics",
		pos="1527,90",
		rects="1460,80.5,1594,99.5",
		width=1.8611];
	ribosomal_intervals -> generate_qc_metrics	[_draw_="c 7 -#000000 B 10 1798.57 268.62 1789.13 259.25 1776 243.14 1776 226 1776 226 1776 226 1776 134 1776 116.15 1675.39 103.62 1602.07 \
96.86 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1602.43 94.43 1595.23 96.24 1601.99 99.31 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1816 178.1 0 80 19 -ribosomal_intervals ",
		label=ribosomal_intervals,
		lp="1816,180",
		pos="e,1593.7,96.101 1798.6,268.62 1789.1,259.25 1776,243.14 1776,226 1776,226 1776,226 1776,134 1776,116.15 1675.4,103.62 1602.1,96.858"];
	instrument_data_bams -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 413.61 268.54 425.93 265.26 440.56 261.86 454 260 480.21 256.37 668.05 263.24 692 252 696.84 249.73 695.19 245.34 \
700 243 714.28 236.06 786.26 231.79 853.92 229.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 853.73 231.73 860.63 229.02 853.55 226.83 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 709.5 245.6 0 19 3 -bam ",
		label=bam,
		lp="709.5,247.5",
		pos="e,862.14,228.97 413.61,268.54 425.93,265.26 440.56,261.86 454,260 480.21,256.37 668.05,263.24 692,252 696.84,249.73 695.19,245.34 \
700,243 714.28,236.06 786.26,231.79 853.92,229.27"];
	reference_index -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 522.42 268.56 531.68 265.29 542.72 261.89 553 260 589.54 253.28 686.48 268.03 720 252 724.83 249.69 723.19 245.35 \
728 243 739.94 237.15 796.78 233.04 853.66 230.34 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 853.66 232.79 860.54 230.02 853.43 227.89 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 761 245.6 0 66 15 -reference_index ",
		label=reference_index,
		lp="761,247.5",
		pos="e,862.05,229.95 522.42,268.56 531.68,265.29 542.72,261.89 553,260 589.54,253.28 686.48,268.03 720,252 724.83,249.69 723.19,245.35 \
728,243 739.94,237.15 796.78,233.04 853.66,230.34"];
	strand -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 1495.34 268.51 1490.61 265.23 1484.81 261.83 1479 260 1444.63 249.15 1350.9 264.24 1317 252 1310.73 249.74 1311.27 \
245.27 1305 243 1295.57 239.58 1196.04 234.68 1109.92 231.02 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1110.24 228.58 1103.15 230.73 1110.04 233.48 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1330.5 245.6 0 27 6 -strand ",
		label=strand,
		lp="1330.5,247.5",
		pos="e,1101.6,230.67 1495.3,268.51 1490.6,265.23 1484.8,261.83 1479,260 1444.6,249.15 1350.9,264.24 1317,252 1310.7,249.74 1311.3,245.27 \
1305,243 1295.6,239.58 1196,234.68 1109.9,231.02"];
	strand -> stringtie	[_draw_="c 7 -#000000 B 19 1495.01 268.54 1490.32 265.35 1484.64 262.01 1479 260 1449.89 249.63 1371.68 246.7 1341 243 1235.7 230.29 1209.5 \
225.97 1104 215 1064.5 210.89 1054.53 210.85 1015 207 996.99 205.25 869.81 196.71 853 190 804.55 170.67 758.84 127.68 737.15 105.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 739.09 103.73 732.5 100.34 735.54 107.1 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 866.5 178.1 0 27 6 -strand ",
		label=strand,
		lp="866.5,180",
		pos="e,731.45,99.243 1495,268.54 1490.3,265.35 1484.6,262.01 1479,260 1449.9,249.63 1371.7,246.7 1341,243 1235.7,230.29 1209.5,225.97 \
1104,215 1064.5,210.89 1054.5,210.85 1015,207 996.99,205.25 869.81,196.71 853,190 804.55,170.67 758.84,127.68 737.15,105.24"];
	kallisto	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1132.5 125.5 1132.5 144.5 1221.5 144.5 1221.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1177 132.5 0 73 15 -Kallisto: Quant ",
		height=0.27778,
		label="Kallisto: Quant",
		pos="1177,135",
		rects="1132.5,125.5,1221.5,144.5",
		width=1.2361];
	strand -> kallisto	[_draw_="c 7 -#000000 B 7 1493.63 268.58 1489.12 265.69 1483.92 262.54 1479 260 1384.16 211.13 1265.5 167.09 1209.34 147.19 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1210.36 144.95 1202.94 144.94 1208.73 149.58 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1376.5 200.6 0 27 6 -strand ",
		label=strand,
		lp="1376.5,202.5",
		pos="e,1201.5,144.43 1493.6,268.58 1489.1,265.69 1483.9,262.54 1479,260 1384.2,211.13 1265.5,167.09 1209.3,147.19"];
	strand -> generate_qc_metrics	[_draw_="c 7 -#000000 B 7 1506.65 268.66 1508.08 250.64 1511.73 206.69 1516 170 1518.51 148.38 1522.09 123.54 1524.47 107.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1526.87 108.07 1525.49 100.78 1522.03 107.34 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1529.5 178.1 0 27 6 -strand ",
		label=strand,
		lp="1529.5,180",
		pos="e,1525.7,99.287 1506.7,268.66 1508.1,250.64 1511.7,206.69 1516,170 1518.5,148.38 1522.1,123.54 1524.5,107.57"];
	read_group_id -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 615.3 268.57 623.65 265.3 633.65 261.89 643 260 676.15 253.29 764.52 266.66 795 252 799.82 249.68 798.23 245.42 \
803 243 813.17 237.84 832.1 234.25 853.97 231.74 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 853.95 234.2 860.65 231.02 853.42 229.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 832 245.6 0 58 13 -read_group_id ",
		label=read_group_id,
		lp="832,247.5",
		pos="e,862.15,230.86 615.3,268.57 623.65,265.3 633.65,261.89 643,260 676.15,253.29 764.52,266.66 795,252 799.82,249.68 798.23,245.42 \
803,243 813.17,237.84 832.1,234.25 853.97,231.74"];
	kallisto_index -> kallisto	[_draw_="c 7 -#000000 B 22 292.4 268.61 300.66 265.27 310.63 261.79 320 260 394.67 245.74 586.78 262.97 662 252 677.04 249.81 680.2 246.49 \
695 243 794.25 219.57 819.95 217.77 920 198 938.21 194.4 946.16 201.16 961 190 975.78 178.89 964.65 163.3 980 153 991.73 145.12 \
1069.9 140.34 1124.17 137.94 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1124.26 140.39 1131.15 137.64 1124.05 135.49 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 947.5 200.6 0 55 14 -kallisto_index ",
		label=kallisto_index,
		lp="947.5,202.5",
		pos="e,1132.7,137.57 292.4,268.61 300.66,265.27 310.63,261.79 320,260 394.67,245.74 586.78,262.97 662,252 677.04,249.81 680.2,246.49 \
695,243 794.25,219.57 819.95,217.77 920,198 938.21,194.4 946.16,201.16 961,190 975.78,178.89 964.65,163.3 980,153 991.73,145.12 \
1069.9,140.34 1124.2,137.94"];
	trimming_adapters -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 723 268.57 733.4 265.39 745.67 262.04 757 260 780.03 255.85 841.03 262.39 862 252 866.8 249.62 865.3 245.55 870 \
243 874 240.83 878.19 238.91 882.5 237.22 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 883.18 239.58 888.96 234.92 881.54 234.96 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 888.5 245.6 0 37 8 -adapters ",
		label=adapters,
		lp="888.5,247.5",
		pos="e,890.38,234.41 723,268.57 733.4,265.39 745.67,262.04 757,260 780.03,255.85 841.03,262.39 862,252 866.8,249.62 865.3,245.55 870,\
243 874,240.83 878.19,238.91 882.5,237.22"];
	trimming_max_uncalled -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 10 859.11 268.55 874.35 264.31 892.35 258.66 908 252 915.51 248.8 916.48 246.17 924 243 929.2 240.81 934.77 238.79 \
940.33 236.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 941.03 239.31 946.98 234.89 939.56 234.64 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 952.5 245.6 0 57 12 -max_uncalled ",
		label=max_uncalled,
		lp="952.5,247.5",
		pos="e,948.42,234.44 859.11,268.55 874.35,264.31 892.35,258.66 908,252 915.51,248.8 916.48,246.17 924,243 929.2,240.81 934.77,238.79 \
940.33,236.97"];
	refFlat -> generate_qc_metrics	[_draw_="c 7 -#000000 B 10 1717.53 268.73 1711.61 258.95 1703 241.98 1703 226 1703 226 1703 226 1703 134 1703 111.89 1649.9 101.09 1602.03 \
95.85 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1602.51 93.44 1595.29 95.16 1602 98.31 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1716.5 178.1 0 27 7 -refFlat ",
		label=refFlat,
		lp="1716.5,180",
		pos="e,1593.8,95 1717.5,268.73 1711.6,258.95 1703,241.98 1703,226 1703,226 1703,226 1703,134 1703,111.89 1649.9,101.09 1602,95.854"];
	trimming_adapter_min_overlap -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 4 982 268.58 982 261.52 982 251.24 982 242.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 984.45 242.78 982 235.78 979.55 242.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1025 245.6 0 86 19 -adapter_min_overlap ",
		label=adapter_min_overlap,
		lp="1025,247.5",
		pos="e,982,234.26 982,268.58 982,261.52 982,251.24 982,242.55"];
	trimming_adapter_trim_end -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 10 1119.83 268.5 1107.55 264.29 1093.2 258.67 1081 252 1075.15 248.8 1075.09 245.71 1069 243 1063.49 240.55 1057.63 \
238.45 1051.65 236.66 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1052.31 234.3 1044.91 234.79 1051 239.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1117 245.6 0 72 16 -adapter_trim_end ",
		label=adapter_trim_end,
		lp="1117,247.5",
		pos="e,1043.4,234.39 1119.8,268.5 1107.6,264.29 1093.2,258.67 1081,252 1075.2,248.8 1075.1,245.71 1069,243 1063.5,240.55 1057.6,238.45 \
1051.6,236.66"];
	transcript_to_gene	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1312.5 80.5 1312.5 99.5 1455.5 99.5 1455.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1384 87.5 0 127 26 -Kallisto: TranscriptToGene ",
		height=0.27778,
		label="Kallisto: TranscriptToGene",
		pos="1384,90",
		rects="1312.5,80.5,1455.5,99.5",
		width=1.9861];
	gene_transcript_lookup_table -> transcript_to_gene	[_draw_="c 7 -#000000 B 10 1610.81 268.73 1602.53 248.39 1578.24 195.7 1540 170 1497.31 141.31 1470.63 172.24 1427 145 1411.99 135.63 1399.99 \
119.1 1392.52 106.79 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1394.65 105.59 1389.04 100.74 1390.41 108.03 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1622.5 178.1 0 121 28 -gene_transcript_lookup_table ",
		label=gene_transcript_lookup_table,
		lp="1622.5,180",
		pos="e,1388.3,99.432 1610.8,268.73 1602.5,248.39 1578.2,195.7 1540,170 1497.3,141.31 1470.6,172.24 1427,145 1412,135.63 1400,119.1 1392.5,\
106.79"];
	sample_name -> stringtie	[_draw_="c 7 -#000000 B 13 79.31 268.65 87.49 265.55 97.08 262.25 106 260 155.88 247.41 335 277.45 335 226 335 226 335 226 335 134 335 98.96 \
587.56 92.47 685.67 91.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 685.64 93.72 692.61 91.19 685.58 88.82 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 364 178.1 0 58 11 -sample_name ",
		label=sample_name,
		lp="364,180",
		pos="e,694.12,91.176 79.314,268.65 87.491,265.55 97.082,262.25 106,260 155.88,247.41 335,277.45 335,226 335,226 335,226 335,134 335,98.961 \
587.56,92.47 685.67,91.271"];
	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1012 170.5 1012 189.5 1122 189.5 1122 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1067 177.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="1067,180",
		rects="1012,170.5,1122,189.5",
		width=1.5278];
	bam_to_trimmed_fastq_and_hisat_alignments -> merge	[_draw_="c 7 -#000000 B 4 998.79 215.5 1011.37 209.14 1028.75 200.35 1042.82 193.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1043.75 195.51 1048.89 190.16 1041.54 191.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1043.5 200.6 0 23 4 -bams ",
		label=bams,
		lp="1043.5,202.5",
		pos="e,1050.2,189.48 998.79,215.5 1011.4,209.14 1028.7,200.35 1042.8,193.23"];
	bam_to_trimmed_fastq_and_hisat_alignments -> kallisto	[_draw_="c 7 -#000000 B 7 979.65 215.74 975.87 200.48 970.62 168.09 989 153 999.29 144.55 1072.23 139.98 1124.16 137.77 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1124.22 140.22 1131.11 137.48 1124.02 135.32 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 991 178.1 0 26 6 -fastqs ",
		label=fastqs,
		lp="991,180",
		pos="e,1132.6,137.42 979.65,215.74 975.87,200.48 970.62,168.09 989,153 999.29,144.55 1072.2,139.98 1124.2,137.77"];
	stringtie -> stringtie_gene_expression_tsv	[_draw_="c 7 -#000000 B 4 740.4 80.5 752.68 74.14 769.65 65.35 783.39 58.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 784.2 60.57 789.29 55.17 781.95 56.22 ",
		pos="e,790.64,54.478 740.4,80.505 752.68,74.144 769.65,65.351 783.39,58.233"];
	stringtie -> stringtie_transcript_gtf	[_draw_="c 7 -#000000 B 4 710.57 80.5 700.79 74.32 687.37 65.84 676.29 58.83 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 677.91 56.96 670.69 55.29 675.29 61.1 ",
		pos="e,669.41,54.478 710.57,80.505 700.79,74.321 687.37,65.838 676.29,58.83"];
	transcript_to_gene -> gene_abundance	[_draw_="c 7 -#000000 B 4 1387.47 80.71 1389.71 75.36 1392.7 68.22 1395.38 61.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1397.51 63.06 1397.96 55.66 1392.99 61.17 ",
		pos="e,1398.5,54.265 1387.5,80.709 1389.7,75.355 1392.7,68.217 1395.4,61.807"];
	mark_dup	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 857 125.5 857 144.5 995 144.5 995 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 926 132.5 0 122 24 -Mark duplicates and Sort ",
		height=0.27778,
		label="Mark duplicates and Sort",
		pos="926,135",
		rects="857,125.5,995,144.5",
		width=1.9167];
	merge -> mark_dup	[_draw_="c 7 -#000000 B 4 1039.14 170.5 1016.93 163.73 985.68 154.2 961.65 146.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 962.66 144.62 955.25 144.92 961.23 149.3 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1018.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="1018.5,157.5",
		pos="e,953.8,144.48 1039.1,170.5 1016.9,163.73 985.68,154.2 961.65,146.87"];
	index_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1427 125.5 1427 144.5 1519 144.5 1519 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1473 132.5 0 76 14 -samtools index ",
		height=0.27778,
		label="samtools index",
		pos="1473,135",
		rects="1427,125.5,1519,144.5",
		width=1.2778];
	merge -> index_bam	[_draw_="c 7 -#000000 B 4 1121.75 173.2 1199.65 164.95 1341.58 149.92 1419.04 141.72 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1419.04 144.18 1425.74 141.01 1418.52 139.31 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1315.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="1315.5,157.5",
		pos="e,1427.2,140.85 1121.8,173.2 1199.7,164.95 1341.6,149.92 1419,141.72"];
	mark_dup -> final_bam	[_draw_="c 7 -#000000 B 4 926 125.56 926 111.14 926 81.48 926 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 928.45 62.8 926 55.8 923.55 62.8 ",
		pos="e,926,54.284 926,125.56 926,111.14 926,81.476 926,62.727"];
	mark_dup -> stringtie	[_draw_="c 7 -#000000 B 7 906.18 125.53 891.92 119.76 872.08 112.39 854 108 823.46 100.58 788.05 96.22 761.91 93.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 762.46 91.37 755.27 93.18 762.03 96.25 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 891.5 110.6 0 19 3 -bam ",
		label=bam,
		lp="891.5,112.5",
		pos="e,753.76,93.049 906.18,125.53 891.92,119.76 872.08,112.39 854,108 823.46,100.58 788.05,96.221 761.91,93.777"];
	index_bam -> generate_qc_metrics	[_draw_="c 7 -#000000 B 7 1482.26 125.56 1488.09 120.35 1495.84 113.62 1503 108 1504.62 106.73 1506.32 105.44 1508.04 104.17 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1509.15 106.39 1513.39 100.31 1506.28 102.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1512.5 110.6 0 19 3 -bam ",
		label=bam,
		lp="1512.5,112.5",
		pos="e,1514.6,99.422 1482.3,125.56 1488.1,120.35 1495.8,113.62 1503,108 1504.6,106.73 1506.3,105.44 1508,104.17"];
	kallisto -> transcript_abundance_tsv	[_draw_="c 7 -#000000 B 4 1177 125.56 1177 111.14 1177 81.48 1177 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1179.45 62.8 1177 55.8 1174.55 62.8 ",
		pos="e,1177,54.284 1177,125.56 1177,111.14 1177,81.476 1177,62.727"];
	kallisto -> fusion_evidence	[_draw_="c 7 -#000000 B 4 1188.79 125.56 1210.34 110.15 1256.19 77.34 1281.78 59.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1282.92 61.23 1287.19 55.16 1280.07 57.24 ",
		pos="e,1288.4,54.284 1188.8,125.56 1210.3,110.15 1256.2,77.342 1281.8,59.036"];
	kallisto -> transcript_abundance_h5	[_draw_="c 7 -#000000 B 4 1163.1 125.56 1137.48 110.02 1082.72 76.78 1052.71 58.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1054.2 56.61 1046.94 55.07 1051.66 60.8 ",
		pos="e,1045.6,54.284 1163.1,125.56 1137.5,110.02 1082.7,76.78 1052.7,58.57"];
	kallisto -> transcript_to_gene	[_draw_="c 7 -#000000 B 4 1217.9 125.5 1251.49 118.53 1299.19 108.62 1334.86 101.21 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1335.35 103.61 1341.71 99.79 1334.35 98.81 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1338.5 110.6 0 79 19 -transcript_table_h5 ",
		label=transcript_table_h5,
		lp="1338.5,112.5",
		pos="e,1343.2,99.478 1217.9,125.5 1251.5,118.53 1299.2,108.62 1334.9,101.21"];
	generate_qc_metrics -> metrics	[_draw_="c 7 -#000000 B 4 1527 80.71 1527 75.59 1527 68.85 1527 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1529.45 62.78 1527 55.78 1524.55 62.78 ",
		pos="e,1527,54.265 1527,80.709 1527,75.593 1527,68.848 1527,62.666"];
	generate_qc_metrics -> chart	[_draw_="c 7 -#000000 B 4 1517.17 80.71 1510.11 74.76 1500.44 66.61 1492.25 59.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1493.89 57.88 1486.96 55.24 1490.73 61.63 ",
		pos="e,1485.8,54.265 1517.2,80.709 1510.1,74.76 1500.4,66.609 1492.2,59.701"];
	default1	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 881.5 170.5 881.5 189.5 958.5 189.5 958.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 920 177.5 0 61 12 -\"coordinate\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"coordinate\"",
		pos="920,180",
		rects="881.5,170.5,958.5,189.5",
		width=1.0694];
	default1 -> mark_dup	[_draw_="c 7 -#000000 B 7 907.12 170.58 901.38 165.71 896.59 159.31 900 153 900.52 152.04 901.12 151.12 901.78 150.25 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 903.42 152.08 906.78 145.48 900.03 148.54 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 933.5 155.6 0 67 16 -input_sort_order ",
		label=input_sort_order,
		lp="933.5,157.5",
		pos="e,907.88,144.43 907.12,170.58 901.38,165.71 896.59,159.31 900,153 900.52,152.04 901.12,151.12 901.78,150.25"];
}