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		lp="1048,247.5",
		pos="e,993.69,234.24 1087.6,268.52 1056.4,261.43 1016.8,252.41 1016,252 1014.1,251.06 1007,245.34 999.96,239.5"];
	trimming_max_uncalled -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 1237.46 268.55 1225 265.4 1210.4 262.09 1197 260 1173.22 256.3 1111.53 260.45 1089 252 1082.76 249.66 1083.11 \
245.67 1077 243 1071.29 240.5 1065.23 238.37 1059.04 236.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1060.02 234.28 1052.62 234.81 1058.74 239.01 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1117.5 245.6 0 57 12 -max_uncalled ",
		label=max_uncalled,
		lp="1117.5,247.5",
		pos="e,1051.2,234.42 1237.5,268.55 1225,265.4 1210.4,262.09 1197,260 1173.2,256.3 1111.5,260.45 1089,252 1082.8,249.66 1083.1,245.67 \
1077,243 1071.3,240.5 1065.2,238.37 1059,236.56"];
	reference_annotation -> stringtie	[_draw_="c 7 -#000000 B 10 1705.19 268.54 1698.09 258.87 1688 242.24 1688 226 1688 226 1688 226 1688 134 1688 117.73 1673.83 107.33 1658.52 \
100.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1659.8 98.71 1652.39 98.5 1658.05 103.28 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1732.5 178.1 0 89 20 -reference_annotation ",
		label=reference_annotation,
		lp="1732.5,180",
		pos="e,1651,97.961 1705.2,268.54 1698.1,258.87 1688,242.24 1688,226 1688,226 1688,226 1688,134 1688,117.73 1673.8,107.33 1658.5,100.84"];
	sample_name -> stringtie	[_draw_="c 7 -#000000 B 10 1815.08 268.66 1809.75 258.81 1802 241.77 1802 226 1802 226 1802 226 1802 134 1802 104.87 1712.17 95.45 1659.07 \
92.42 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1659.52 89.99 1652.4 92.06 1659.26 94.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1831 178.1 0 58 11 -sample_name ",
		label=sample_name,
		lp="1831,180",
		pos="e,1650.9,91.982 1815.1,268.66 1809.8,258.81 1802,241.77 1802,226 1802,226 1802,226 1802,134 1802,104.87 1712.2,95.445 1659.1,92.416"];
	read_group_id -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 1363.71 268.53 1355.36 265.25 1345.36 261.86 1336 260 1296.51 252.17 1192.9 265.57 1155 252 1148.72 249.75 1149.2 \
245.44 1143 243 1135.64 240.1 1123.69 237.66 1109.55 235.6 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1110.25 233.22 1102.99 234.7 1109.59 238.08 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1184 245.6 0 58 13 -read_group_id ",
		label=read_group_id,
		lp="1184,247.5",
		pos="e,1101.5,234.5 1363.7,268.53 1355.4,265.25 1345.4,261.86 1336,260 1296.5,252.17 1192.9,265.57 1155,252 1148.7,249.75 1149.2,245.44 \
1143,243 1135.6,240.1 1123.7,237.66 1109.6,235.6"];
	reference_index -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 10 339.62 268.54 348.45 265.58 358.61 262.39 368 260 408.3 249.74 418.66 247.46 460 243 533.72 235.04 725.84 230.33 \
855.8 227.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 855.8 230.4 862.75 227.82 855.71 225.5 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 493 245.6 0 66 15 -reference_index ",
		label=reference_index,
		lp="493,247.5",
		pos="e,864.27,227.8 339.62,268.54 348.45,265.58 358.61,262.39 368,260 408.3,249.74 418.66,247.46 460,243 533.72,235.04 725.84,230.33 \
855.8,227.95"];
	trimming_adapters -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 10 448.92 268.56 459.14 265.49 471.03 262.23 482 260 543.42 247.51 559.54 248.25 622 243 699.42 236.49 786.37 232.31 \
855.65 229.72 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 855.59 232.17 862.5 229.47 855.41 227.27 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 640.5 245.6 0 37 8 -adapters ",
		label=adapters,
		lp="640.5,247.5",
		pos="e,864.01,229.41 448.92,268.56 459.14,265.49 471.03,262.23 482,260 543.42,247.51 559.54,248.25 622,243 699.42,236.49 786.37,232.31 \
855.65,229.72"];
	transcript_to_gene	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 802.5 80.5 802.5 99.5 945.5 99.5 945.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 874 87.5 0 127 26 -Kallisto: TranscriptToGene ",
		height=0.27778,
		label="Kallisto: TranscriptToGene",
		pos="874,90",
		rects="802.5,80.5,945.5,99.5",
		width=1.9861];
	gene_transcript_lookup_table -> transcript_to_gene	[_draw_="c 7 -#000000 B 10 107 268.52 117.58 259.32 132 243.56 132 226 132 226 132 226 132 134 132 101.12 602.46 93.34 794.16 91.53 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 794.03 93.98 801 91.47 793.98 89.08 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 192.5 178.1 0 121 28 -gene_transcript_lookup_table ",
		label=gene_transcript_lookup_table,
		lp="192.5,180",
		pos="e,802.52,91.456 107,268.52 117.58,259.32 132,243.56 132,226 132,226 132,226 132,134 132,101.12 602.46,93.339 794.16,91.533"];
	trimming_adapter_min_overlap -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 7 595.4 268.54 623.47 260.54 667.8 248.92 707 243 755.31 235.71 808.82 231.53 855.82 229.13 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 855.83 231.59 862.7 228.8 855.59 226.69 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 750 245.6 0 86 19 -adapter_min_overlap ",
		label=adapter_min_overlap,
		lp="750,247.5",
		pos="e,864.21,228.72 595.4,268.54 623.47,260.54 667.8,248.92 707,243 755.31,235.71 808.82,231.53 855.82,229.13"];
	trimming_adapter_trim_end -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 7 750.97 268.54 768.64 260.61 796.58 249.08 822 243 834.07 240.11 846.76 237.72 859.51 235.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 859.83 238.16 866.39 234.7 859.11 233.31 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 858 245.6 0 72 16 -adapter_trim_end ",
		label=adapter_trim_end,
		lp="858,247.5",
		pos="e,867.89,234.48 750.97,268.54 768.64,260.61 796.58,249.08 822,243 834.07,240.11 846.76,237.72 859.51,235.73"];
	mark_dup	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1309 125.5 1309 144.5 1447 144.5 1447 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1378 132.5 0 122 24 -mark duplicates and sort ",
		height=0.27778,
		label="mark duplicates and sort",
		pos="1378,135",
		rects="1309,125.5,1447,144.5",
		width=1.9167];
	mark_dup -> final_bam	[_draw_="c 7 -#000000 B 7 1373.01 125.54 1371.58 122.87 1370.1 119.87 1369 117 1361.96 98.72 1356.88 76.73 1353.94 62.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1356.41 61.97 1352.68 55.56 1351.6 62.89 ",
		pos="e,1352.4,54.072 1373,125.54 1371.6,122.87 1370.1,119.87 1369,117 1362,98.721 1356.9,76.735 1353.9,62.12"];
	mark_dup -> stringtie	[_draw_="c 7 -#000000 B 7 1403.5 125.58 1421.82 119.83 1447.2 112.47 1470 108 1490.88 103.9 1545.39 98.22 1582.87 94.58 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1582.82 97.04 1589.55 93.93 1582.35 92.16 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1479.5 110.6 0 19 3 -bam ",
		label=bam,
		lp="1479.5,112.5",
		pos="e,1591.1,93.786 1403.5,125.58 1421.8,119.83 1447.2,112.47 1470,108 1490.9,103.9 1545.4,98.22 1582.9,94.576"];
	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1260 170.5 1260 189.5 1370 189.5 1370 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1315 177.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="1315,180",
		rects="1260,170.5,1370,189.5",
		width=1.5278];
	bam_to_trimmed_fastq_and_hisat_alignments -> merge	[_draw_="c 7 -#000000 B 7 1103.82 224.22 1171.66 222.97 1249.16 218.8 1281 207 1288.21 204.33 1295.15 199.57 1300.86 194.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1302.2 196.93 1305.8 190.44 1298.94 193.26 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1307.5 200.6 0 23 4 -bams ",
		label=bams,
		lp="1307.5,202.5",
		pos="e,1306.9,189.44 1103.8,224.22 1171.7,222.97 1249.2,218.8 1281,207 1288.2,204.33 1295.1,199.57 1300.9,194.84"];
	bam_to_trimmed_fastq_and_hisat_alignments -> kallisto	[_draw_="c 7 -#000000 B 4 984 215.56 984 201.14 984 171.48 984 152.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 986.45 152.8 984 145.8 981.55 152.8 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 997 178.1 0 26 6 -fastqs ",
		label=fastqs,
		lp="997,180",
		pos="e,984,144.28 984,215.56 984,201.14 984,171.48 984,152.73"];
	transcript_to_gene -> gene_abundance	[_draw_="c 7 -#000000 B 4 874 80.71 874 75.59 874 68.85 874 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 876.45 62.78 874 55.78 871.55 62.78 ",
		pos="e,874,54.265 874,80.709 874,75.593 874,68.848 874,62.666"];
	generate_qc_metrics -> chart	[_draw_="c 7 -#000000 B 4 1447.55 80.71 1440.77 74.76 1431.48 66.61 1423.61 59.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1425.43 58.04 1418.56 55.26 1422.2 61.72 ",
		pos="e,1417.4,54.265 1447.6,80.709 1440.8,74.76 1431.5,66.609 1423.6,59.701"];
	generate_qc_metrics -> metrics	[_draw_="c 7 -#000000 B 4 1457.39 80.71 1457.62 75.59 1457.94 68.85 1458.22 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1460.67 62.88 1458.55 55.78 1455.77 62.66 ",
		pos="e,1458.6,54.265 1457.4,80.709 1457.6,75.593 1457.9,68.848 1458.2,62.666"];
	merge -> mark_dup	[_draw_="c 7 -#000000 B 4 1327.45 170.5 1336.33 164.44 1348.46 156.16 1358.61 149.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1359.93 151.3 1364.33 145.33 1357.17 147.25 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1361.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="1361.5,157.5",
		pos="e,1365.6,144.48 1327.4,170.5 1336.3,164.44 1348.5,156.16 1358.6,149.23"];
	index_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1213 125.5 1213 144.5 1305 144.5 1305 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1259 132.5 0 76 14 -samtools index ",
		height=0.27778,
		label="samtools index",
		pos="1259,135",
		rects="1213,125.5,1305,144.5",
		width=1.2778];
	merge -> index_bam	[_draw_="c 7 -#000000 B 4 1303.94 170.5 1296.19 164.56 1285.67 156.48 1276.76 149.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1278.29 147.72 1271.24 145.4 1275.3 151.61 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1301.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="1301.5,157.5",
		pos="e,1270,144.48 1303.9,170.5 1296.2,164.56 1285.7,156.48 1276.8,149.64"];
	index_bam -> generate_qc_metrics	[_draw_="c 7 -#000000 B 4 1298.12 125.5 1330.25 118.53 1375.87 108.62 1409.99 101.21 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1410.16 103.68 1416.48 99.8 1409.12 98.89 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1384.5 110.6 0 19 3 -bam ",
		label=bam,
		lp="1384.5,112.5",
		pos="e,1418,99.478 1298.1,125.5 1330.3,118.53 1375.9,108.62 1410,101.21"];
	stringtie -> stringtie_transcript_gtf	[_draw_="c 7 -#000000 B 4 1607.76 80.5 1598.22 74.38 1585.16 66 1574.3 59.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1575.7 57.01 1568.48 55.3 1573.05 61.14 ",
		pos="e,1567.2,54.478 1607.8,80.505 1598.2,74.38 1585.2,65.999 1574.3,59.031"];
	stringtie -> stringtie_gene_expression_tsv	[_draw_="c 7 -#000000 B 4 1637.6 80.5 1650.02 74.14 1667.2 65.35 1681.1 58.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1681.98 60.54 1687.09 55.17 1679.74 56.18 ",
		pos="e,1688.4,54.478 1637.6,80.505 1650,74.144 1667.2,65.351 1681.1,58.233"];
	kallisto -> transcript_abundance_tsv	[_draw_="c 7 -#000000 B 4 1008.83 125.56 1055.83 109.6 1157.74 74.97 1210.25 57.13 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1210.97 59.47 1216.81 54.9 1209.39 54.83 ",
		pos="e,1218.2,54.412 1008.8,125.56 1055.8,109.6 1157.7,74.97 1210.3,57.126"];
	kallisto -> fusion_evidence	[_draw_="c 7 -#000000 B 4 983.23 125.56 981.92 111.14 979.23 81.48 977.52 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 979.96 62.54 976.89 55.79 975.08 62.98 ",
		pos="e,976.75,54.284 983.23,125.56 981.92,111.14 979.23,81.476 977.52,62.727"];
	kallisto -> transcript_abundance_h5	[_draw_="c 7 -#000000 B 4 994.93 125.56 1014.81 110.21 1057.04 77.62 1080.81 59.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1082.03 61.43 1086.07 55.21 1079.03 57.55 ",
		pos="e,1087.3,54.284 994.93,125.56 1014.8,110.21 1057,77.622 1080.8,59.271"];
	kallisto -> transcript_to_gene	[_draw_="c 7 -#000000 B 7 939.56 132.03 924.25 129.74 907.55 125.32 894 117 889.69 114.35 885.97 110.42 882.94 106.4 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 885.01 105.1 879.1 100.62 880.93 107.81 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 933.5 110.6 0 79 19 -transcript_table_h5 ",
		label=transcript_table_h5,
		lp="933.5,112.5",
		pos="e,878.27,99.357 939.56,132.03 924.25,129.74 907.55,125.32 894,117 889.69,114.35 885.97,110.42 882.94,106.4"];
}