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		label="Biscuit pileup",
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	reference_index -> pileup	[_draw_="c 7 -#000000 B 10 289.56 313.88 300.77 298.1 327.57 263.08 358 243 366.68 237.27 372.74 242.46 380 235 389.78 224.96 394.25 209.46 \
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	vcf2bed	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 68 125.5 68 144.5 450 144.5 450 125.5 ",
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		pos="259,135",
		rects="68,125.5,450,144.5",
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	reference_index -> vcf2bed	[_draw_="c 7 -#000000 B 10 281.9 313.76 279.53 303.73 276 286.24 276 271 276 271 276 271 276 179 276 169.47 272.34 159.53 268.42 151.61 ",
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	reference_index -> bam_to_cram	[_draw_="c 7 -#000000 B 10 308.68 313.5 319.82 309.22 332.93 303.55 344 297 404.69 261.09 406.59 232.67 468 198 471.43 196.06 475.13 194.27 \
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		pos="720,270",
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		width=3.375];
	reference_index -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 13 306.5 313.53 315.56 310.42 326.16 307.14 336 305 367.03 298.25 375.66 302.11 407 297 425.84 293.93 430.09 290.6 \
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	bisulfite_qc	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 540.5 125.5 540.5 144.5 641.5 144.5 641.5 125.5 ",
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		label="Bisulfite QC tools",
		pos="591,135",
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	reference_index -> bisulfite_qc	[_draw_="c 7 -#000000 B 10 303.9 313.65 320 305.41 340 291.12 340 271 340 271 340 271 340 179 340 136.92 477.34 149.92 532.33 145.38 ",
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	QCannotation -> bisulfite_qc	[_draw_="c 7 -#000000 B 10 1314.11 313.62 1298.54 305.28 1279 290.86 1279 271 1279 271 1279 271 1279 179 1279 147.57 815.69 138.77 649.47 \
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		label=QCannotation,
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	instrument_data_bams -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 431.46 313.55 443.18 310.58 456.65 307.4 469 305 522.66 294.58 583.39 286.27 631.67 280.47 ",
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	assay_non_cpg_sites -> vcf2bed	[_draw_="c 7 -#000000 B 10 174.05 313.71 175.24 303.63 177 286.1 177 271 177 271 177 271 177 179 177 163.67 188.38 153.79 202.66 147.43 ",
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		label=assay_non_cpg_sites,
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	trimming_adapter_min_overlap -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 570.56 313.64 586.28 306 610.75 294.88 633 288 641.25 285.45 650.05 283.2 658.78 281.25 ",
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		label=adapter_min_overlap,
		lp="676,292.5",
		pos="e,667.1,279.46 570.56,313.64 586.28,306 610.75,294.88 633,288 641.25,285.45 650.05,283.2 658.78,281.25"];
	trimming_adapter_trim_end -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 4 720 313.58 720 306.52 720 296.24 720 287.55 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 756 290.6 0 72 16 -adapter_trim_end ",
		label=adapter_trim_end,
		lp="756,292.5",
		pos="e,720,279.26 720,313.58 720,306.52 720,296.24 720,287.55"];
	trimming_min_readlength -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 854.77 313.53 839 306.03 814.84 295.18 793 288 785.74 285.61 777.96 283.43 770.3 281.47 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 847 290.6 0 64 14 -min_readlength ",
		label=min_readlength,
		lp="847,292.5",
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	read_group_id -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 10 969.14 313.64 961.26 310.75 952.28 307.59 944 305 915.91 296.21 908.94 293.35 880 288 863.95 285.03 846.89 282.54 \
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		label=read_group_id,
		lp="946,292.5",
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	trimming_adapters -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 1069.6 313.57 1046.23 305.54 1009.12 293.84 976 288 935.27 280.82 890.41 276.61 849.77 274.16 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1033.5 290.6 0 37 8 -adapters ",
		label=adapters,
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	reference_sizes -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 10 62.47 313.7 61.88 303.61 61 286.06 61 271 61 271 61 271 61 134 61 110.46 115.12 99.78 166.77 94.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 166.76 97.41 173.52 94.36 166.33 92.53 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 93.5 200.6 0 65 15 -reference_sizes ",
		label=reference_sizes,
		lp="93.5,202.5",
		pos="e,175.03,94.223 62.475,313.7 61.882,303.61 61,286.06 61,271 61,271 61,271 61,134 61,110.46 115.12,99.781 166.77,94.949"];
	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 517 215.5 517 234.5 627 234.5 627 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 572 222.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="572,225",
		rects="517,215.5,627,234.5",
		width=1.5278];
	merge -> pileup	[_draw_="c 7 -#000000 B 4 537.62 215.5 509.74 208.61 470.31 198.87 440.45 191.49 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 441.16 189.14 433.77 189.84 439.98 193.9 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 509.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="509.5,202.5",
		pos="e,432.31,189.48 537.62,215.5 509.74,208.61 470.31,198.87 440.45,191.49"];
	merge -> bam_to_cram	[_draw_="c 7 -#000000 B 4 560.54 215.5 552.44 209.5 541.41 201.32 532.12 194.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 533.73 192.58 526.65 190.38 530.82 196.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 557.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="557.5,202.5",
		pos="e,525.44,189.48 560.54,215.5 552.44,209.5 541.41,201.32 532.12,194.43"];
	merge -> bisulfite_qc	[_draw_="c 7 -#000000 B 7 575.46 215.76 578.18 208.97 581.85 199.01 584 190 586.95 177.62 588.73 163.34 589.76 152.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 592.2 152.84 590.35 145.66 587.31 152.42 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 596.5 178.1 0 19 3 -bam ",
		label=bam,
		lp="596.5,180",
		pos="e,590.48,144.15 575.46,215.76 578.18,208.97 581.85,199.01 584,190 586.95,177.62 588.73,163.34 589.76,152.57"];
	bedgraph_to_bigwig -> cpg_bigwig	[_draw_="c 7 -#000000 B 4 278.56 80.5 293.47 74.03 314.2 65.02 330.74 57.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 331.65 60.12 337.09 55.08 329.7 55.62 ",
		pos="e,338.48,54.478 278.56,80.505 293.47,74.026 314.2,65.024 330.74,57.84"];
	pileup -> vcf	[_draw_="c 7 -#000000 B 7 419.55 170.53 430.61 165 443.17 156.63 450 145 465.05 119.38 463 83.34 460.06 62.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 462.52 62.43 458.99 55.91 457.68 63.21 ",
		pos="e,458.75,54.413 419.55,170.53 430.61,165 443.17,156.63 450,145 465.05,119.38 463,83.342 460.06,62.556"];
	pileup -> vcf2bed	[_draw_="c 7 -#000000 B 4 370.54 170.5 348.74 163.76 318.1 154.28 294.45 146.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 295.26 144.65 287.85 144.93 293.81 149.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 346.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="346.5,157.5",
		pos="e,286.4,144.48 370.54,170.5 348.74,163.76 318.1,154.28 294.45,146.97"];
	pileup -> bisulfite_qc	[_draw_="c 7 -#000000 B 4 436.13 170.5 467.32 163.56 511.55 153.7 544.76 146.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 545.17 148.72 551.47 144.81 544.11 143.94 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 517.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="517.5,157.5",
		pos="e,552.95,144.48 436.13,170.5 467.32,163.56 511.55,153.7 544.76,146.3"];
	vcf2bed -> cpgs	[_draw_="c 7 -#000000 B 7 332.51 125.64 339.66 123.38 346.62 120.55 353 117 377.14 103.56 396.95 77.57 407.85 61.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 409.71 62.68 411.41 55.46 405.58 60.05 ",
		pos="e,412.22,54.187 332.51,125.64 339.66,123.38 346.62,120.55 353,117 377.14,103.56 396.95,77.568 407.85,61.038"];
	vcf2bed -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 4 259 125.71 259 120.59 259 113.85 259 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 261.45 107.78 259 100.78 256.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 305.5 110.6 0 93 20 -methylation_bedgraph ",
		label=methylation_bedgraph,
		lp="305.5,112.5",
		pos="e,259,99.265 259,125.71 259,120.59 259,113.85 259,107.67"];
	index_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 464.5 80.5 464.5 99.5 583.5 99.5 583.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 524 87.5 0 103 19 -samtools index cram ",
		height=0.27778,
		label="samtools index cram",
		pos="524,90",
		rects="464.5,80.5,583.5,99.5",
		width=1.6528];
	bam_to_cram -> index_cram	[_draw_="c 7 -#000000 B 7 514.36 170.56 514.88 159.91 516 141.04 518 125 518.72 119.22 519.76 112.94 520.77 107.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 523.11 108.17 522 100.84 518.29 107.26 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 528.5 133.1 0 21 4 -cram ",
		label=cram,
		lp="528.5,135",
		pos="e,522.28,99.348 514.36,170.56 514.88,159.91 516,141.04 518,125 518.72,119.22 519.76,112.94 520.77,107.36"];
	bam_to_trimmed_fastq_and_biscuit_alignments -> merge	[_draw_="c 7 -#000000 B 4 690.76 260.5 667.35 253.7 634.36 244.12 609.09 236.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 610.04 234.5 602.63 234.9 608.67 239.21 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 670.5 245.6 0 23 4 -bams ",
		label=bams,
		lp="670.5,247.5",
		pos="e,601.18,234.48 690.76,260.5 667.35,253.7 634.36,244.12 609.09,236.78"];
	bisulfite_qc -> gathered_directory	[_draw_="c 7 -#000000 B 7 590.1 125.55 588.92 114.9 586.69 96.04 584 80 583.03 74.23 581.79 67.94 580.62 62.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 583.09 62.16 579.22 55.83 578.3 63.19 ",
		pos="e,578.9,54.351 590.1,125.55 588.92,114.9 586.69,96.036 584,80 583.03,74.227 581.79,67.941 580.62,62.361"];
	index_cram -> cram	[_draw_="c 7 -#000000 B 4 518.99 80.71 515.68 75.24 511.24 67.9 507.3 61.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 509.5 60.28 503.78 55.56 505.31 62.82 ",
		pos="e,503,54.265 518.99,80.709 515.68,75.236 511.24,67.899 507.3,61.381"];
}