digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 233 837 233 837 0 ",
		bb="0,0,837,233",
		bgcolor="#eeeeee",
		clusterrank=local,
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		dpi=96,
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		labeljust=left,
		nodesep=0.05,
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	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
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	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 17 170 17 225 712 225 712 170 ",
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			bb="17,170,712,225",
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			lheight=0.15,
			lp="67,215.5",
			lwidth=1.17,
			rank=same,
			style=dashed
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		cnvkit_vcf_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 103 178.5 103 197.5 203 197.5 203 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 153 185.5 0 84 15 -cnvkit_vcf_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cnvkit_vcf_name,
			pos="153,188",
			rects="103,178.5,203,197.5",
			width=1.3889];
		scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 572 178.5 572 197.5 646 197.5 646 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 609 185.5 0 58 12 -scatter_plot ",
			fillcolor="#94DDF4",
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			label=scatter_plot,
			pos="609,188",
			rects="572,178.5,646,197.5",
			width=1.0278];
		male_reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 207.5 178.5 207.5 197.5 300.5 197.5 300.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 254 185.5 0 77 14 -male_reference ",
			fillcolor="#94DDF4",
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			label=male_reference,
			pos="254,188",
			rects="207.5,178.5,300.5,197.5",
			width=1.2917];
		method	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 650 178.5 650 197.5 704 197.5 704 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 677 185.5 0 38 6 -method ",
			fillcolor="#94DDF4",
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			pos="677,188",
			rects="650,178.5,704,197.5",
			width=0.75];
		reference_cnn	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 305 178.5 305 197.5 391 197.5 391 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 348 185.5 0 70 13 -reference_cnn ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_cnn,
			pos="348,188",
			rects="305,178.5,391,197.5",
			width=1.1944];
		drop_low_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 395.5 178.5 395.5 197.5 506.5 197.5 506.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 451 185.5 0 95 17 -drop_low_coverage ",
			fillcolor="#94DDF4",
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			label=drop_low_coverage,
			pos="451,188",
			rects="395.5,178.5,506.5,197.5",
			width=1.5417];
		diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 510.5 178.5 510.5 197.5 567.5 197.5 567.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 539 185.5 0 41 7 -diagram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=diagram,
			pos="539,188",
			rects="510.5,178.5,567.5,197.5",
			width=0.79167];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 25.5 178.5 25.5 197.5 98.5 197.5 98.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 62 185.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="62,188",
			rects="25.5,178.5,98.5,197.5",
			width=1.0139];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 8 8 63 829 63 829 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 62 15 0 92 16 -Workflow Outputs ",
			bb="8,8,829,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="62,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		tumor_target_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 689.5 35.5 689.5 54.5 820.5 54.5 820.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 755 42.5 0 115 21 -tumor_target_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_target_coverage,
			pos="755,45",
			rects="689.5,35.5,820.5,54.5",
			width=1.8194];
		cn_scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 87.5 35.5 87.5 54.5 178.5 54.5 178.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 133 42.5 0 75 15 -cn_scatter_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_scatter_plot,
			pos="133,45",
			rects="87.5,35.5,178.5,54.5",
			width=1.2639];
		tumor_antitarget_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 182.5 35.5 182.5 54.5 331.5 54.5 331.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 257 42.5 0 133 25 -tumor_antitarget_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_antitarget_coverage,
			pos="257,45",
			rects="182.5,35.5,331.5,54.5",
			width=2.0694];
		cn_diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 336 35.5 336 54.5 410 54.5 410 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 373 42.5 0 58 10 -cn_diagram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_diagram,
			pos="373,45",
			rects="336,35.5,410,54.5",
			width=1.0278];
		tumor_bin_level_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 414 35.5 414 54.5 542 54.5 542 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 478 42.5 0 112 22 -tumor_bin_level_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bin_level_ratios,
			pos="478,45",
			rects="414,35.5,542,54.5",
			width=1.7778];
		tumor_segmented_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 546.5 35.5 546.5 54.5 685.5 54.5 685.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 616 42.5 0 123 22 -tumor_segmented_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_segmented_ratios,
			pos="616,45",
			rects="546.5,35.5,685.5,54.5",
			width=1.9306];
		cnvkit_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 35.5 16.5 54.5 83.5 54.5 83.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 50 42.5 0 51 10 -cnvkit_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cnvkit_vcf,
			pos="50,45",
			rects="16.5,35.5,83.5,54.5",
			width=0.93056];
	}
	cns_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 29.5 80.5 29.5 99.5 324.5 99.5 324.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 177 87.5 0 279 57 -Convert default cnvkit .cns output to standard vcf format ",
		height=0.27778,
		label="Convert default cnvkit .cns output to standard vcf format",
		pos="177,90",
		rects="29.5,80.5,324.5,99.5",
		width=4.0972];
	cnvkit_vcf_name -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 156.29 178.76 158.14 173.93 160.39 167.68 162 162 167.25 143.53 171.56 121.9 174.2 107.41 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 176.54 108.21 175.35 100.89 171.72 107.35 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 197.5 133.1 0 55 11 -output_name ",
		label=output_name,
		lp="197.5,135",
		pos="e,175.61,99.398 156.29,178.76 158.14,173.93 160.39,167.68 162,162 167.25,143.53 171.56,121.9 174.2,107.41"];
	cnvkit_main	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 334.5 125.5 334.5 144.5 411.5 144.5 411.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 373 132.5 0 61 11 -cnvkit_main ",
		height=0.27778,
		label=cnvkit_main,
		pos="373,135",
		rects="334.5,125.5,411.5,144.5",
		width=1.0694];
	scatter_plot -> cnvkit_main	[_draw_="c 7 -#000000 B 7 599.64 178.64 589.96 170.54 574.05 158.68 558 153 533.38 144.3 465.89 139.8 419.62 137.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 419.85 135.23 412.75 137.37 419.63 140.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 600.5 155.6 0 49 12 -scatter_plot ",
		label=scatter_plot,
		lp="600.5,157.5",
		pos="e,411.24,137.3 599.64,178.64 589.96,170.54 574.05,158.68 558,153 533.38,144.3 465.89,139.8 419.62,137.67"];
	male_reference -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 251.78 178.59 248.1 165.89 239.75 141.52 226 125 218.96 116.54 209.33 109.25 200.46 103.61 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 201.82 101.57 194.56 100.06 199.29 105.77 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 270 133.1 0 64 14 -male_reference ",
		label=male_reference,
		lp="270,135",
		pos="e,193.27,99.274 251.78,178.59 248.1,165.89 239.75,141.52 226,125 218.96,116.54 209.33,109.25 200.46,103.61"];
	male_reference -> cnvkit_main	[_draw_="c 7 -#000000 B 7 261.65 178.68 269.33 170.85 281.87 159.4 295 153 304.83 148.21 316.01 144.76 326.77 142.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 327.07 144.72 333.41 140.87 326.05 139.92 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 327 155.6 0 64 14 -male_reference ",
		label=male_reference,
		lp="327,157.5",
		pos="e,334.89,140.56 261.65,178.68 269.33,170.85 281.87,159.4 295,153 304.83,148.21 316.01,144.76 326.77,142.27"];
	method -> cnvkit_main	[_draw_="c 7 -#000000 B 7 667.66 178.55 658.01 170.39 642.12 158.48 626 153 589.08 140.45 482.09 137.13 419.69 136.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 419.74 133.82 412.71 136.19 419.68 138.72 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 660 155.6 0 32 6 -method ",
		label=method,
		lp="660,157.5",
		pos="e,411.2,136.17 667.66,178.55 658.01,170.39 642.12,158.48 626,153 589.08,140.45 482.09,137.13 419.69,136.27"];
	reference_cnn -> cnvkit_main	[_draw_="c 7 -#000000 B 4 352.13 178.58 355.7 171.3 360.95 160.59 365.29 151.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 367.4 152.99 368.28 145.62 363 150.83 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 393.5 155.6 0 59 13 -reference_cnn ",
		label=reference_cnn,
		lp="393.5,157.5",
		pos="e,368.95,144.26 352.13,178.58 355.7,171.3 360.95,160.59 365.29,151.73"];
	drop_low_coverage -> cnvkit_main	[_draw_="c 7 -#000000 B 7 446.27 178.58 441.55 170.89 433.63 159.74 424 153 421.28 151.1 418.34 149.4 415.28 147.88 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 416.29 145.64 408.89 145.07 414.31 150.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 472.5 155.6 0 79 17 -drop_low_coverage ",
		label=drop_low_coverage,
		lp="472.5,157.5",
		pos="e,407.51,144.46 446.27,178.58 441.55,170.89 433.63,159.74 424,153 421.28,151.1 418.34,149.4 415.28,147.88"];
	diagram -> cnvkit_main	[_draw_="c 7 -#000000 B 7 535.13 178.73 530.9 170.71 523.32 158.9 513 153 497.45 144.11 453.97 139.83 419.54 137.79 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 420.1 135.37 412.97 137.43 419.82 140.26 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 540 155.6 0 34 7 -diagram ",
		label=diagram,
		lp="540,157.5",
		pos="e,411.46,137.35 535.13,178.73 530.9,170.71 523.32,158.9 513,153 497.45,144.11 453.97,139.83 419.54,137.79"];
	tumor_bam -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 68.34 178.64 78.22 166 98.29 141.71 119 125 129.16 116.8 141.52 109.28 152.21 103.4 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 153.29 105.6 158.31 100.14 150.98 101.28 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 142 133.1 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="142,135",
		pos="e,159.64,99.431 68.343,178.64 78.216,166 98.288,141.71 119,125 129.16,116.8 141.52,109.28 152.21,103.4"];
	tumor_bam -> cnvkit_main	[_draw_="c 7 -#000000 B 10 79.61 178.5 86.72 175.39 95.11 172.11 103 170 192.96 145.97 218.6 156.5 311 145 316.03 144.37 321.28 143.68 326.51 \
142.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 326.58 145.42 333.17 142.02 325.9 140.57 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 225 155.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="225,157.5",
		pos="e,334.67,141.81 79.605,178.5 86.723,175.39 95.109,172.11 103,170 192.96,145.97 218.6,156.5 311,145 316.03,144.37 321.28,143.68 326.51,\
142.96"];
	cns_to_vcf -> cnvkit_vcf	[_draw_="c 7 -#000000 B 7 144.1 80.54 127.16 75.9 106.28 69.72 88 63 83.76 61.44 79.33 59.63 75.04 57.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 76.35 55.68 68.96 55.08 74.36 60.16 ",
		pos="e,67.579,54.465 144.1,80.544 127.16,75.9 106.28,69.724 88,63 83.761,61.441 79.326,59.63 75.045,57.782"];
	cnvkit_main -> tumor_target_coverage	[_draw_="c 7 -#000000 B 7 411.12 125.59 470.11 112.53 587.04 86.41 686 63 694.82 60.91 704.27 58.62 713.25 56.42 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 713.66 58.84 719.87 54.79 712.49 54.08 ",
		pos="e,721.34,54.426 411.12,125.59 470.11,112.53 587.04,86.412 686,63 694.82,60.912 704.27,58.622 713.25,56.418"];
	cnvkit_main -> cn_scatter_plot	[_draw_="c 7 -#000000 B 10 368.65 125.72 361.67 113.41 346.76 90.58 327 80 270.18 49.59 245.85 77.23 183 63 176.19 61.46 169 59.33 162.27 \
57.1 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 163.47 54.92 156.05 54.95 161.87 59.55 ",
		pos="e,154.62,54.46 368.65,125.72 361.67,113.41 346.76,90.576 327,80 270.18,49.593 245.85,77.229 183,63 176.19,61.458 169,59.328 162.27,\
57.096"];
	cnvkit_main -> tumor_antitarget_coverage	[_draw_="c 7 -#000000 B 7 371.51 125.58 368.64 110.24 361.91 78.6 354 71 350.16 67.31 327.8 61.43 305.51 56.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 306.18 53.94 298.81 54.78 305.1 58.72 ",
		pos="e,297.34,54.45 371.51,125.58 368.64,110.24 361.91,78.596 354,71 350.16,67.313 327.8,61.432 305.51,56.301"];
	cnvkit_main -> cn_diagram	[_draw_="c 7 -#000000 B 4 373 125.56 373 111.14 373 81.48 373 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 375.45 62.8 373 55.8 370.55 62.8 ",
		pos="e,373,54.284 373,125.56 373,111.14 373,81.476 373,62.727"];
	cnvkit_main -> tumor_bin_level_ratios	[_draw_="c 7 -#000000 B 4 383.07 125.56 401.22 110.35 439.6 78.18 461.6 59.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 463.16 61.63 466.96 55.26 460.02 57.87 ",
		pos="e,468.12,54.284 383.07,125.56 401.22,110.35 439.6,78.18 461.6,59.747"];
	cnvkit_main -> tumor_segmented_ratios	[_draw_="c 7 -#000000 B 4 396.3 125.56 440.3 109.63 535.61 75.11 584.97 57.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 585.6 59.61 591.35 54.93 583.93 55.01 ",
		pos="e,592.77,54.412 396.3,125.56 440.3,109.63 535.61,75.112 584.97,57.237"];
	cnvkit_main -> cns_to_vcf	[_draw_="c 7 -#000000 B 10 334.66 128.18 311.87 124.57 285.28 120.05 274 117 263 114.02 260.9 111.3 250 108 242.15 105.63 233.75 103.39 225.53 \
101.37 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 226.26 99.03 218.88 99.78 225.12 103.79 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 289.5 110.6 0 31 8 -cns_file ",
		label=cns_file,
		lp="289.5,112.5",
		pos="e,217.41,99.424 334.66,128.18 311.87,124.57 285.28,120.05 274,117 263,114.02 260.9,111.3 250,108 242.15,105.63 233.75,103.39 225.53,\
101.37"];
	cnvkit_main -> cns_to_vcf	[_draw_="c 7 -#000000 B 10 338.97 125.56 331.26 123.18 323.23 120.32 316 117 309.28 113.91 308.94 110.56 302 108 294.98 105.41 287.61 103.21 \
280.11 101.34 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 280.78 98.98 273.4 99.79 279.67 103.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 331 110.6 0 30 8 -cnr_file ",
		label=cnr_file,
		lp="331,112.5",
		pos="e,271.93,99.443 338.97,125.56 331.26,123.18 323.23,120.32 316,117 309.28,113.91 308.94,110.56 302,108 294.98,105.41 287.61,103.21 \
280.11,101.34"];
}