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	prediction_algorithms -> pvacseq	[_draw_="c 7 -#000000 B 10 2480 403.7 2480 393.6 2480 376.05 2480 361 2480 361 2480 361 2480 179 2480 170.31 2480 160.63 2480 152.65 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2524.5 268.1 0 89 21 -prediction_algorithms ",
		label=prediction_algorithms,
		lp="2524.5,270",
		pos="e,2480,144.24 2480,403.7 2480,393.6 2480,376.05 2480,361 2480,361 2480,361 2480,179 2480,170.31 2480,160.63 2480,152.65"];
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		fillcolor="#F3CEA1",
		height=0.27778,
		label="bam_readcount workflow",
		pos="1022,360",
		rects="952,350.5,1092,369.5",
		width=1.9444];
	rnaseq_bam -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 13 1312.83 403.58 1305.38 400.32 1296.44 396.91 1288 395 1231.11 382.11 1212.95 403.49 1157 387 1149.17 384.69 1148.73 \
380.62 1141 378 1128.03 373.6 1113.89 370.34 1100.04 367.92 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1166.5 380.6 0 19 3 -bam ",
		label=bam,
		lp="1166.5,382.5",
		pos="e,1091.9,366.59 1312.8,403.58 1305.4,400.32 1296.4,396.91 1288,395 1231.1,382.11 1212.9,403.49 1157,387 1149.2,384.69 1148.7,380.62 \
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	variants_to_table	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 413.5 125.5 413.5 144.5 572.5 144.5 572.5 125.5 ",
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		height=0.27778,
		label="SelectVariants (GATK 4.1.8.1)",
		pos="493,135",
		rects="413.5,125.5,572.5,144.5",
		width=2.2083];
	variants_to_table_fields -> variants_to_table	[_draw_="c 7 -#000000 B 10 109.21 403.55 137.33 393.67 178 376.68 178 361 178 361 178 361 178 179 178 155.96 311.99 144.68 405.19 139.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 405.14 142.08 412 139.26 404.88 137.19 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 189.5 268.1 0 23 6 -fields ",
		label=fields,
		lp="189.5,270",
		pos="e,413.51,139.18 109.21,403.55 137.33,393.67 178,376.68 178,361 178,361 178,361 178,179 178,155.96 311.99,144.68 405.19,139.63"];
	add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 1152 305.5 1152 324.5 1396 324.5 1396 305.5 ",
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		fillcolor="#F3CEA1",
		height=0.27778,
		label="Add snv and indel bam-readcount files to a vcf",
		pos="1274,315",
		rects="1152,305.5,1396,324.5",
		width=3.3889];
	sample_name -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 10 1393.48 403.62 1377.4 396.69 1356.18 385.45 1342 370 1329.76 356.67 1338.47 345.08 1325 333 1323.02 331.22 1320.85 \
329.63 1318.55 328.21 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1320.03 326.22 1312.7 325.12 1317.74 330.55 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1371 358.1 0 58 11 -sample_name ",
		label=sample_name,
		lp="1371,360",
		pos="e,1311.4,324.41 1393.5,403.62 1377.4,396.69 1356.2,385.45 1342,370 1329.8,356.67 1338.5,345.08 1325,333 1323,331.22 1320.8,329.63 \
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	add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1097.5 215.5 1097.5 234.5 1240.5 234.5 1240.5 215.5 ",
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		height=0.27778,
		label="add expression info to vcf",
		pos="1169,225",
		rects="1097.5,215.5,1240.5,234.5",
		width=1.9861];
	sample_name -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 10 1412.85 403.84 1409.29 393.88 1404 376.46 1404 361 1404 361 1404 361 1404 269 1404 236.67 1316.83 227.77 1248.68 \
225.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1249.04 223.31 1241.98 225.58 1248.91 228.21 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1433 313.1 0 58 11 -sample_name ",
		label=sample_name,
		lp="1433,315",
		pos="e,1240.5,225.54 1412.8,403.84 1409.3,393.88 1404,376.46 1404,361 1404,361 1404,361 1404,269 1404,236.67 1316.8,227.77 1248.7,225.75"];
	add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1019.5 260.5 1019.5 279.5 1162.5 279.5 1162.5 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1091 267.5 0 127 26 -add expression info to vcf ",
		height=0.27778,
		label="add expression info to vcf",
		pos="1091,270",
		rects="1019.5,260.5,1162.5,279.5",
		width=1.9861];
	sample_name -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 19 1394.17 403.52 1386.3 400.62 1377.31 397.48 1369 395 1323.04 381.26 1307.98 389.16 1264 370 1243.43 361.04 1238.92 \
356.73 1222 342 1217.96 338.49 1218.8 335.36 1214 333 1190.81 321.61 1116.81 342.71 1098 325 1088.13 315.7 1087.12 299.87 1088.14 \
287.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1090.57 288.12 1089.02 280.87 1085.71 287.5 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1251 335.6 0 58 11 -sample_name ",
		label=sample_name,
		lp="1251,337.5",
		pos="e,1089.2,279.37 1394.2,403.52 1386.3,400.62 1377.3,397.48 1369,395 1323,381.26 1308,389.16 1264,370 1243.4,361.04 1238.9,356.73 \
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	sample_name -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 13 1396.71 403.53 1388.36 400.25 1378.36 396.85 1369 395 1329.29 387.14 1225.58 399.26 1187 387 1179.95 384.76 1179.97 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1202.5 380.6 0 31 6 -sample ",
		label=sample,
		lp="1202.5,382.5",
		pos="e,1091.9,362.2 1396.7,403.53 1388.4,400.25 1378.4,396.85 1369,395 1329.3,387.14 1225.6,399.26 1187,387 1180,384.76 1180,380.48 1173,\
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	sample_name -> pvacseq	[_draw_="c 7 -#000000 B 13 1434.54 403.53 1449.82 395.13 1469 380.67 1469 361 1469 361 1469 361 1469 179 1469 95.53 1571.79 159.65 1655 153 \
1807.77 140.79 2281.44 137.12 2432.91 136.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2432.65 138.69 2439.64 136.2 2432.62 133.79 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1498 268.1 0 58 11 -sample_name ",
		label=sample_name,
		lp="1498,270",
		pos="e,2441.2,136.19 1434.5,403.53 1449.8,395.13 1469,380.67 1469,361 1469,361 1469,361 1469,179 1469,95.53 1571.8,159.65 1655,153 1807.8,\
140.79 2281.4,137.12 2432.9,136.24"];
	readcount_minimum_base_quality -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 7 888.83 403.58 911.8 393.84 946.9 379.01 950 378 957.26 375.64 965.04 373.45 972.7 371.49 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 973.25 373.88 979.46 369.82 972.08 369.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 985.5 380.6 0 71 16 -min_base_quality ",
		label=min_base_quality,
		lp="985.5,382.5",
		pos="e,980.93,369.46 888.83,403.58 911.8,393.84 946.9,379.01 950,378 957.26,375.64 965.04,373.45 972.7,371.49"];
	variants_to_table_genotype_fields -> variants_to_table	[_draw_="c 7 -#000000 B 10 282.02 403.57 326.97 392.54 398 373.18 398 361 398 361 398 361 398 179 398 163.74 408.3 153.86 422.12 147.49 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 422.65 149.91 428.23 145.02 420.82 145.37 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 431 268.1 0 66 15 -genotype_fields ",
		label=genotype_fields,
		lp="431,270",
		pos="e,429.63,144.46 282.02,403.57 326.97,392.54 398,373.18 398,361 398,361 398,361 398,179 398,163.74 408.3,153.86 422.12,147.49"];
	phased_proximal_variants_vcf -> pvacseq	[_draw_="c 7 -#000000 B 10 2620.16 403.5 2611.31 394.04 2599 377.85 2599 361 2599 361 2599 361 2599 179 2599 163 2560.48 151.29 2527.27 144.16 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2660 268.1 0 122 28 -phased_proximal_variants_vcf ",
		label=phased_proximal_variants_vcf,
		lp="2660,270",
		pos="e,2519,142.45 2620.2,403.5 2611.3,394.04 2599,377.85 2599,361 2599,361 2599,361 2599,179 2599,163 2560.5,151.29 2527.3,144.16"];
	normal_vaf -> pvacseq	[_draw_="c 7 -#000000 B 10 2748.85 403.84 2745.29 393.88 2740 376.46 2740 361 2740 361 2740 361 2740 179 2740 157.69 2602.28 144.62 2527.3 \
139.09 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2527.59 136.65 2520.43 138.59 2527.24 141.54 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2763 268.1 0 46 10 -normal_vaf ",
		label=normal_vaf,
		lp="2763,270",
		pos="e,2518.9,138.48 2748.8,403.84 2745.3,393.88 2740,376.46 2740,361 2740,361 2740,361 2740,179 2740,157.69 2602.3,144.62 2527.3,139.09"];
	downstream_sequence_length -> pvacseq	[_draw_="c 7 -#000000 B 10 2862.03 403.53 2850.02 394.55 2834 379.18 2834 361 2834 361 2834 361 2834 179 2834 148.46 2623.74 139.45 2527.31 \
136.93 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2527.47 134.48 2520.41 136.76 2527.35 139.38 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2897 268.1 0 126 26 -downstream_sequence_length ",
		label=downstream_sequence_length,
		lp="2897,270",
		pos="e,2518.9,136.72 2862,403.53 2850,394.55 2834,379.18 2834,361 2834,361 2834,361 2834,179 2834,148.46 2623.7,139.45 2527.3,136.93"];
	transcript_expression_file -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 10 1534 403.7 1534 393.6 1534 376.05 1534 361 1534 361 1534 361 1534 269 1534 240.47 1355.87 230.82 1248.49 227.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1248.82 225.15 1241.76 227.39 1248.68 230.05 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1564.5 313.1 0 61 15 -expression_file ",
		label=expression_file,
		lp="1564.5,315",
		pos="e,1240.2,227.35 1534,403.7 1534,393.6 1534,376.05 1534,361 1534,361 1534,361 1534,269 1534,240.47 1355.9,230.82 1248.5,227.59"];
	fasta_size -> pvacseq	[_draw_="c 7 -#000000 B 13 1644.36 403.78 1647.03 393.76 1651 376.28 1651 361 1651 361 1651 361 1651 179 1651 140.34 1695.86 159.28 1734 \
153 1802.53 141.72 2279.72 137.41 2432.83 136.31 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2432.67 138.76 2439.65 136.26 2432.63 133.86 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1672 268.1 0 42 10 -fasta_size ",
		label=fasta_size,
		lp="1672,270",
		pos="e,2441.2,136.25 1644.4,403.78 1647,393.76 1651,376.28 1651,361 1651,361 1651,361 1651,179 1651,140.34 1695.9,159.28 1734,153 1802.5,\
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	expn_val -> pvacseq	[_draw_="c 7 -#000000 B 13 1715.47 403.73 1721.39 393.95 1730 376.98 1730 361 1730 361 1730 361 1730 179 1730 139.07 1776.58 159.35 1816 \
153 1934.92 133.86 2301.95 134.64 2432.94 135.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2432.69 138.02 2439.71 135.62 2432.73 133.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1748 268.1 0 36 8 -expn_val ",
		label=expn_val,
		lp="1748,270",
		pos="e,2441.2,135.63 1715.5,403.73 1721.4,393.95 1730,376.98 1730,361 1730,361 1730,361 1730,179 1730,139.07 1776.6,159.35 1816,153 1934.9,\
133.86 2301.9,134.64 2432.9,135.57"];
	exclude_nas -> pvacseq	[_draw_="c 7 -#000000 B 13 1791.84 403.5 1800.69 394.04 1813 377.85 1813 361 1813 361 1813 361 1813 179 1813 135.23 1864.71 159.47 1908 153 \
2008.65 137.95 2314.54 136.1 2432.71 135.96 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1838.5 268.1 0 51 11 -exclude_nas ",
		label=exclude_nas,
		lp="1838.5,270",
		pos="e,2441.2,135.96 1791.8,403.5 1800.7,394.04 1813,377.85 1813,361 1813,361 1813,361 1813,179 1813,135.23 1864.7,159.47 1908,153 2008.7,\
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	tdna_cov -> pvacseq	[_draw_="c 7 -#000000 B 13 1871.06 403.58 1884.48 394.85 1902 379.84 1902 361 1902 361 1902 361 1902 179 1902 149.12 1934.81 159.38 1964 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1920.5 268.1 0 37 8 -tdna_cov ",
		label=tdna_cov,
		lp="1920.5,270",
		pos="e,2441.3,136.47 1871.1,403.58 1884.5,394.85 1902,379.84 1902,361 1902,361 1902,361 1902,179 1902,149.12 1934.8,159.38 1964,153 2009,\
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	epitope_lengths -> pvacseq	[_draw_="c 7 -#000000 B 13 1944.81 403.54 1951.91 393.87 1962 377.24 1962 361 1962 361 1962 361 1962 179 1962 132.65 2017.14 159.76 2063 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1995.5 268.1 0 67 15 -epitope_lengths ",
		label=epitope_lengths,
		lp="1995.5,270",
		pos="e,2441.2,136.54 1944.8,403.54 1951.9,393.87 1962,377.24 1962,361 1962,361 1962,361 1962,179 1962,132.65 2017.1,159.76 2063,153 2133,\
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	add_vep_fields_to_table	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 571.5 80.5 571.5 99.5 728.5 99.5 728.5 80.5 ",
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		height=0.27778,
		label="add VEP annotation to report",
		pos="650,90",
		rects="571.5,80.5,728.5,99.5",
		width=2.1806];
	vep_to_table_fields -> add_vep_fields_to_table	[_draw_="c 7 -#000000 B 13 418.56 403.57 471.95 381.27 612.9 319.78 643 280 651.65 268.56 650 262.84 650 248.5 650 248.5 650 248.5 650 134 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 652.45 107.76 650 100.76 647.55 107.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 672 245.6 0 42 10 -vep_fields ",
		label=vep_fields,
		lp="672,247.5",
		pos="e,650,99.243 418.56,403.57 471.95,381.27 612.9,319.78 643,280 651.65,268.56 650,262.84 650,248.5 650,248.5 650,248.5 650,134 650,\
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	gene_expression_file -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 10 735.31 403.59 748.11 398.75 764.46 392.56 779 387 841.29 363.19 856.52 356.31 919 333 967.73 314.82 1024.55 294.51 \
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		label=expression_file,
		lp="949.5,337.5",
		pos="e,1067,279.46 735.31,403.59 748.11,398.75 764.46,392.56 779,387 841.29,363.19 856.52,356.31 919,333 967.73,314.82 1024.6,294.51 \
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	n_threads -> pvacseq	[_draw_="c 7 -#000000 B 10 2027.19 403.69 2032.82 393.88 2041 376.87 2041 361 2041 361 2041 361 2041 179 2041 139.96 2319.49 135.83 2432.85 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2061.5 268.1 0 41 9 -n_threads ",
		label=n_threads,
		lp="2061.5,270",
		pos="e,2441,135.77 2027.2,403.69 2032.8,393.88 2041,376.87 2041,361 2041,361 2041,361 2041,179 2041,139.96 2319.5,135.83 2432.8,135.77"];
	detect_variants_vcf -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 4 1022 403.58 1022 396.52 1022 386.24 1022 377.55 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1028.5 380.6 0 13 3 -vcf ",
		label=vcf,
		lp="1028.5,382.5",
		pos="e,1022,369.26 1022,403.58 1022,396.52 1022,386.24 1022,377.55"];
	top_score_metric -> pvacseq	[_draw_="c 7 -#000000 B 10 2112.83 403.53 2116.97 393.57 2123 376.43 2123 361 2123 361 2123 361 2123 179 2123 148.17 2335.56 139.32 2432.65 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2432.66 139.33 2439.6 136.71 2432.55 134.43 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2158 268.1 0 70 16 -top_score_metric ",
		label=top_score_metric,
		lp="2158,270",
		pos="e,2441.1,136.68 2112.8,403.53 2117,393.57 2123,376.43 2123,361 2123,361 2123,361 2123,179 2123,148.17 2335.6,139.32 2432.6,136.88"];
	netmhc_stab -> pvacseq	[_draw_="c 7 -#000000 B 10 2207.15 403.84 2210.71 393.88 2216 376.46 2216 361 2216 361 2216 361 2216 179 2216 157.31 2356.57 144.38 2432.56 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2432.72 141.42 2439.54 138.49 2432.38 136.53 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2242.5 268.1 0 53 11 -netmhc_stab ",
		label=netmhc_stab,
		lp="2242.5,270",
		pos="e,2441,138.38 2207.2,403.84 2210.7,393.88 2216,376.46 2216,361 2216,361 2216,361 2216,179 2216,157.31 2356.6,144.38 2432.6,138.97"];
	trna_vaf -> pvacseq	[_draw_="c 7 -#000000 B 10 2292.06 403.58 2305.48 394.85 2323 379.84 2323 361 2323 361 2323 361 2323 179 2323 155.99 2386.54 144.85 2432.78 \
139.8 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2432.98 142.24 2439.69 139.08 2432.47 137.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2340 268.1 0 34 8 -trna_vaf ",
		label=trna_vaf,
		lp="2340,270",
		pos="e,2441.2,138.92 2292.1,403.58 2305.5,394.85 2323,379.84 2323,361 2323,361 2323,361 2323,179 2323,155.99 2386.5,144.85 2432.8,139.8"];
	additional_report_columns -> pvacseq	[_draw_="c 7 -#000000 B 10 3192.05 403.53 3153.1 392.09 3090 371.87 3090 361 3090 361 3090 361 3090 179 3090 150.8 2669.63 139.79 2526.82 \
136.86 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2527.18 134.42 2520.13 136.72 2527.08 139.32 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3144.5 268.1 0 109 25 -additional_report_columns ",
		label=additional_report_columns,
		lp="3144.5,270",
		pos="e,2518.6,136.69 3192,403.53 3153.1,392.09 3090,371.87 3090,361 3090,361 3090,361 3090,179 3090,150.8 2669.6,139.79 2526.8,136.86"];
	expression_tool -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 13 528.43 403.51 537.03 400.58 546.89 397.42 556 395 587.99 386.51 701 394.1 701 361 701 361 701 361 701 269 701 \
230.46 955.87 225.39 1089.44 225.37 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1089.15 227.82 1096.15 225.38 1089.15 222.92 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 733 313.1 0 64 15 -expression_tool ",
		label=expression_tool,
		lp="733,315",
		pos="e,1097.7,225.38 528.43,403.51 537.03,400.58 546.89,397.42 556,395 587.99,386.51 701,394.1 701,361 701,361 701,361 701,269 701,230.46 \
955.87,225.39 1089.4,225.37"];
	expression_tool -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 16 526 403.59 535.08 400.32 545.91 396.92 556 395 621.15 382.63 640.44 402.16 705 387 763.91 373.16 772.7 352.46 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1044.62 283.72 1050.93 279.81 1043.56 278.93 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 862 335.6 0 64 15 -expression_tool ",
		label=expression_tool,
		lp="862,337.5",
		pos="e,1052.4,279.48 526,403.59 535.08,400.32 545.91,396.92 556,395 621.15,382.63 640.44,402.16 705,387 763.91,373.16 772.7,352.46 830,\
333 878.18,316.64 891.52,316.85 941,305 975.54,296.73 1014.7,287.88 1044.3,281.28"];
	tdna_vaf -> pvacseq	[_draw_="c 7 -#000000 B 10 3314.54 403.54 3296.51 392.48 3268 373.08 3268 361 3268 361 3268 361 3268 179 3268 141.69 2697.43 136.74 2527.31 \
136.09 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2527.33 133.64 2520.32 136.07 2527.31 138.54 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3286 268.1 0 36 8 -tdna_vaf ",
		label=tdna_vaf,
		lp="3286,270",
		pos="e,2518.8,136.06 3314.5,403.54 3296.5,392.48 3268,373.08 3268,361 3268,361 3268,361 3268,179 3268,141.69 2697.4,136.74 2527.3,136.09"];
	readcount_minimum_mapping_quality -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 7 1128.92 403.55 1100.77 398.81 1069.94 392.72 1057 387 1049.93 383.88 1042.94 379.11 1037.08 374.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1038.91 372.84 1031.96 370.26 1035.78 376.61 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1100.5 380.6 0 87 19 -min_mapping_quality ",
		label=min_mapping_quality,
		lp="1100.5,382.5",
		pos="e,1030.8,369.29 1128.9,403.55 1100.8,398.81 1069.9,392.72 1057,387 1049.9,383.88 1042.9,379.11 1037.1,374.51"];
	minimum_fold_change -> pvacseq	[_draw_="c 7 -#000000 B 10 3405.73 403.52 3389.18 395.35 3369 381.25 3369 361 3369 361 3369 361 3369 179 3369 136.46 2710.93 135.29 2527.16 \
135.79 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2527.28 133.34 2520.28 135.81 2527.29 138.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3415 268.1 0 92 19 -minimum_fold_change ",
		label=minimum_fold_change,
		lp="3415,270",
		pos="e,2518.8,135.82 3405.7,403.52 3389.2,395.35 3369,381.25 3369,361 3369,361 3369,361 3369,179 3369,136.46 2710.9,135.29 2527.2,135.79"];
	normal_sample_name -> pvacseq	[_draw_="c 7 -#000000 B 13 3638.16 403.56 3608.88 393.83 3567 377.1 3567 361 3567 361 3567 361 3567 179 3567 118.06 3354.84 156.53 3294 153 \
3002.59 136.1 2651.65 135.4 2526.84 135.77 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2527.1 133.31 2520.11 135.79 2527.12 138.21 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3612 268.1 0 90 18 -normal_sample_name ",
		label=normal_sample_name,
		lp="3612,270",
		pos="e,2518.6,135.79 3638.2,403.56 3608.9,393.83 3567,377.1 3567,361 3567,361 3567,361 3567,179 3567,118.06 3354.8,156.53 3294,153 3002.6,\
136.1 2651.6,135.4 2526.8,135.77"];
	peptide_sequence_length -> pvacseq	[_draw_="c 7 -#000000 B 13 3769 403.59 3748.38 396.22 3726 383.13 3726 361 3726 361 3726 361 3726 179 3726 112.97 3495.94 156.48 3430 153 \
3083.91 134.73 2666.01 135 2527.29 135.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2527.45 133.23 2520.46 135.72 2527.47 138.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3779 268.1 0 106 23 -peptide_sequence_length ",
		label=peptide_sequence_length,
		lp="3779,270",
		pos="e,2518.9,135.72 3769,403.59 3748.4,396.22 3726,383.13 3726,361 3726,361 3726,361 3726,179 3726,112.97 3495.9,156.48 3430,153 3083.9,\
134.73 2666,135 2527.3,135.68"];
	alleles -> pvacseq	[_draw_="c 7 -#000000 B 10 3892.87 403.56 3883.72 394.14 3871 377.99 3871 361 3871 361 3871 361 3871 179 3871 144.6 2769.59 137.37 2526.92 \
136.2 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2527.18 133.75 2520.17 136.17 2527.16 138.65 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3885 268.1 0 28 7 -alleles ",
		label=alleles,
		lp="3885,270",
		pos="e,2518.7,136.16 3892.9,403.56 3883.7,394.14 3871,377.99 3871,361 3871,361 3871,361 3871,179 3871,144.6 2769.6,137.37 2526.9,136.2"];
	normal_cov -> pvacseq	[_draw_="c 7 -#000000 B 13 3958.87 403.56 3949.72 394.14 3937 377.99 3937 361 3937 361 3937 361 3937 179 3937 166.61 3916.12 164.95 3682 \
153 3451.21 141.22 2720.21 137.1 2527.14 136.2 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2527.41 133.75 2520.4 136.17 2527.39 138.65 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3960.5 268.1 0 47 10 -normal_cov ",
		label=normal_cov,
		lp="3960.5,270",
		pos="e,2518.9,136.16 3958.9,403.56 3949.7,394.14 3937,377.99 3937,361 3937,361 3937,361 3937,179 3937,166.61 3916.1,164.95 3682,153 3451.2,\
141.22 2720.2,137.1 2527.1,136.2"];
	net_chop_threshold -> pvacseq	[_draw_="c 7 -#000000 B 13 4053.7 403.59 4042.82 394.44 4028 378.72 4028 361 4028 361 4028 361 4028 179 4028 175.21 3884.18 159.53 3765 153 \
3516.97 139.4 2728.19 136.6 2527.04 136.1 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2527.26 133.65 2520.26 136.08 2527.25 138.55 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4068.5 268.1 0 81 18 -net_chop_threshold ",
		label=net_chop_threshold,
		lp="4068.5,270",
		pos="e,2518.7,136.08 4053.7,403.59 4042.8,394.44 4028,378.72 4028,361 4028,361 4028,361 4028,179 4028,175.21 3884.2,159.53 3765,153 3517,\
139.4 2728.2,136.6 2527,136.1"];
	reference_fasta -> variants_to_table	[_draw_="c 7 -#000000 B 10 603 403.7 603 393.6 603 376.05 603 361 603 361 603 361 603 179 603 163.6 593.54 153.54 580.16 147 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 581.16 144.77 573.75 144.31 579.26 149.28 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 623 268.1 0 40 9 -reference ",
		label=reference,
		lp="623,270",
		pos="e,572.36,143.72 603,403.7 603,393.6 603,376.05 603,361 603,361 603,361 603,179 603,163.6 593.54,153.54 580.16,147"];
	reference_fasta -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 13 623.59 403.63 632.48 400.37 643.11 396.96 653 395 708.04 384.1 723.09 391.8 779 387 815.97 383.82 825.11 381.96 \
862 378 888.69 375.13 917.89 372.03 943.95 369.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 944.09 371.71 950.79 368.53 943.57 366.84 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 894.5 380.6 0 65 15 -reference_fasta ",
		label=reference_fasta,
		lp="894.5,382.5",
		pos="e,952.3,368.37 623.59,403.63 632.48,400.37 643.11,396.96 653,395 708.04,384.1 723.09,391.8 779,387 815.97,383.82 825.11,381.96 862,\
378 888.69,375.13 917.89,372.03 943.95,369.26"];
	maximum_transcript_support_level -> pvacseq	[_draw_="c 7 -#000000 B 10 4196.56 403.6 4179 395.64 4158 381.77 4158 361 4158 361 4158 361 4158 179 4158 137.04 2799.13 135.78 2527.08 135.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2527.11 133.49 2520.12 135.95 2527.12 138.39 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4229 268.1 0 142 32 -maximum_transcript_support_level ",
		label=maximum_transcript_support_level,
		lp="4229,270",
		pos="e,2518.6,135.95 4196.6,403.6 4179,395.64 4158,381.77 4158,361 4158,361 4158,361 4158,179 4158,137.04 2799.1,135.78 2527.1,135.95"];
	trna_cov -> pvacseq	[_draw_="c 7 -#000000 B 10 4343.26 403.77 4337.04 394.02 4328 377.09 4328 361 4328 361 4328 361 4328 179 4328 132.52 2813.99 134.95 2526.74 \
135.83 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2527.1 133.38 2520.11 135.85 2527.12 138.28 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4345.5 268.1 0 35 8 -trna_cov ",
		label=trna_cov,
		lp="4345.5,270",
		pos="e,2518.6,135.86 4343.3,403.77 4337,394.02 4328,377.09 4328,361 4328,361 4328,361 4328,179 4328,132.52 2814,134.95 2526.7,135.83"];
	variants_to_table -> add_vep_fields_to_table	[_draw_="c 7 -#000000 B 4 524.02 125.5 548.96 118.67 584.15 109.03 611 101.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 611.48 104.09 617.59 99.88 610.19 99.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 592.5 110.6 0 13 3 -tsv ",
		label=tsv,
		lp="592.5,112.5",
		pos="e,619.05,99.478 524.02,125.5 548.96,118.67 584.15,109.03 611,101.68"];
	add_tumor_rna_bam_readcount_to_vcf -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 4 1237.85 305.5 1208.39 298.58 1166.69 288.79 1135.25 281.4 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1135.93 279.04 1128.55 279.82 1134.81 283.81 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1204.5 290.6 0 13 3 -vcf ",
		label=vcf,
		lp="1204.5,292.5",
		pos="e,1127.1,279.48 1237.8,305.5 1208.4,298.58 1166.7,288.79 1135.2,281.4"];
	add_transcript_expression_data_to_vcf -> annotated_vcf	[_draw_="c 7 -#000000 B 10 1169 215.76 1169 207.1 1169 193.09 1169 181 1169 181 1169 181 1169 89 1169 80.31 1169 70.63 1169 62.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1171.45 62.76 1169 55.76 1166.55 62.76 ",
		pos="e,1169,54.243 1169,215.76 1169,207.1 1169,193.09 1169,181 1169,181 1169,181 1169,89 1169,80.308 1169,70.627 1169,62.655"];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 979 170.5 979 189.5 1041 189.5 1041 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1010 177.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="1010,180",
		rects="979,170.5,1041,189.5",
		width=0.86111];
	add_transcript_expression_data_to_vcf -> index	[_draw_="c 7 -#000000 B 4 1137.59 215.5 1112.16 208.63 1076.22 198.91 1048.97 191.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1049.66 189.19 1042.27 189.73 1048.39 193.92 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1109.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="1109.5,202.5",
		pos="e,1040.8,189.33 1137.6,215.5 1112.2,208.63 1076.2,198.91 1049,191.54"];
	add_gene_expression_data_to_vcf -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 4 1106.41 260.5 1117.84 254.2 1133.6 245.51 1146.45 238.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1147.35 240.73 1152.3 235.21 1144.98 236.44 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1142.5 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="1142.5,247.5",
		pos="e,1153.6,234.48 1106.4,260.5 1117.8,254.2 1133.6,245.51 1146.4,238.43"];
	add_vep_fields_to_table -> annotated_tsv	[_draw_="c 7 -#000000 B 4 728.19 81.16 815.34 72.43 953.74 58.55 1027.98 51.11 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1028.04 53.57 1034.76 50.43 1027.55 48.69 ",
		pos="e,1036.3,50.283 728.19,81.163 815.34,72.428 953.74,58.555 1028,51.114"];
	tumor_rna_bam_readcount -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 10 1076.55 350.5 1084.93 348.28 1093.34 345.49 1101 342 1107.07 339.23 1106.8 335.44 1113 333 1120.39 330.09 1132.37 \
327.64 1146.55 325.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1146.54 328.06 1153.14 324.69 1145.88 323.21 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1165 335.6 0 104 23 -indel_bam_readcount_tsv ",
		label=indel_bam_readcount_tsv,
		lp="1165,337.5",
		pos="e,1154.6,324.49 1076.5,350.5 1084.9,348.28 1093.3,345.49 1101,342 1107.1,339.23 1106.8,335.44 1113,333 1120.4,330.09 1132.4,327.64 \
1146.6,325.59"];
	tumor_rna_bam_readcount -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 995.36 350.55 985.19 345.99 977.44 339.89 984 333 989.7 327.01 1112.28 325.76 1148.17 324.79 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1147.88 327.25 1154.79 324.55 1147.7 322.35 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 990.5 335.6 0 13 3 -vcf ",
		label=vcf,
		lp="990.5,337.5",
		pos="e,1156.3,324.49 995.36,350.55 985.19,345.99 977.44,339.89 984,333 989.7,327.01 1112.3,325.76 1148.2,324.79"];
	tumor_rna_bam_readcount -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 1009.13 350.69 1002.48 345.41 996.75 338.54 1002 333 1007.02 327.7 1114.32 325.88 1147.72 324.82 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1147.55 327.28 1154.45 324.55 1147.36 322.39 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1051 335.6 0 98 21 -snv_bam_readcount_tsv ",
		label=snv_bam_readcount_tsv,
		lp="1051,337.5",
		pos="e,1156,324.49 1009.1,350.69 1002.5,345.41 996.75,338.54 1002,333 1007,327.7 1114.3,325.88 1147.7,324.82"];
	pvacseq -> pvacseq_predictions	[_draw_="c 7 -#000000 B 4 2441.24 131.17 2267.69 118.51 1560.89 66.93 1340.17 50.83 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1340.57 48.4 1333.41 50.34 1340.21 53.29 ",
		pos="e,1331.9,50.225 2441.2,131.17 2267.7,118.51 1560.9,66.934 1340.2,50.828"];
	index -> variants_to_table	[_draw_="c 7 -#000000 B 4 979.19 176.9 909.34 172.08 733.4 159.56 578.6 145.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 579.01 142.81 571.82 144.6 578.56 147.69 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 772.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="772.5,157.5",
		pos="e,570.31,144.46 979.19,176.9 909.34,172.08 733.4,159.56 578.6,145.23"];
	index -> add_vep_fields_to_table	[_draw_="c 7 -#000000 B 4 979.31 171.5 915.04 155.79 766.22 119.41 692.69 101.44 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 693.39 99.08 686.01 99.8 692.22 103.84 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 871.5 133.1 0 13 3 -vcf ",
		label=vcf,
		lp="871.5,135",
		pos="e,684.54,99.442 979.31,171.5 915.04,155.79 766.22,119.41 692.69,101.44"];
	index -> pvacseq	[_draw_="c 7 -#000000 B 7 1040.91 176.59 1110.17 171.3 1283.06 158.68 1428 153 1815.89 137.81 2284.74 136.12 2432.83 135.99 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2432.78 138.44 2439.78 135.98 2432.78 133.54 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1446.5 155.6 0 37 9 -input_vcf ",
		label=input_vcf,
		lp="1446.5,157.5",
		pos="e,2441.3,135.98 1040.9,176.59 1110.2,171.3 1283.1,158.68 1428,153 1815.9,137.81 2284.7,136.12 2432.8,135.99"];
	default1	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 1265.5 350.5 1265.5 369.5 1312.5 369.5 1312.5 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1289 357.5 0 31 5 -\"RNA\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"RNA\"",
		pos="1289,360",
		rects="1265.5,350.5,1312.5,369.5",
		width=0.65278];
	default1 -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 1286.67 350.74 1285.17 345.6 1283.11 338.87 1281 333 1280.87 332.64 1280.74 332.28 1280.6 331.91 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1282.98 331.26 1278.13 325.65 1278.42 333.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1303.5 335.6 0 41 9 -data_type ",
		label=data_type,
		lp="1303.5,337.5",
		pos="e,1277.6,324.24 1286.7,350.74 1285.2,345.6 1283.1,338.87 1281,333 1280.9,332.64 1280.7,332.28 1280.6,331.91"];
	default2	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 1167 260.5 1167 279.5 1239 279.5 1239 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1203 267.5 0 56 12 -\"transcript\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"transcript\"",
		pos="1203,270",
		rects="1167,260.5,1239,279.5",
		width=1];
	default2 -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 4 1196.44 260.71 1191.93 255 1185.81 247.26 1180.49 240.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1182.74 239.42 1176.47 235.45 1178.89 242.46 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1209.5 245.6 0 41 9 -data_type ",
		label=data_type,
		lp="1209.5,247.5",
		pos="e,1175.5,234.27 1196.4,260.71 1191.9,255 1185.8,247.26 1180.5,240.54"];
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		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1123 312.5 0 34 6 -\"gene\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"gene\"",
		pos="1123,315",
		rects="1098,305.5,1148,324.5",
		width=0.69444];
	default3 -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 4 1116.83 305.71 1112.67 300.12 1107.06 292.58 1102.13 285.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1104.2 284.63 1098.05 280.48 1100.27 287.56 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1129.5 290.6 0 41 9 -data_type ",
		label=data_type,
		lp="1129.5,292.5",
		pos="e,1097.2,279.27 1116.8,305.71 1112.7,300.12 1107.1,292.58 1102.1,285.96"];
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		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 610 132.5 0 50 9 -\"pvacseq\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"pvacseq\"",
		pos="610,135",
		rects="577,125.5,643,144.5",
		width=0.91667];
	default4 -> add_vep_fields_to_table	[_draw_="c 7 -#000000 B 7 612.47 125.54 614.39 120.07 617.5 113.04 622 108 623.2 106.66 624.53 105.38 625.94 104.19 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 627.05 106.41 631.27 100.32 624.17 102.45 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 634 110.6 0 24 6 -prefix ",
		label=prefix,
		lp="634,112.5",
		pos="e,632.5,99.428 612.47,125.54 614.39,120.07 617.5,113.04 622,108 623.2,106.66 624.53,105.38 625.94,104.19"];
}