digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 413 806 413 806 0 ",
		bb="0,0,806,413",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 350 8 405 798 405 798 350 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 393 0 84 15 -Workflow Inputs ",
			bb="8,350,798,405",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,395.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 362.5 358.5 362.5 377.5 435.5 377.5 435.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 399 365.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="399,368",
			rects="362.5,358.5,435.5,377.5",
			width=1.0139];
		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 358.5 16.5 377.5 79.5 377.5 79.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 48 365.5 0 47 9 -reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference,
			pos="48,368",
			rects="16.5,358.5,79.5,377.5",
			width=0.875];
		insert_size	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 439.5 358.5 439.5 377.5 508.5 377.5 508.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 474 365.5 0 53 11 -insert_size ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=insert_size,
			pos="474,368",
			rects="439.5,358.5,508.5,377.5",
			width=0.95833];
		normal_sample_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 512.5 358.5 512.5 377.5 637.5 377.5 637.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 575 365.5 0 109 18 -normal_sample_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_sample_name,
			pos="575,368",
			rects="512.5,358.5,637.5,377.5",
			width=1.7361];
		normal_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 84 358.5 84 377.5 162 377.5 162 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 123 365.5 0 62 10 -normal_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_bam,
			pos="123,368",
			rects="84,358.5,162,377.5",
			width=1.0833];
		ref_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 641.5 358.5 641.5 377.5 704.5 377.5 704.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 673 365.5 0 47 8 -ref_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=ref_name,
			pos="673,368",
			rects="641.5,358.5,704.5,377.5",
			width=0.875];
		tumor_sample_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 166 358.5 166 377.5 286 377.5 286 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 226 365.5 0 104 17 -tumor_sample_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_sample_name,
			pos="226,368",
			rects="166,358.5,286,377.5",
			width=1.6667];
		region_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 290 358.5 290 377.5 358 377.5 358 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 324 365.5 0 52 11 -region_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=region_file,
			pos="324,368",
			rects="290,358.5,358,377.5",
			width=0.94444];
		output_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 708.5 358.5 708.5 377.5 789.5 377.5 789.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 749 365.5 0 65 11 -output_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_name,
			pos="749,368",
			rects="708.5,358.5,789.5,377.5",
			width=1.125];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 580 8 580 63 700 63 700 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 634 15 0 92 16 -Workflow Outputs ",
			bb="580,8,700,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="634,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		pindel_region_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 588.5 35.5 588.5 54.5 691.5 54.5 691.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 640 42.5 0 87 17 -pindel_region_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=pindel_region_vcf,
			pos="640,45",
			rects="588.5,35.5,691.5,54.5",
			width=1.4306];
	}
	pindel_region	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 307 305.5 307 324.5 399 324.5 399 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 353 312.5 0 76 15 -pindel v0.2.5b8 ",
		height=0.27778,
		label="pindel v0.2.5b8",
		pos="353,315",
		rects="307,305.5,399,324.5",
		width=1.2778];
	tumor_bam -> pindel_region	[_draw_="c 7 -#000000 B 7 397.25 358.58 395.33 351.11 391.6 340.28 385 333 383.73 331.6 382.32 330.29 380.81 329.08 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 382.21 327.07 375.04 325.18 379.47 331.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 413 335.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="413,337.5",
		pos="e,373.78,324.33 397.25,358.58 395.33,351.11 391.6,340.28 385,333 383.73,331.6 382.32,330.29 380.81,329.08"];
	pindel2vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 594 215.5 594 234.5 686 234.5 686 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 640 222.5 0 76 15 -pindel v0.2.5b8 ",
		height=0.27778,
		label="pindel v0.2.5b8",
		pos="640,225",
		rects="594,215.5,686,234.5",
		width=1.2778];
	reference -> pindel2vcf	[_draw_="c 7 -#000000 B 13 58.61 358.58 68.41 351.11 83.57 340.29 98 333 151.83 305.82 167.62 303.1 226 288 346.33 256.88 378.88 260.01 502 \
243 529.61 239.19 560.38 235.36 585.85 232.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 586.11 234.73 592.77 231.47 585.53 229.87 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 246 290.6 0 40 9 -reference ",
		label=reference,
		lp="246,292.5",
		pos="e,594.27,231.29 58.615,358.58 68.407,351.11 83.57,340.29 98,333 151.83,305.82 167.62,303.1 226,288 346.33,256.88 378.88,260.01 502,\
243 529.61,239.19 560.38,235.36 585.85,232.3"];
	reference -> pindel_region	[_draw_="c 7 -#000000 B 7 62.48 358.64 77.54 350.42 102.09 338.35 125 333 183.4 319.36 252.29 315.9 298.94 315.35 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 298.89 317.8 305.87 315.29 298.85 312.9 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 145 335.6 0 40 9 -reference ",
		label=reference,
		lp="145,337.5",
		pos="e,307.38,315.28 62.476,358.64 77.541,350.42 102.09,338.35 125,333 183.4,319.36 252.29,315.9 298.94,315.35"];
	insert_size -> pindel_region	[_draw_="c 7 -#000000 B 7 467.28 358.62 460.5 350.74 449.28 339.26 437 333 427.8 328.31 417.4 324.91 407.15 322.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 407.82 320.09 400.45 320.99 406.77 324.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 471 335.6 0 44 11 -insert_size ",
		label=insert_size,
		lp="471,337.5",
		pos="e,398.98,320.67 467.28,358.62 460.5,350.74 449.28,339.26 437,333 427.8,328.31 417.4,324.91 407.15,322.45"];
	normal_sample_name -> pindel_region	[_draw_="c 7 -#000000 B 7 558.72 358.58 542.69 350.67 517.29 339.16 494 333 465.82 325.54 433.61 321.35 407.09 318.99 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 407.38 316.56 400.2 318.42 406.97 321.44 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 564 335.6 0 90 18 -normal_sample_name ",
		label=normal_sample_name,
		lp="564,337.5",
		pos="e,398.69,318.29 558.72,358.58 542.69,350.67 517.29,339.16 494,333 465.82,325.54 433.61,321.35 407.09,318.99"];
	normal_bam -> pindel_region	[_draw_="c 7 -#000000 B 7 136 358.58 149.08 350.56 170.11 338.87 190 333 225.32 322.58 266.6 318.35 298.77 316.72 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 298.77 319.17 305.66 316.41 298.55 314.28 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 215.5 335.6 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="215.5,337.5",
		pos="e,307.17,316.34 136,358.58 149.08,350.56 170.11,338.87 190,333 225.32,322.58 266.6,318.35 298.77,316.72"];
	ref_name -> pindel2vcf	[_draw_="c 7 -#000000 B 4 671.03 358.6 665.7 335.82 650.89 272.55 643.84 242.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 646.24 241.91 642.26 235.65 641.47 243.03 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 675.5 290.6 0 39 8 -ref_name ",
		label=ref_name,
		lp="675.5,292.5",
		pos="e,641.91,234.18 671.03,358.6 665.7,335.82 650.89,272.55 643.84,242.39"];
	tumor_sample_name -> pindel_region	[_draw_="c 7 -#000000 B 7 230.09 358.53 234.4 350.59 241.94 339.06 252 333 266.01 324.56 282.98 319.99 298.99 317.6 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 299.12 320.05 305.75 316.73 298.5 315.19 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 294.5 335.6 0 85 17 -tumor_sample_name ",
		label=tumor_sample_name,
		lp="294.5,337.5",
		pos="e,307.25,316.54 230.09,358.53 234.4,350.59 241.94,339.06 252,333 266.01,324.56 282.98,319.99 298.99,317.6"];
	region_file -> pindel_region	[_draw_="c 7 -#000000 B 4 328.79 358.58 332.97 351.23 339.14 340.37 344.21 331.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 346.22 332.88 347.55 325.58 341.96 330.45 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 363.5 335.6 0 43 11 -region_file ",
		label=region_file,
		lp="363.5,337.5",
		pos="e,348.3,324.26 328.79,358.58 332.97,351.23 339.14,340.37 344.21,331.46"];
	output_name -> pindel2vcf	[_draw_="c 7 -#000000 B 7 744.1 358.89 735.15 344.27 715.31 312.74 696 288 682.62 270.86 665.72 252.54 654 240.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 656.06 238.91 649.44 235.57 652.54 242.31 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 729.5 290.6 0 55 11 -output_name ",
		label=output_name,
		lp="729.5,292.5",
		pos="e,648.39,234.48 744.1,358.89 735.15,344.27 715.31,312.74 696,288 682.62,270.86 665.72,252.54 654,240.3"];
	remove_end_tags	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 575.5 125.5 575.5 144.5 704.5 144.5 704.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 640 132.5 0 113 20 -remove END INFO tags ",
		height=0.27778,
		label="remove END INFO tags",
		pos="640,135",
		rects="575.5,125.5,704.5,144.5",
		width=1.7917];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 609 80.5 609 99.5 671 99.5 671 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 640 87.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="640,90",
		rects="609,80.5,671,99.5",
		width=0.86111];
	remove_end_tags -> index	[_draw_="c 7 -#000000 B 4 640 125.71 640 120.59 640 113.85 640 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 642.45 107.78 640 100.78 637.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 646.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="646.5,112.5",
		pos="e,640,99.265 640,125.71 640,120.59 640,113.85 640,107.67"];
	fix_vcf_header	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 598.5 170.5 598.5 189.5 681.5 189.5 681.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 640 177.5 0 67 14 -fix vcf header ",
		height=0.27778,
		label="fix vcf header",
		pos="640,180",
		rects="598.5,170.5,681.5,189.5",
		width=1.1528];
	pindel2vcf -> fix_vcf_header	[_draw_="c 7 -#000000 B 4 640 215.71 640 210.59 640 203.85 640 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 642.45 197.78 640 190.78 637.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 646.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="646.5,202.5",
		pos="e,640,189.27 640,215.71 640,210.59 640,203.85 640,197.67"];
	cat	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 393 260.5 393 279.5 425 279.5 425 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 409 267.5 0 16 3 -cat ",
		height=0.27778,
		label=cat,
		pos="409,270",
		rects="393,260.5,425,279.5",
		width=0.44444];
	cat -> pindel2vcf	[_draw_="c 7 -#000000 B 4 424.88 266.04 457.68 259.94 534.22 245.69 586.57 235.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 586.83 238.39 593.26 234.7 585.93 233.57 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 566.5 245.6 0 43 10 -pindel_out ",
		label=pindel_out,
		lp="566.5,247.5",
		pos="e,594.75,234.42 424.88,266.04 457.68,259.94 534.22,245.69 586.57,235.95"];
	fix_vcf_header -> remove_end_tags	[_draw_="c 7 -#000000 B 4 640 170.71 640 165.59 640 158.85 640 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 642.45 152.78 640 145.78 637.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 646.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="646.5,157.5",
		pos="e,640,144.27 640,170.71 640,165.59 640,158.85 640,152.67"];
	index -> pindel_region_vcf	[_draw_="c 7 -#000000 B 4 640 80.71 640 75.59 640 68.85 640 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 642.45 62.78 640 55.78 637.55 62.78 ",
		pos="e,640,54.265 640,80.709 640,75.593 640,68.848 640,62.666"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 398.99 314.41 433.11 313.62 475.61 309.93 487 297 503.42 278.37 461.49 273.05 432.94 271.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 433.19 269.12 426.1 271.27 432.99 274.01 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 514 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="514,292.5",
		pos="e,424.58,271.21 398.99,314.41 433.11,313.62 475.61,309.93 487,297 503.42,278.37 461.49,273.05 432.94,271.56"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 307.25 312.28 281.7 309.65 257.5 303.27 271 288 285.59 271.5 349.53 269.89 385.03 270.32 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 384.84 272.77 391.88 270.44 384.93 267.87 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 295 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="295,292.5",
		pos="e,393.4,270.47 307.25,312.28 281.7,309.65 257.5,303.27 271,288 285.59,271.5 349.53,269.89 385.03,270.32"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 336.71 305.67 329.2 300.72 322.95 294.22 328 288 335.08 279.27 363.76 274.86 384.99 272.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 385.01 275.21 391.76 272.14 384.57 270.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 352 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="352,292.5",
		pos="e,393.27,272.01 336.71,305.67 329.2,300.72 322.95,294.22 328,288 335.08,279.27 363.76,274.86 384.99,272.75"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 362.95 305.63 369.2 300.45 377.47 293.71 385 288 386.64 286.76 388.35 285.49 390.08 284.22 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 391.19 286.45 395.45 280.38 388.33 282.46 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 409 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="409,292.5",
		pos="e,396.68,279.49 362.95,305.63 369.2,300.45 377.47,293.71 385,288 386.64,286.76 388.35,285.49 390.08,284.22"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 398.74 308.78 412.77 306.17 425.67 302.39 430 297 433.1 293.14 431.8 288.97 428.69 285.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 430.55 283.5 423.79 280.46 427.18 287.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 455 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="455,292.5",
		pos="e,422.69,279.42 398.74,308.78 412.77,306.17 425.67,302.39 430,297 433.1,293.14 431.8,288.97 428.69,285.12"];
}