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			rects="417.5,313.5,546.5,332.5",
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			lp="300,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
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		cpgs	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 343.5 35.5 343.5 54.5 382.5 54.5 382.5 35.5 ",
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			width=0.54167];
		cpg_bedgraph	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 254.5 35.5 254.5 54.5 339.5 54.5 339.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 297 42.5 0 69 12 -cpg_bedgraph ",
			fillcolor="#94DDF4",
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			label=cpg_bedgraph,
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			width=1.1806];
		gathered_directory	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 468.5 35.5 468.5 54.5 577.5 54.5 577.5 35.5 ",
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			width=1.5139];
		cram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 386.5 35.5 386.5 54.5 427.5 54.5 427.5 35.5 ",
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			label=cram,
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	}
	pileup	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 484.5 170.5 484.5 189.5 567.5 189.5 567.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 526 177.5 0 67 14 -Biscuit pileup ",
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		label="Biscuit pileup",
		pos="526,180",
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		width=1.1528];
	reference_index -> pileup	[_draw_="c 7 -#000000 B 7 276.86 313.53 343.47 291.72 515.74 235.29 516 235 524.81 224.92 526.97 209.64 527.11 197.91 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 529.56 197.87 526.93 190.94 524.67 198 ",
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		pos="e,526.89,189.43 276.86,313.53 343.47,291.72 515.74,235.29 516,235 524.81,224.92 526.97,209.64 527.11,197.91"];
	vcf2bed	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 56 125.5 56 144.5 438 144.5 438 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 247 132.5 0 366 77 -convert a biscuit pileup vcf to a bed and bedgraph file, via a wrapper script ",
		height=0.27778,
		label="convert a biscuit pileup vcf to a bed and bedgraph file, via a wrapper script",
		pos="247,135",
		rects="56,125.5,438,144.5",
		width=5.3056];
	reference_index -> vcf2bed	[_draw_="c 7 -#000000 B 10 250.74 313.7 250.44 303.6 250 286.05 250 271 250 271 250 271 250 179 250 170.29 249.38 160.6 248.7 152.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 251.15 152.48 248.06 145.74 246.27 152.94 ",
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		label=reference,
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	bisulfite_qc	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 481.5 125.5 481.5 144.5 582.5 144.5 582.5 125.5 ",
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		fillcolor="#F3CEA1",
		height=0.27778,
		label="Bisulfite QC tools",
		pos="532,135",
		rects="481.5,125.5,582.5,144.5",
		width=1.4028];
	reference_index -> bisulfite_qc	[_draw_="c 7 -#000000 B 10 271.15 313.62 312.32 295.74 407.48 250.52 470 190 477.8 182.45 476.35 177.69 484 170 491.88 162.08 501.78 154.72 \
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		label=reference,
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		pos="e,517.57,144.37 271.15,313.62 312.32,295.74 407.48,250.52 470,190 477.8,182.45 476.35,177.69 484,170 491.88,162.08 501.78,154.72 \
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	bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 515.5 260.5 515.5 279.5 758.5 279.5 758.5 260.5 ",
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		fillcolor="#F3CEA1",
		height=0.27778,
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		pos="637,270",
		rects="515.5,260.5,758.5,279.5",
		width=3.375];
	reference_index -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 13 272.42 313.55 281.68 310.28 292.72 306.88 303 305 322.37 301.46 462.23 305.47 480 297 484.83 294.7 483.25 290.47 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 511.9 283.38 518.36 279.74 511.04 278.56 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 521 290.6 0 66 15 -reference_index ",
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		lp="521,292.5",
		pos="e,519.85,279.48 272.42,313.55 281.68,310.28 292.72,306.88 303,305 322.37,301.46 462.23,305.47 480,297 484.83,294.7 483.25,290.47 \
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	bam_to_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 330 170.5 330 189.5 470 189.5 470 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 400 177.5 0 124 22 -BAM to CRAM conversion ",
		height=0.27778,
		label="BAM to CRAM conversion",
		pos="400,180",
		rects="330,170.5,470,189.5",
		width=1.9444];
	reference_index -> bam_to_cram	[_draw_="c 7 -#000000 B 4 259.87 313.6 284.67 290.13 354.88 223.69 385.47 194.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 386.86 196.81 390.26 190.22 383.49 193.25 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 354 245.6 0 40 9 -reference ",
		label=reference,
		lp="354,247.5",
		pos="e,391.36,189.18 259.87,313.6 284.67,290.13 354.88,223.69 385.47,194.75"];
	QCannotation -> bisulfite_qc	[_draw_="c 7 -#000000 B 10 1281.11 313.62 1265.54 305.28 1246 290.86 1246 271 1246 271 1246 271 1246 179 1246 146.28 761.8 138.29 590.88 \
136.49 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 591.03 134.04 584.01 136.42 590.98 138.94 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1274.5 223.1 0 57 12 -QCannotation ",
		label=QCannotation,
		lp="1274.5,225",
		pos="e,582.49,136.4 1281.1,313.62 1265.5,305.28 1246,290.86 1246,271 1246,271 1246,271 1246,179 1246,146.28 761.8,138.29 590.88,136.49"];
	trimming_adapter_min_overlap -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 4 636.17 313.58 636.3 306.52 636.51 296.24 636.68 287.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 639.12 287.82 636.81 280.78 634.22 287.73 ",
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		label=adapter_min_overlap,
		lp="679,292.5",
		pos="e,636.84,279.26 636.17,313.58 636.3,306.52 636.51,296.24 636.68,287.55"];
	read_group_id -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 759.47 313.65 750.95 305.79 737.12 294.32 723 288 717.56 285.56 711.77 283.47 705.86 281.68 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 766 290.6 0 58 13 -read_group_id ",
		label=read_group_id,
		lp="766,292.5",
		pos="e,697.76,279.42 759.47,313.65 750.95,305.79 737.12,294.32 723,288 717.56,285.56 711.77,283.47 705.86,281.68"];
	trimming_adapter_trim_end -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 872.54 313.59 853.43 305.69 823.24 294.19 796 288 783.22 285.1 769.75 282.69 756.27 280.68 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 861 290.6 0 72 16 -adapter_trim_end ",
		label=adapter_trim_end,
		lp="861,292.5",
		pos="e,747.89,279.49 872.54,313.59 853.43,305.69 823.24,294.19 796,288 783.22,285.1 769.75,282.69 756.27,280.68"];
	trimming_max_uncalled -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 1011.18 313.57 982.69 305.61 937.73 294.01 898 288 855.49 281.57 808.72 277.58 766.65 275.09 ",
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		label=max_uncalled,
		lp="973.5,292.5",
		pos="e,758.31,274.61 1011.2,313.57 982.69,305.61 937.73,294.01 898,288 855.49,281.57 808.72,277.58 766.65,275.09"];
	bedgraph_to_bigwig	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 163 80.5 163 99.5 331 99.5 331 80.5 ",
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		height=0.27778,
		label="bedGraph to bigwig conversion",
		pos="247,90",
		rects="163,80.5,331,99.5",
		width=2.3333];
	reference_sizes -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 10 130.94 313.58 100.42 301.59 49 280.05 49 271 49 271 49 271 49 134 49 110.46 103.12 99.78 154.77 94.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 154.76 97.41 161.52 94.36 154.33 92.53 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 81.5 200.6 0 65 15 -reference_sizes ",
		label=reference_sizes,
		lp="81.5,202.5",
		pos="e,163.03,94.223 130.94,313.58 100.42,301.59 49,280.05 49,271 49,271 49,271 49,134 49,110.46 103.12,99.781 154.77,94.949"];
	trimming_min_readlength -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 10 1147.61 313.5 1135.13 310.63 1120.98 307.52 1108 305 1061.59 295.99 1050.02 292.88 1003 288 924.87 279.89 836.96 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 767.01 270.98 759.94 273.21 766.86 275.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1098 290.6 0 64 14 -min_readlength ",
		label=min_readlength,
		lp="1098,292.5",
		pos="e,758.43,273.17 1147.6,313.5 1135.1,310.63 1121,307.52 1108,305 1061.6,295.99 1050,292.88 1003,288 924.87,279.89 836.96,275.65 766.88,\
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	trimming_adapters -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 13 382.69 313.56 393.15 310.33 405.55 306.96 417 305 447.28 299.83 527.35 310.39 555 297 559.82 294.67 558.4 290.73 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 575.38 284.62 581.12 279.92 573.7 280.01 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 581.5 290.6 0 37 8 -adapters ",
		label=adapters,
		lp="581.5,292.5",
		pos="e,582.54,279.4 382.69,313.56 393.15,310.33 405.55,306.96 417,305 447.28,299.83 527.35,310.39 555,297 559.82,294.67 558.4,290.73 \
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	instrument_data_bams -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 10 513.82 313.57 525.47 310.65 538.79 307.48 551 305 573.06 300.53 580.2 305.6 601 297 605.15 295.29 612.96 289.76 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 623.5 290.6 0 19 3 -bam ",
		label=bam,
		lp="623.5,292.5",
		pos="e,626.68,279.28 513.82,313.57 525.47,310.65 538.79,307.48 551,305 573.06,300.53 580.2,305.6 601,297 605.15,295.29 612.96,289.76 \
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	pileup -> vcf	[_draw_="c 7 -#000000 B 10 509.89 170.73 500.06 164.86 488.06 156.06 481 145 465.1 120.09 477.43 107.65 467 80 464.6 73.65 461.17 67.05 457.87 \
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		pos="e,453.58,54.322 509.89,170.73 500.06,164.86 488.06,156.06 481,145 465.1,120.09 477.43,107.65 467,80 464.6,73.65 461.17,67.052 457.87,\
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	pileup -> vcf2bed	[_draw_="c 7 -#000000 B 7 484.73 172.06 480.44 171.35 476.13 170.66 472 170 418.56 161.51 357.89 152.37 313.03 145.71 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 313.62 143.32 306.34 144.72 312.9 148.17 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 422.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="422.5,157.5",
		pos="e,304.84,144.49 484.73,172.06 480.44,171.35 476.13,170.66 472,170 418.56,161.51 357.89,152.37 313.03,145.71"];
	pileup -> bisulfite_qc	[_draw_="c 7 -#000000 B 4 527.16 170.71 527.87 165.59 528.81 158.85 529.67 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 532.1 153.04 530.64 145.76 527.24 152.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 535.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="535.5,157.5",
		pos="e,530.85,144.27 527.16,170.71 527.87,165.59 528.81,158.85 529.67,152.67"];
	vcf2bed -> cpgs	[_draw_="c 7 -#000000 B 7 282.55 125.6 299 120.34 317.96 112.19 332 100 338.35 94.49 348.42 75.75 355.35 61.89 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 357.46 63.15 358.35 55.78 353.06 60.99 ",
		pos="e,359.02,54.426 282.55,125.6 299,120.34 317.96,112.19 332,100 338.35,94.49 348.42,75.753 355.35,61.889"];
	vcf2bed -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 4 247 125.71 247 120.59 247 113.85 247 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 249.45 107.78 247 100.78 244.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 267 110.6 0 40 8 -bedgraph ",
		label=bedgraph,
		lp="267,112.5",
		pos="e,247,99.265 247,125.71 247,120.59 247,113.85 247,107.67"];
	bedgraph_to_bigwig -> cpg_bedgraph	[_draw_="c 7 -#000000 B 4 256.64 80.71 263.56 74.76 273.04 66.61 281.07 59.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 282.53 61.67 286.24 55.25 279.34 57.96 ",
		pos="e,287.39,54.265 256.64,80.709 263.56,74.76 273.04,66.609 281.07,59.701"];
	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 533 215.5 533 234.5 643 234.5 643 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 588 222.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="588,225",
		rects="533,215.5,643,234.5",
		width=1.5278];
	merge -> pileup	[_draw_="c 7 -#000000 B 7 577.72 215.65 569.79 209.26 559.46 201.04 555 198 552.83 196.52 550.53 195.03 548.21 193.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 549.85 191.72 542.59 190.22 547.33 195.92 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 575.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="575.5,202.5",
		pos="e,541.29,189.44 577.72,215.65 569.79,209.26 559.46,201.04 555,198 552.83,196.52 550.53,195.03 548.21,193.59"];
	merge -> bisulfite_qc	[_draw_="c 7 -#000000 B 10 586.93 215.67 586.14 210.51 584.86 203.77 583 198 578.78 184.94 578.17 181.02 570 170 564.47 162.53 557.08 155.47 \
550.29 149.74 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 551.95 147.93 544.97 145.43 548.87 151.74 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 589.5 178.1 0 19 3 -bam ",
		label=bam,
		lp="589.5,180",
		pos="e,543.79,144.48 586.93,215.67 586.14,210.51 584.86,203.77 583,198 578.78,184.94 578.17,181.02 570,170 564.47,162.53 557.08,155.47 \
550.29,149.74"];
	merge -> bam_to_cram	[_draw_="c 7 -#000000 B 4 550.86 215.5 520.47 208.56 477.39 198.7 445.04 191.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 445.91 188.99 438.54 189.82 444.82 193.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 519.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="519.5,202.5",
		pos="e,437.07,189.48 550.86,215.5 520.47,208.56 477.39,198.7 445.04,191.3"];
	index_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 347.5 80.5 347.5 99.5 466.5 99.5 466.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 407 87.5 0 103 19 -samtools index cram ",
		height=0.27778,
		label="samtools index cram",
		pos="407,90",
		rects="347.5,80.5,466.5,99.5",
		width=1.6528];
	index_cram -> cram	[_draw_="c 7 -#000000 B 4 407 80.71 407 75.59 407 68.85 407 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 409.45 62.78 407 55.78 404.55 62.78 ",
		pos="e,407,54.265 407,80.709 407,75.593 407,68.848 407,62.666"];
	bisulfite_qc -> gathered_directory	[_draw_="c 7 -#000000 B 4 531.14 125.56 529.66 111.14 526.63 81.48 524.71 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 527.15 62.5 524 55.79 522.28 63 ",
		pos="e,523.85,54.284 531.14,125.56 529.66,111.14 526.63,81.476 524.71,62.727"];
	bam_to_trimmed_fastq_and_biscuit_alignments -> merge	[_draw_="c 7 -#000000 B 4 627.55 260.71 620.77 254.76 611.48 246.61 603.61 239.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 605.43 238.04 598.56 235.26 602.2 241.72 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 627.5 245.6 0 23 4 -bams ",
		label=bams,
		lp="627.5,247.5",
		pos="e,597.42,234.27 627.55,260.71 620.77,254.76 611.48,246.61 603.61,239.7"];
	bam_to_cram -> index_cram	[_draw_="c 7 -#000000 B 13 419.05 170.55 423.01 168.19 426.91 165.34 430 162 435.68 155.88 436.18 153.15 438 145 439.94 136.33 441.21 133.29 \
438 125 435.08 117.45 429.61 110.55 424.07 104.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 426.05 103.47 419.26 100.49 422.71 107.05 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 449.5 133.1 0 21 4 -cram ",
		label=cram,
		lp="449.5,135",
		pos="e,418.15,99.46 419.05,170.55 423.01,168.19 426.91,165.34 430,162 435.68,155.88 436.18,153.15 438,145 439.94,136.33 441.21,133.29 \
438,125 435.08,117.45 429.61,110.55 424.07,104.97"];
}