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	trimming_adapters -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 970.16 268.53 980.12 265.6 991.51 262.44 1002 260 1021.79 255.4 1029.27 261.92 1047 252 1051.67 249.39 1050.4 \
245.74 1055 243 1058.61 240.85 1062.48 238.98 1066.47 237.34 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1067.13 239.7 1072.85 234.99 1065.44 235.1 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1073.5 245.6 0 37 8 -adapters ",
		label=adapters,
		lp="1073.5,247.5",
		pos="e,1074.3,234.47 970.16,268.53 980.12,265.6 991.51,262.44 1002,260 1021.8,255.4 1029.3,261.92 1047,252 1051.7,249.39 1050.4,245.74 \
1055,243 1058.6,240.85 1062.5,238.98 1066.5,237.34"];
	read_group_id -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 10 1065.12 268.54 1074.11 264.26 1084.55 258.59 1093 252 1097.22 248.71 1096.92 246.46 1101 243 1102.59 241.65 1104.3 \
240.33 1106.05 239.06 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1107.2 241.24 1111.65 235.3 1104.47 237.17 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1130 245.6 0 58 13 -read_group_id ",
		label=read_group_id,
		lp="1130,247.5",
		pos="e,1112.9,234.46 1065.1,268.54 1074.1,264.26 1084.6,258.59 1093,252 1097.2,248.71 1096.9,246.46 1101,243 1102.6,241.65 1104.3,240.33 \
1106,239.06"];
	kallisto_index -> kallisto	[_draw_="c 7 -#000000 B 4 1766.8 268.6 1720.69 244.7 1588.58 176.22 1534.51 148.19 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1535.8 146.1 1528.46 145.05 1533.55 150.45 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1674.5 200.6 0 55 14 -kallisto_index ",
		label=kallisto_index,
		lp="1674.5,202.5",
		pos="e,1527.1,144.35 1766.8,268.6 1720.7,244.7 1588.6,176.22 1534.5,148.19"];
	trimming_adapter_trim_end -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 7 1168.64 268.62 1167.91 261.17 1165.84 250.37 1160 243 1158.97 241.71 1157.82 240.5 1156.58 239.37 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1158.12 237.46 1151.02 235.31 1155.23 241.42 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1200 245.6 0 72 16 -adapter_trim_end ",
		label=adapter_trim_end,
		lp="1200,247.5",
		pos="e,1149.8,234.42 1168.6,268.62 1167.9,261.17 1165.8,250.37 1160,243 1159,241.71 1157.8,240.5 1156.6,239.37"];
	trimming_max_uncalled -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 10 1292.96 268.52 1280.81 264 1265.94 258.13 1253 252 1245.63 248.51 1244.71 245.67 1237 243 1229.4 240.37 1221.36 \
238.14 1213.23 236.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1213.92 233.9 1206.56 234.81 1212.88 238.69 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1281.5 245.6 0 57 12 -max_uncalled ",
		label=max_uncalled,
		lp="1281.5,247.5",
		pos="e,1205.1,234.49 1293,268.52 1280.8,264 1265.9,258.13 1253,252 1245.6,248.51 1244.7,245.67 1237,243 1229.4,240.37 1221.4,238.14 1213.2,\
236.26"];
	ribosomal_intervals -> generate_qc_metrics	[_draw_="c 7 -#000000 B 16 423.92 268.55 434.86 265.24 447.93 261.8 460 260 495.84 254.65 751.36 262.64 786 252 793.07 249.83 793.12 245.72 \
800 243 881.94 210.56 926.55 262.51 995 207 1025.52 182.25 1033.87 133.39 1036.15 107.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1038.58 108.03 1036.63 100.88 1033.69 107.68 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1061 178.1 0 80 19 -ribosomal_intervals ",
		label=ribosomal_intervals,
		lp="1061,180",
		pos="e,1036.7,99.366 423.92,268.55 434.86,265.24 447.93,261.8 460,260 495.84,254.65 751.36,262.64 786,252 793.07,249.83 793.12,245.72 \
800,243 881.94,210.56 926.55,262.51 995,207 1025.5,182.25 1033.9,133.39 1036.1,107.7"];
	transcript_to_gene	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1447.5 80.5 1447.5 99.5 1590.5 99.5 1590.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1519 87.5 0 127 26 -Kallisto: TranscriptToGene ",
		height=0.27778,
		label="Kallisto: TranscriptToGene",
		pos="1519,90",
		rects="1447.5,80.5,1590.5,99.5",
		width=1.9861];
	gene_transcript_lookup_table -> transcript_to_gene	[_draw_="c 7 -#000000 B 10 1862.43 268.56 1840.04 261.53 1818 248.82 1818 226 1818 226 1818 226 1818 134 1818 111.8 1687.25 100.16 1598.67 \
94.82 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1598.88 92.38 1591.75 94.41 1598.59 97.27 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1878.5 178.1 0 121 28 -gene_transcript_lookup_table ",
		label=gene_transcript_lookup_table,
		lp="1878.5,180",
		pos="e,1590.2,94.321 1862.4,268.56 1840,261.53 1818,248.82 1818,226 1818,226 1818,226 1818,134 1818,111.8 1687.2,100.16 1598.7,94.819"];
	reference_index -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 1413.93 268.57 1405.05 265.46 1394.65 262.17 1385 260 1356.17 253.52 1346.42 263.02 1319 252 1312.81 249.51 1313.22 \
245.41 1307 243 1296.48 238.93 1277.63 235.8 1256 233.41 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1256.31 230.98 1249.09 232.69 1255.8 235.85 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1352 245.6 0 66 15 -reference_index ",
		label=reference_index,
		lp="1352,247.5",
		pos="e,1247.6,232.53 1413.9,268.57 1405.1,265.46 1394.7,262.17 1385,260 1356.2,253.52 1346.4,263.02 1319,252 1312.8,249.51 1313.2,245.41 \
1307,243 1296.5,238.93 1277.6,235.8 1256,233.41"];
	instrument_data_bams -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 7 1642.42 268.57 1630.56 265.46 1616.72 262.17 1604 260 1487.15 240.06 1352.22 231.78 1255.93 228.37 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1256.2 225.93 1249.12 228.13 1256.04 230.82 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1548.5 245.6 0 19 3 -bam ",
		label=bam,
		lp="1548.5,247.5",
		pos="e,1247.6,228.08 1642.4,268.57 1630.6,265.46 1616.7,262.17 1604,260 1487.1,240.06 1352.2,231.78 1255.9,228.37"];
	sample_name -> stringtie	[_draw_="c 7 -#000000 B 13 262.3 268.61 270.48 265.51 280.07 262.22 289 260 329.36 249.98 473 267.58 473 226 473 226 473 226 473 134 473 \
110.69 631.38 97.89 705.98 93.15 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 705.88 95.61 712.71 92.74 705.57 90.72 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 502 178.1 0 58 11 -sample_name ",
		label=sample_name,
		lp="502,180",
		pos="e,714.22,92.642 262.3,268.61 270.48,265.51 280.07,262.22 289,260 329.36,249.98 473,267.58 473,226 473,226 473,226 473,134 473,110.69 \
631.38,97.891 705.98,93.153"];
	reference_annotation -> stringtie	[_draw_="c 7 -#000000 B 13 106.96 268.58 117.94 265.65 130.48 262.48 142 260 186.07 250.51 342 271.08 342 226 342 226 342 226 342 134 342 \
97.64 605.37 91.97 705.76 91.13 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 705.62 93.58 712.6 91.08 705.58 88.68 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 386.5 178.1 0 89 20 -reference_annotation ",
		label=reference_annotation,
		lp="386.5,180",
		pos="e,714.11,91.066 106.96,268.58 117.94,265.65 130.48,262.48 142,260 186.07,250.51 342,271.08 342,226 342,226 342,226 342,134 342,97.64 \
605.37,91.969 705.76,91.128"];
	read_group_fields -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 16 534.11 268.51 544.09 265.23 555.97 261.83 567 260 592.22 255.81 773.86 262.88 797 252 801.84 249.72 800.17 245.3 \
805 243 822.87 234.49 963.23 236.06 983 235 988.5 234.71 994.12 234.4 999.79 234.08 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 999.77 236.53 1006.62 233.69 999.5 231.64 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 841.5 245.6 0 73 17 -read_group_fields ",
		label=read_group_fields,
		lp="841.5,247.5",
		pos="e,1008.1,233.6 534.11,268.51 544.09,265.23 555.97,261.83 567,260 592.22,255.81 773.86,262.88 797,252 801.84,249.72 800.17,245.3 \
805,243 822.87,234.49 963.23,236.06 983,235 988.5,234.71 994.12,234.4 999.79,234.08"];
	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 892 170.5 892 189.5 1002 189.5 1002 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 947 177.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="947,180",
		rects="892,170.5,1002,189.5",
		width=1.5278];
	index_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 907 125.5 907 144.5 999 144.5 999 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 953 132.5 0 76 14 -samtools index ",
		height=0.27778,
		label="samtools index",
		pos="953,135",
		rects="907,125.5,999,144.5",
		width=1.2778];
	merge -> index_bam	[_draw_="c 7 -#000000 B 4 948.16 170.71 948.87 165.59 949.81 158.85 950.67 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 953.1 153.04 951.64 145.76 948.24 152.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 959.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="959.5,157.5",
		pos="e,951.85,144.27 948.16,170.71 948.87,165.59 949.81,158.85 950.67,152.67"];
	mark_dup	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 751 125.5 751 144.5 889 144.5 889 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 820 132.5 0 122 24 -Mark duplicates and Sort ",
		height=0.27778,
		label="Mark duplicates and Sort",
		pos="820,135",
		rects="751,125.5,889,144.5",
		width=1.9167];
	merge -> mark_dup	[_draw_="c 7 -#000000 B 7 928.81 170.57 916.59 165.11 900.04 158.09 885 153 878.33 150.74 871.19 148.6 864.17 146.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 864.89 144.31 857.49 144.85 863.61 149.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 916.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="916.5,157.5",
		pos="e,856.03,144.46 928.81,170.57 916.59,165.11 900.04,158.09 885,153 878.33,150.74 871.19,148.6 864.17,146.65"];
	stringtie -> stringtie_transcript_gtf	[_draw_="c 7 -#000000 B 4 744 80.71 744 75.59 744 68.85 744 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 746.45 62.78 744 55.78 741.55 62.78 ",
		pos="e,744,54.265 744,80.709 744,75.593 744,68.848 744,62.666"];
	stringtie -> stringtie_gene_expression_tsv	[_draw_="c 7 -#000000 B 4 773.83 80.5 797.72 73.7 831.38 64.12 857.16 56.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 857.71 59.17 863.77 54.89 856.37 54.45 ",
		pos="e,865.23,54.478 773.83,80.505 797.72,73.702 831.38,64.118 857.16,56.776"];
	bam_to_trimmed_fastq_and_hisat_alignments -> merge	[_draw_="c 7 -#000000 B 4 1092.24 215.5 1063.11 208.58 1021.86 198.79 990.76 191.4 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 991.53 189.06 984.16 189.83 990.4 193.83 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1064.5 200.6 0 23 4 -bams ",
		label=bams,
		lp="1064.5,202.5",
		pos="e,982.69,189.48 1092.2,215.5 1063.1,208.58 1021.9,198.79 990.76,191.4"];
	bam_to_trimmed_fastq_and_hisat_alignments -> kallisto	[_draw_="c 7 -#000000 B 7 1247.95 218.22 1322.34 213.28 1410.15 204.58 1445 190 1466.17 181.14 1485.89 163.22 1498.17 150.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1499.87 152.22 1502.84 145.43 1496.28 148.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1489 178.1 0 26 6 -fastqs ",
		label=fastqs,
		lp="1489,180",
		pos="e,1503.9,144.32 1248,218.22 1322.3,213.28 1410.2,204.58 1445,190 1466.2,181.14 1485.9,163.22 1498.2,150.45"];
	index_bam -> generate_qc_metrics	[_draw_="c 7 -#000000 B 7 962.25 125.6 968.78 120.01 977.95 112.83 987 108 990.89 105.92 995.09 104.02 999.34 102.31 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 999.88 104.73 1005.57 99.97 998.15 100.14 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 996.5 110.6 0 19 3 -bam ",
		label=bam,
		lp="996.5,112.5",
		pos="e,1007,99.435 962.25,125.6 968.78,120.01 977.95,112.83 987,108 990.89,105.92 995.09,104.02 999.34,102.31"];
	generate_qc_metrics -> metrics	[_draw_="c 7 -#000000 B 4 1044.71 80.71 1050.14 74.88 1057.53 66.93 1063.87 60.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1065.31 62.17 1068.28 55.37 1061.72 58.83 ",
		pos="e,1069.3,54.265 1044.7,80.709 1050.1,74.879 1057.5,66.934 1063.9,60.117"];
	generate_qc_metrics -> chart	[_draw_="c 7 -#000000 B 7 1063.11 80.56 1075.78 76.04 1091.03 69.97 1104 63 1106.34 61.74 1108.72 60.29 1111.02 58.79 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1112.02 61.08 1116.37 55.07 1109.22 57.05 ",
		pos="e,1117.6,54.203 1063.1,80.557 1075.8,76.04 1091,69.971 1104,63 1106.3,61.743 1108.7,60.295 1111,58.786"];
	kallisto -> fusion_evidence	[_draw_="c 7 -#000000 B 13 1487.06 125.57 1473.92 119.97 1458.08 111.51 1447 100 1437.08 89.69 1444.16 79.96 1433 71 1420.89 61.29 1413.95 \
67.19 1399 63 1392.63 61.21 1385.89 59.14 1379.43 57.07 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1380.32 54.79 1372.91 54.94 1378.8 59.44 ",
		pos="e,1371.5,54.473 1487.1,125.57 1473.9,119.97 1458.1,111.51 1447,100 1437.1,89.686 1444.2,79.956 1433,71 1420.9,61.286 1413.9,67.193 \
1399,63 1392.6,61.214 1385.9,59.142 1379.4,57.073"];
	kallisto -> transcript_abundance_tsv	[_draw_="c 7 -#000000 B 7 1483.08 125.54 1474.11 122.82 1464.13 119.79 1455 117 1385.68 95.83 1304.73 70.9 1259.41 56.92 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1260.23 54.61 1252.82 54.89 1258.78 59.3 ",
		pos="e,1251.4,54.446 1483.1,125.54 1474.1,122.82 1464.1,119.79 1455,117 1385.7,95.826 1304.7,70.899 1259.4,56.925"];
	kallisto -> transcript_abundance_h5	[_draw_="c 7 -#000000 B 7 1555.46 129.5 1571.18 126.92 1586.17 122.96 1591 117 1603.97 100.98 1593 76.9 1583.15 61.32 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1585.29 60.12 1579.35 55.68 1581.23 62.85 ",
		pos="e,1578.5,54.421 1555.5,129.5 1571.2,126.92 1586.2,122.96 1591,117 1604,100.98 1593,76.901 1583.1,61.317"];
	kallisto -> transcript_to_gene	[_draw_="c 7 -#000000 B 7 1512.1 125.77 1512.82 120.65 1513.85 113.92 1515 108 1515.03 107.82 1515.07 107.64 1515.11 107.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1517.47 108.11 1516.59 100.75 1512.69 107.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1554.5 110.6 0 79 19 -transcript_table_h5 ",
		label=transcript_table_h5,
		lp="1554.5,112.5",
		pos="e,1516.9,99.273 1512.1,125.77 1512.8,120.65 1513.9,113.92 1515,108 1515,107.82 1515.1,107.64 1515.1,107.46"];
	transcript_to_gene -> gene_abundance	[_draw_="c 7 -#000000 B 4 1505.17 80.5 1495.1 74.32 1481.29 65.84 1469.89 58.83 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1471.34 56.85 1464.09 55.27 1468.77 61.02 ",
		pos="e,1462.8,54.478 1505.2,80.505 1495.1,74.321 1481.3,65.838 1469.9,58.83"];
	mark_dup -> final_bam	[_draw_="c 7 -#000000 B 7 839.02 125.59 868.76 112.42 928.02 86.03 978 63 981.48 61.39 985.15 59.69 988.75 58 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 989.8 60.21 995.08 55.01 987.71 55.78 ",
		pos="e,996.45,54.367 839.02,125.59 868.76,112.42 928.02,86.029 978,63 981.48,61.395 985.15,59.687 988.75,57.995"];
	mark_dup -> stringtie	[_draw_="c 7 -#000000 B 4 804.98 125.5 793.95 119.26 778.78 110.68 766.32 103.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 767.6 101.54 760.3 100.22 765.19 105.8 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 797.5 110.6 0 19 3 -bam ",
		label=bam,
		lp="797.5,112.5",
		pos="e,758.98,99.478 804.98,125.5 793.95,119.26 778.78,110.68 766.32,103.63"];
	default1	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 775.5 170.5 775.5 189.5 852.5 189.5 852.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 814 177.5 0 61 12 -\"coordinate\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"coordinate\"",
		pos="814,180",
		rects="775.5,170.5,852.5,189.5",
		width=1.0694];
	default1 -> mark_dup	[_draw_="c 7 -#000000 B 4 815.16 170.71 815.87 165.59 816.81 158.85 817.67 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 820.1 153.04 818.64 145.76 815.24 152.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 850.5 155.6 0 67 16 -input_sort_order ",
		label=input_sort_order,
		lp="850.5,157.5",
		pos="e,818.85,144.27 815.16,170.71 815.87,165.59 816.81,158.85 817.67,152.67"];
}