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germline_vep_summary [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 11352.5 35.5 11352.5 54.5 11487.5 54.5 11487.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 11420 42.5 0 119 20 -germline_vep_summary ", fillcolor="#94DDF4", height=0.27778, label=germline_vep_summary, pos="11420,45", rects="11352,35.5,11488,54.5", width=1.875]; normal_per_target_coverage_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3886.5 35.5 3886.5 54.5 4085.5 54.5 4085.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3986 42.5 0 183 34 -normal_per_target_coverage_metrics ", fillcolor="#94DDF4", height=0.27778, label=normal_per_target_coverage_metrics, pos="3986,45", rects="3886.5,35.5,4085.5,54.5", width=2.7639]; chart [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 633.5 35.5 633.5 54.5 674.5 54.5 674.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 654 42.5 0 25 5 -chart ", fillcolor="#94DDF4", height=0.27778, label=chart, pos="654,45", rects="633.5,35.5,674.5,54.5", width=0.56944]; per_base_hs_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 11491.5 35.5 11491.5 54.5 11610.5 54.5 11610.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 11551 42.5 0 103 19 -per_base_hs_metrics ", fillcolor="#94DDF4", height=0.27778, label=per_base_hs_metrics, pos="11551,45", rects="11492,35.5,11610,54.5", width=1.6528]; varscan_unfiltered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4089.5 35.5 4089.5 54.5 4216.5 54.5 4216.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4153 42.5 0 111 22 -varscan_unfiltered_vcf ", fillcolor="#94DDF4", height=0.27778, label=varscan_unfiltered_vcf, pos="4153,45", rects="4089.5,35.5,4216.5,54.5", width=1.7639]; tumor_verify_bam_id_depth [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4220.5 35.5 4220.5 54.5 4373.5 54.5 4373.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4297 42.5 0 137 25 -tumor_verify_bam_id_depth ", fillcolor="#94DDF4", height=0.27778, label=tumor_verify_bam_id_depth, pos="4297,45", rects="4220.5,35.5,4373.5,54.5", width=2.125]; normal_snv_bam_readcount_tsv [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4377.5 35.5 4377.5 54.5 4552.5 54.5 4552.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4465 42.5 0 159 28 -normal_snv_bam_readcount_tsv ", fillcolor="#94DDF4", height=0.27778, label=normal_snv_bam_readcount_tsv, pos="4465,45", rects="4377.5,35.5,4552.5,54.5", width=2.4306]; somalier_concordance_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4557 35.5 4557 54.5 4725 54.5 4725 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4641 42.5 0 152 28 -somalier_concordance_metrics ", fillcolor="#94DDF4", height=0.27778, label=somalier_concordance_metrics, pos="4641,45", rects="4557,35.5,4725,54.5", width=2.3333]; intervals_target [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4729 35.5 4729 54.5 4823 54.5 4823 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4776 42.5 0 78 16 -intervals_target ", fillcolor="#94DDF4", height=0.27778, label=intervals_target, pos="4776,45", rects="4729,35.5,4823,54.5", width=1.3056]; mhc_ii_all_epitopes [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 12939.5 35.5 12939.5 54.5 13052.5 54.5 13052.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 12996 42.5 0 97 19 -mhc_ii_all_epitopes ", fillcolor="#94DDF4", height=0.27778, label=mhc_ii_all_epitopes, pos="12996,45", rects="12940,35.5,13052,54.5", width=1.5694]; coding_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 11614.5 35.5 11614.5 54.5 11683.5 54.5 11683.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 11649 42.5 0 53 10 -coding_vcf ", fillcolor="#94DDF4", height=0.27778, label=coding_vcf, pos="11649,45", rects="11614,35.5,11684,54.5", width=0.95833]; normal_hs_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4827 35.5 4827 54.5 4937 54.5 4937 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4882 42.5 0 94 17 -normal_hs_metrics ", fillcolor="#94DDF4", height=0.27778, label=normal_hs_metrics, pos="4882,45", rects="4827,35.5,4937,54.5", width=1.5278]; mutect_filtered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4941.5 35.5 4941.5 54.5 5052.5 54.5 5052.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4997 42.5 0 95 19 -mutect_filtered_vcf ", fillcolor="#94DDF4", height=0.27778, label=mutect_filtered_vcf, pos="4997,45", rects="4941.5,35.5,5052.5,54.5", width=1.5417]; cn_diagram [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5057 35.5 5057 54.5 5131 54.5 5131 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5094 42.5 0 58 10 -cn_diagram ", fillcolor="#94DDF4", height=0.27778, label=cn_diagram, pos="5094,45", rects="5057,35.5,5131,54.5", width=1.0278]; somalier_concordance_statistics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5135 35.5 5135 54.5 5311 54.5 5311 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5223 42.5 0 160 31 -somalier_concordance_statistics ", fillcolor="#94DDF4", height=0.27778, label=somalier_concordance_statistics, pos="5223,45", rects="5135,35.5,5311,54.5", width=2.4444]; tumor_segmented_ratios [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5315.5 35.5 5315.5 54.5 5454.5 54.5 5454.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5385 42.5 0 123 22 -tumor_segmented_ratios ", fillcolor="#94DDF4", height=0.27778, label=tumor_segmented_ratios, pos="5385,45", rects="5315.5,35.5,5454.5,54.5", width=1.9306]; phased_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 11893 35.5 11893 54.5 11965 54.5 11965 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 11929 42.5 0 56 10 -phased_vcf ", fillcolor="#94DDF4", height=0.27778, label=phased_vcf, pos="11929,45", rects="11893,35.5,11965,54.5", width=1]; cn_scatter_plot [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5458.5 35.5 5458.5 54.5 5549.5 54.5 5549.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5504 42.5 0 75 15 -cn_scatter_plot ", fillcolor="#94DDF4", height=0.27778, label=cn_scatter_plot, pos="5504,45", rects="5458.5,35.5,5549.5,54.5", width=1.2639]; transcript_abundance_tsv [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 679 35.5 679 54.5 821 54.5 821 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 750 42.5 0 126 24 -transcript_abundance_tsv ", fillcolor="#94DDF4", height=0.27778, label=transcript_abundance_tsv, pos="750,45", rects="679,35.5,821,54.5", width=1.9722]; metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 825.5 35.5 825.5 54.5 878.5 54.5 878.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 852 42.5 0 37 7 -metrics ", fillcolor="#94DDF4", height=0.27778, label=metrics, pos="852,45", rects="825.5,35.5,878.5,54.5", width=0.73611]; annotated_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 13057 35.5 13057 54.5 13143 54.5 13143 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 13100 42.5 0 70 13 -annotated_vcf ", fillcolor="#94DDF4", height=0.27778, label=annotated_vcf, pos="13100,45", rects="13057,35.5,13143,54.5", width=1.1944]; normal_per_target_hs_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5553.5 35.5 5553.5 54.5 5718.5 54.5 5718.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5636 42.5 0 149 28 -normal_per_target_hs_metrics ", fillcolor="#94DDF4", height=0.27778, label=normal_per_target_hs_metrics, pos="5636,45", rects="5553.5,35.5,5718.5,54.5", width=2.2917]; pindel_filtered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5722.5 35.5 5722.5 54.5 5829.5 54.5 5829.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5776 42.5 0 91 19 -pindel_filtered_vcf ", fillcolor="#94DDF4", height=0.27778, label=pindel_filtered_vcf, pos="5776,45", rects="5722.5,35.5,5829.5,54.5", width=1.4861]; optitype_tsv [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 11687.5 35.5 11687.5 54.5 11764.5 54.5 11764.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 11726 42.5 0 61 12 -optitype_tsv ", fillcolor="#94DDF4", height=0.27778, label=optitype_tsv, pos="11726,45", rects="11688,35.5,11764,54.5", width=1.0694]; mhc_ii_filtered_epitopes [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 13147 35.5 13147 54.5 13283 54.5 13283 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 13215 42.5 0 120 24 -mhc_ii_filtered_epitopes ", fillcolor="#94DDF4", height=0.27778, label=mhc_ii_filtered_epitopes, pos="13215,45", rects="13147,35.5,13283,54.5", width=1.8889]; annotated_tsv [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 13287 35.5 13287 54.5 13373 54.5 13373 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 13330 42.5 0 70 13 -annotated_tsv ", fillcolor="#94DDF4", height=0.27778, label=annotated_tsv, pos="13330,45", rects="13287,35.5,13373,54.5", width=1.1944]; fusion_evidence [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 883 35.5 883 54.5 979 54.5 979 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 931 42.5 0 80 15 -fusion_evidence ", fillcolor="#94DDF4", height=0.27778, label=fusion_evidence, pos="931,45", rects="883,35.5,979,54.5", width=1.3333]; tumor_target_coverage [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5833.5 35.5 5833.5 54.5 5964.5 54.5 5964.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5899 42.5 0 115 21 -tumor_target_coverage ", fillcolor="#94DDF4", height=0.27778, label=tumor_target_coverage, pos="5899,45", rects="5833.5,35.5,5964.5,54.5", width=1.8194]; tumor_snv_bam_readcount_tsv [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5969 35.5 5969 54.5 6139 54.5 6139 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 6054 42.5 0 154 27 -tumor_snv_bam_readcount_tsv ", fillcolor="#94DDF4", height=0.27778, label=tumor_snv_bam_readcount_tsv, pos="6054,45", rects="5969,35.5,6139,54.5", width=2.3611]; mhc_i_ranked_epitopes [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 11969.5 35.5 11969.5 54.5 12100.5 54.5 12100.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 12035 42.5 0 115 21 -mhc_i_ranked_epitopes ", fillcolor="#94DDF4", height=0.27778, label=mhc_i_ranked_epitopes, pos="12035,45", rects="11970,35.5,12100,54.5", width=1.8194]; normal_antitarget_coverage [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 6143.5 35.5 6143.5 54.5 6298.5 54.5 6298.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 6221 42.5 0 139 26 -normal_antitarget_coverage ", fillcolor="#94DDF4", height=0.27778, label=normal_antitarget_coverage, pos="6221,45", rects="6143.5,35.5,6298.5,54.5", width=2.1528]; 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manta_output_contigs [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 6878.5 223.5 6878.5 242.5 7003.5 242.5 7003.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 6941 230.5 0 109 20 -manta_output_contigs ", fillcolor="#94DDF4", height=0.27778, label=manta_output_contigs, pos="6941,233", rects="6878.5,223.5,7003.5,242.5", width=1.7361]; omni_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 9226 223.5 9226 242.5 9288 242.5 9288 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 9257 230.5 0 46 8 -omni_vcf ", fillcolor="#94DDF4", height=0.27778, label=omni_vcf, pos="9257,233", rects="9226,223.5,9288,242.5", width=0.86111]; normal_cov [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 11570 223.5 11570 242.5 11644 242.5 11644 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 11607 230.5 0 58 10 -normal_cov ", fillcolor="#94DDF4", height=0.27778, label=normal_cov, pos="11607,233", rects="11570,223.5,11644,242.5", width=1.0278]; variants_to_table_fields [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 9534.5 223.5 9534.5 242.5 9667.5 242.5 9667.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 9601 230.5 0 117 24 -variants_to_table_fields ", fillcolor="#94DDF4", height=0.27778, label=variants_to_table_fields, pos="9601,233", rects="9534.5,223.5,9667.5,242.5", width=1.8472]; qc_minimum_base_quality [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 9292 223.5 9292 242.5 9440 242.5 9440 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 9366 230.5 0 132 23 -qc_minimum_base_quality ", fillcolor="#94DDF4", height=0.27778, label=qc_minimum_base_quality, pos="9366,233", rects="9292,223.5,9440,242.5", width=2.0556]; read_group_fields [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3958.5 223.5 3958.5 242.5 4061.5 242.5 4061.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4010 230.5 0 87 17 -read_group_fields ", fillcolor="#94DDF4", height=0.27778, label=read_group_fields, pos="4010,233", rects="3958.5,223.5,4061.5,242.5", width=1.4306]; gvcf_gq_bands [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 10299.5 223.5 10299.5 242.5 10388.5 242.5 10388.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 10344 230.5 0 73 13 -gvcf_gq_bands ", fillcolor="#94DDF4", height=0.27778, label=gvcf_gq_bands, pos="10344,233", rects="10300,223.5,10388,242.5", width=1.2361]; cle_vcf_filter [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 7007.5 223.5 7007.5 242.5 7086.5 242.5 7086.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 7047 230.5 0 63 14 -cle_vcf_filter ", fillcolor="#94DDF4", height=0.27778, label=cle_vcf_filter, pos="7047,233", rects="7007.5,223.5,7086.5,242.5", width=1.0972]; vep_cache_dir [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 9444 223.5 9444 242.5 9530 242.5 9530 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 9487 230.5 0 70 13 -vep_cache_dir ", fillcolor="#94DDF4", height=0.27778, label=vep_cache_dir, pos="9487,233", rects="9444,223.5,9530,242.5", width=1.1944]; trna_cov [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 11648.5 223.5 11648.5 242.5 11707.5 242.5 11707.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 11678 230.5 0 43 8 -trna_cov ", fillcolor="#94DDF4", height=0.27778, label=trna_cov, pos="11678,233", rects="11648,223.5,11708,242.5", width=0.81944]; optitype_name [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 10393 223.5 10393 242.5 10483 242.5 10483 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 10438 230.5 0 74 13 -optitype_name ", fillcolor="#94DDF4", height=0.27778, label=optitype_name, pos="10438,233", rects="10393,223.5,10483,242.5", width=1.25]; strelka_cpu_reserved [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 7091 223.5 7091 242.5 7211 242.5 7211 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 7151 230.5 0 104 20 -strelka_cpu_reserved ", fillcolor="#94DDF4", height=0.27778, label=strelka_cpu_reserved, pos="7151,233", rects="7091,223.5,7211,242.5", width=1.6667]; rna_bams [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4065.5 223.5 4065.5 242.5 4130.5 242.5 4130.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4098 230.5 0 49 8 -rna_bams ", fillcolor="#94DDF4", height=0.27778, label=rna_bams, pos="4098,233", rects="4065.5,223.5,4130.5,242.5", width=0.90278]; downstream_sequence_length [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 11711.5 223.5 11711.5 242.5 11876.5 242.5 11876.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 11794 230.5 0 149 26 -downstream_sequence_length ", fillcolor="#94DDF4", height=0.27778, label=downstream_sequence_length, pos="11794,233", rects="11712,223.5,11876,242.5", width=2.2917]; cosmic_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 7215.5 223.5 7215.5 242.5 7286.5 242.5 7286.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 7251 230.5 0 55 10 -cosmic_vcf ", fillcolor="#94DDF4", height=0.27778, label=cosmic_vcf, pos="7251,233", rects="7215.5,223.5,7286.5,242.5", width=0.98611]; per_target_intervals [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 7290.5 223.5 7290.5 242.5 7405.5 242.5 7405.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 7348 230.5 0 99 20 -per_target_intervals ", fillcolor="#94DDF4", height=0.27778, label=per_target_intervals, pos="7348,233", rects="7290.5,223.5,7405.5,242.5", width=1.5972]; 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allele_specific_binding_thresholds [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 12205.5 223.5 12205.5 242.5 12388.5 242.5 12388.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 12297 230.5 0 167 34 -allele_specific_binding_thresholds ", fillcolor="#94DDF4", height=0.27778, label=allele_specific_binding_thresholds, pos="12297,233", rects="12206,223.5,12388,242.5", width=2.5417]; docm_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4331 223.5 4331 242.5 4395 242.5 4395 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4363 230.5 0 48 8 -docm_vcf ", fillcolor="#94DDF4", height=0.27778, label=docm_vcf, pos="4363,233", rects="4331,223.5,4395,242.5", width=0.88889]; net_chop_method [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 12393 223.5 12393 242.5 12497 242.5 12497 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 12445 230.5 0 88 15 -net_chop_method ", fillcolor="#94DDF4", height=0.27778, label=net_chop_method, pos="12445,233", rects="12393,223.5,12497,242.5", width=1.4444]; normal_name [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4399 223.5 4399 242.5 4483 242.5 4483 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4441 230.5 0 68 11 -normal_name ", fillcolor="#94DDF4", height=0.27778, label=normal_name, pos="4441,233", rects="4399,223.5,4483,242.5", width=1.1667]; 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prediction_algorithms [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 12710.5 223.5 12710.5 242.5 12833.5 242.5 12833.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 12772 230.5 0 107 21 -prediction_algorithms ", fillcolor="#94DDF4", height=0.27778, label=prediction_algorithms, pos="12772,233", rects="12710,223.5,12834,242.5", width=1.7083]; varscan_min_coverage [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4487.5 223.5 4487.5 242.5 4616.5 242.5 4616.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4552 230.5 0 113 20 -varscan_min_coverage ", fillcolor="#94DDF4", height=0.27778, label=varscan_min_coverage, pos="4552,233", rects="4487.5,223.5,4616.5,242.5", width=1.7917]; netmhc_stab [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 12838 223.5 12838 242.5 12918 242.5 12918 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 12878 230.5 0 64 11 -netmhc_stab ", fillcolor="#94DDF4", height=0.27778, label=netmhc_stab, pos="12878,233", rects="12838,223.5,12918,242.5", width=1.1111]; known_indels [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 8271.5 223.5 8271.5 242.5 8354.5 242.5 8354.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 8313 230.5 0 67 12 -known_indels ", fillcolor="#94DDF4", height=0.27778, label=known_indels, pos="8313,233", rects="8271.5,223.5,8354.5,242.5", width=1.1528]; 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pvacseq_threads [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 13003.5 223.5 13003.5 242.5 13102.5 242.5 13102.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 13053 230.5 0 83 15 -pvacseq_threads ", fillcolor="#94DDF4", height=0.27778, label=pvacseq_threads, pos="13053,233", rects="13004,223.5,13102,242.5", width=1.375]; normal_readgroups [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 8403.5 223.5 8403.5 242.5 8514.5 242.5 8514.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 8459 230.5 0 95 17 -normal_readgroups ", fillcolor="#94DDF4", height=0.27778, label=normal_readgroups, pos="8459,233", rects="8403.5,223.5,8514.5,242.5", width=1.5417]; mutect_max_alt_allele_in_normal_fraction [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5852.5 223.5 5852.5 242.5 6077.5 242.5 6077.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5965 230.5 0 209 40 -mutect_max_alt_allele_in_normal_fraction ", fillcolor="#94DDF4", height=0.27778, label=mutect_max_alt_allele_in_normal_fraction, pos="5965,233", rects="5852.5,223.5,6077.5,242.5", width=3.125]; vep_assembly [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 8518.5 223.5 8518.5 242.5 8605.5 242.5 8605.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 8562 230.5 0 71 12 -vep_assembly ", fillcolor="#94DDF4", height=0.27778, label=vep_assembly, pos="8562,233", rects="8518.5,223.5,8605.5,242.5", width=1.2083]; ribosomal_intervals [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2699.5 223.5 2699.5 242.5 2812.5 242.5 2812.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2756 230.5 0 97 19 -ribosomal_intervals ", fillcolor="#94DDF4", height=0.27778, label=ribosomal_intervals, pos="2756,233", rects="2699.5,223.5,2812.5,242.5", width=1.5694]; maximum_transcript_support_level [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 13107 223.5 13107 242.5 13297 242.5 13297 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 13202 230.5 0 174 32 -maximum_transcript_support_level ", fillcolor="#94DDF4", height=0.27778, label=maximum_transcript_support_level, pos="13202,233", rects="13107,223.5,13297,242.5", width=2.6389]; strand [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2816.5 223.5 2816.5 242.5 2863.5 242.5 2863.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2840 230.5 0 31 6 -strand ", fillcolor="#94DDF4", height=0.27778, label=strand, pos="2840,233", rects="2816.5,223.5,2863.5,242.5", width=0.65278]; trimming_adapter_min_overlap [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2868 223.5 2868 242.5 3038 242.5 3038 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2953 230.5 0 154 28 -trimming_adapter_min_overlap ", fillcolor="#94DDF4", height=0.27778, label=trimming_adapter_min_overlap, pos="2953,233", rects="2868,223.5,3038,242.5", width=2.3611]; expn_val [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 13301.5 223.5 13301.5 242.5 13362.5 242.5 13362.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 13332 230.5 0 45 8 -expn_val ", fillcolor="#94DDF4", height=0.27778, label=expn_val, pos="13332,233", rects="13302,223.5,13362,242.5", width=0.84722]; gene_transcript_lookup_table [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3042 223.5 3042 242.5 3202 242.5 3202 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3122 230.5 0 144 28 -gene_transcript_lookup_table ", fillcolor="#94DDF4", height=0.27778, label=gene_transcript_lookup_table, pos="3122,233", rects="3042,223.5,3202,242.5", width=2.2222]; 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minimum_fold_change [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 13367 223.5 13367 242.5 13495 242.5 13495 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 13431 230.5 0 112 19 -minimum_fold_change ", fillcolor="#94DDF4", height=0.27778, label=minimum_fold_change, pos="13431,233", rects="13367,223.5,13495,242.5", width=1.7778]; mutect_scatter_count [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 6082 223.5 6082 242.5 6204 242.5 6204 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 6143 230.5 0 106 20 -mutect_scatter_count ", fillcolor="#94DDF4", height=0.27778, label=mutect_scatter_count, pos="6143,233", rects="6082,223.5,6204,242.5", width=1.6944]; somalier_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 6208 223.5 6208 242.5 6288 242.5 6288 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 6248 230.5 0 64 12 -somalier_vcf ", fillcolor="#94DDF4", height=0.27778, label=somalier_vcf, pos="6248,233", rects="6208,223.5,6288,242.5", width=1.1111]; binding_threshold [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 10645 223.5 10645 242.5 10749 242.5 10749 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 10697 230.5 0 88 17 -binding_threshold ", fillcolor="#94DDF4", height=0.27778, label=binding_threshold, pos="10697,233", rects="10645,223.5,10749,242.5", width=1.4444]; manta_non_wgs [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 6292 223.5 6292 242.5 6388 242.5 6388 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 6340 230.5 0 80 13 -manta_non_wgs ", fillcolor="#94DDF4", height=0.27778, label=manta_non_wgs, pos="6340,233", rects="6292,223.5,6388,242.5", width=1.3333]; trimming_adapter_trim_end [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3444.5 223.5 3444.5 242.5 3597.5 242.5 3597.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3521 230.5 0 137 25 -trimming_adapter_trim_end ", fillcolor="#94DDF4", height=0.27778, label=trimming_adapter_trim_end, pos="3521,233", rects="3444.5,223.5,3597.5,242.5", width=2.125]; phased_proximal_variants_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3788 223.5 3788 242.5 3954 242.5 3954 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3871 230.5 0 150 28 -phased_proximal_variants_vcf ", fillcolor="#94DDF4", height=0.27778, label=phased_proximal_variants_vcf, pos="3871,233", rects="3788,223.5,3954,242.5", width=2.3056]; normal_vaf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 10753 223.5 10753 242.5 10825 242.5 10825 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 10789 230.5 0 56 10 -normal_vaf ", fillcolor="#94DDF4", height=0.27778, label=normal_vaf, pos="10789,233", rects="10753,223.5,10825,242.5", width=1]; trna_vaf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 10829.5 223.5 10829.5 242.5 10886.5 242.5 10886.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 10858 230.5 0 41 8 -trna_vaf ", fillcolor="#94DDF4", height=0.27778, label=trna_vaf, pos="10858,233", rects="10830,223.5,10886,242.5", width=0.79167]; tumor_name [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4974.5 223.5 4974.5 242.5 5053.5 242.5 5053.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5014 230.5 0 63 10 -tumor_name ", fillcolor="#94DDF4", height=0.27778, label=tumor_name, pos="5014,233", rects="4974.5,223.5,5053.5,242.5", width=1.0972]; tdna_vaf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 10890.5 223.5 10890.5 242.5 10949.5 242.5 10949.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 10920 230.5 0 43 8 -tdna_vaf ", fillcolor="#94DDF4", height=0.27778, label=tdna_vaf, pos="10920,233", rects="10890,223.5,10950,242.5", width=0.81944]; manta_call_regions [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5058 223.5 5058 242.5 5170 242.5 5170 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5114 230.5 0 96 18 -manta_call_regions ", fillcolor="#94DDF4", height=0.27778, label=manta_call_regions, pos="5114,233", rects="5058,223.5,5170,242.5", width=1.5556]; top_score_metric [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 10953.5 223.5 10953.5 242.5 11054.5 242.5 11054.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 11004 230.5 0 85 16 -top_score_metric ", fillcolor="#94DDF4", height=0.27778, label=top_score_metric, pos="11004,233", rects="10954,223.5,11054,242.5", width=1.4028]; peptide_sequence_length [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 11058.5 223.5 11058.5 242.5 11199.5 242.5 11199.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 11129 230.5 0 125 23 -peptide_sequence_length ", fillcolor="#94DDF4", height=0.27778, label=peptide_sequence_length, pos="11129,233", rects="11058,223.5,11200,242.5", width=1.9583]; additional_report_columns [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 11204 223.5 11204 242.5 11350 242.5 11350 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 11277 230.5 0 130 25 -additional_report_columns ", fillcolor="#94DDF4", height=0.27778, label=additional_report_columns, pos="11277,233", rects="11204,223.5,11350,242.5", width=2.0278]; sample_name [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3602 223.5 3602 242.5 3688 242.5 3688 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3645 230.5 0 70 11 -sample_name ", fillcolor="#94DDF4", height=0.27778, label=sample_name, pos="3645,233", rects="3602,223.5,3688,242.5", width=1.1944]; annotate_coding_only [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 8700 223.5 8700 242.5 8824 242.5 8824 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 8762 230.5 0 108 20 -annotate_coding_only ", fillcolor="#94DDF4", height=0.27778, label=annotate_coding_only, pos="8762,233", rects="8700,223.5,8824,242.5", width=1.7222]; rna_readgroups [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3692 223.5 3692 242.5 3784 242.5 3784 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3738 230.5 0 76 14 -rna_readgroups ", fillcolor="#94DDF4", height=0.27778, label=rna_readgroups, pos="3738,233", rects="3692,223.5,3784,242.5", width=1.2778]; filter_docm_variants [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5354 223.5 5354 242.5 5470 242.5 5470 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5412 230.5 0 100 20 -filter_docm_variants ", fillcolor="#94DDF4", height=0.27778, label=filter_docm_variants, pos="5412,233", rects="5354,223.5,5470,242.5", width=1.6111]; epitope_lengths [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 11354.5 223.5 11354.5 242.5 11449.5 242.5 11449.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 11402 230.5 0 79 15 -epitope_lengths ", fillcolor="#94DDF4", height=0.27778, label=epitope_lengths, pos="11402,233", rects="11354,223.5,11450,242.5", width=1.3194]; } rnaseq [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 2641.5 170.5 2641.5 189.5 2954.5 189.5 2954.5 170.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2798 177.5 0 297 56 -RNA-Seq alignment and transcript/gene abundance workflow ", fillcolor="#F3CEA1", height=0.27778, label="RNA-Seq alignment and transcript/gene abundance workflow", pos="2798,180", rects="2641.5,170.5,2954.5,189.5", width=4.3472]; reference_annotation -> rnaseq [_draw_="c 7 -#000000 B 7 2354.74 223.78 2364.12 215.54 2379.86 203.34 2396 198 2418.74 190.47 2532.48 186.13 2633.21 183.72 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2633.21 186.17 2640.15 183.56 2633.1 181.27 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2440.5 200.6 0 89 20 -reference_annotation ", label=reference_annotation, lp="2440.5,202.5", pos="e,2641.7,183.52 2354.7,223.78 2364.1,215.54 2379.9,203.34 2396,198 2418.7,190.47 2532.5,186.13 2633.2,183.72"]; somatic [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 5942.5 170.5 5942.5 189.5 6193.5 189.5 6193.5 170.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 6068 177.5 0 235 45 -exome alignment and somatic variant detection ", fillcolor="#F3CEA1", height=0.27778, label="exome alignment and somatic variant detection", pos="6068,180", rects="5942.5,170.5,6193.5,189.5", width=3.4861]; varscan_p_value -> somatic [_draw_="c 7 -#000000 B 10 6419.43 223.52 6409.95 220.2 6398.58 216.77 6388 215 6377.23 213.2 6002.64 214.8 5995 207 5989.25 201.13 5990.4 \ 196.58 5995.48 193.06 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5996.49 195.29 6001.72 190.03 5994.36 190.88 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 6029 200.6 0 68 15 -varscan_p_value ", label=varscan_p_value, lp="6029,202.5", pos="e,6003.1,189.37 6419.4,223.52 6409.9,220.2 6398.6,216.77 6388,215 6377.2,213.2 6002.6,214.8 5995,207 5989.2,201.13 5990.4,196.58 \ 5995.5,193.06"]; varscan_strand_filter -> somatic [_draw_="c 7 -#000000 B 10 6528.24 223.52 6516.95 220.2 6503.45 216.77 6491 215 6479.48 213.36 6080.76 214.66 6072 207 6069.25 204.6 6067.83 \ 201.16 6067.18 197.58 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6069.64 197.72 6066.84 190.85 6064.74 197.96 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 6114.5 200.6 0 85 21 -varscan_strand_filter ", label=varscan_strand_filter, lp="6114.5,202.5", pos="e,6066.8,189.34 6528.2,223.52 6516.9,220.2 6503.4,216.77 6491,215 6479.5,213.36 6080.8,214.66 6072,207 6069.3,204.6 6067.8,201.16 \ 6067.2,197.58"]; germline [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 9986 170.5 9986 189.5 10386 189.5 10386 170.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 10186 177.5 0 384 76 -exome alignment and germline variant detection, with optitype for HLA typing ", fillcolor="#F3CEA1", height=0.27778, label="exome alignment and germline variant detection, with optitype for HLA typing", pos="10186,180", rects="9986,170.5,10386,189.5", width=5.5556]; custom_gnomad_vcf -> germline [_draw_="c 7 -#000000 B 13 8914.38 223.57 8925.36 220.47 8938.19 217.18 8950 215 8984.71 208.6 8996.13 219.83 9029 207 9035.21 204.58 9034.69 \ 200.16 9041 198 9084.37 183.18 9659.51 180.89 9977.72 180.77 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9977.61 183.22 9984.61 180.77 9977.61 178.32 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 9083 200.6 0 84 17 -custom_gnomad_vcf ", label=custom_gnomad_vcf, lp="9083,202.5", pos="e,9986.1,180.77 8914.4,223.57 8925.4,220.47 8938.2,217.18 8950,215 8984.7,208.6 8996.1,219.83 9029,207 9035.2,204.58 9034.7,200.16 \ 9041,198 9084.4,183.18 9659.5,180.89 9977.7,180.77"]; custom_gnomad_vcf -> somatic [_draw_="c 7 -#000000 B 13 8861.56 223.55 8850.2 220.19 8836.57 216.72 8824 215 8796.59 211.25 7854.21 215.85 7828 207 7821.68 204.87 7822.31 \ 200.14 7816 198 7777.92 185.1 6604.27 181.91 6201.85 181.19 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6201.88 178.74 6194.88 181.18 6201.87 183.64 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 7870 200.6 0 84 17 -custom_gnomad_vcf ", label=custom_gnomad_vcf, lp="7870,202.5", pos="e,6193.4,181.18 8861.6,223.55 8850.2,220.19 8836.6,216.72 8824,215 8796.6,211.25 7854.2,215.85 7828,207 7821.7,204.87 7822.3,200.14 \ 7816,198 7777.9,185.1 6604.3,181.91 6201.9,181.19"]; picard_metric_accumulation_level -> germline [_draw_="c 7 -#000000 B 13 9081.51 223.57 9098.77 220.26 9119.3 216.82 9138 215 9161.45 212.72 9540.6 216.85 9562 207 9566.86 204.76 9565.15 \ 200.26 9570 198 9588.61 189.33 9806.33 184.95 9977.73 182.83 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9977.62 185.28 9984.59 182.74 9977.56 180.38 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 9639 200.6 0 138 32 -picard_metric_accumulation_level ", label=picard_metric_accumulation_level, lp="9639,202.5", pos="e,9986.1,182.72 9081.5,223.57 9098.8,220.26 9119.3,216.82 9138,215 9161.4,212.72 9540.6,216.85 9562,207 9566.9,204.76 9565.1,200.26 \ 9570,198 9588.6,189.33 9806.3,184.95 9977.7,182.83"]; picard_metric_accumulation_level -> somatic [_draw_="c 7 -#000000 B 7 9099.47 223.55 9119.47 218.35 9134.18 210.25 9122 198 9108.94 184.86 6787.88 181.7 6201.39 181.12 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6201.82 178.67 6194.82 181.11 6201.82 183.57 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 9195 200.6 0 138 32 -picard_metric_accumulation_level ", label=picard_metric_accumulation_level, lp="9195,202.5", pos="e,6193.3,181.11 9099.5,223.55 9119.5,218.35 9134.2,210.25 9122,198 9108.9,184.86 6787.9,181.7 6201.4,181.12"]; tumor_readgroups -> somatic [_draw_="c 7 -#000000 B 13 6647.76 223.51 6637.55 220.19 6625.33 216.76 6614 215 6564.8 207.37 6213.09 223.16 6166 207 6159.69 204.84 6160.09 \ 200.71 6154 198 6148.55 195.57 6142.76 193.49 6136.85 191.7 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6137.6 189.37 6130.2 189.85 6136.29 194.09 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 6204 200.6 0 76 16 -tumor_readgroups ", label=tumor_readgroups, lp="6204,202.5", pos="e,6128.7,189.44 6647.8,223.51 6637.5,220.19 6625.3,216.76 6614,215 6564.8,207.37 6213.1,223.16 6166,207 6159.7,204.84 6160.1,200.71 \ 6154,198 6148.6,195.57 6142.8,193.49 6136.8,191.7"]; pvacseq [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 11751.5 80.5 11751.5 99.5 12134.5 99.5 12134.5 80.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 11943 87.5 0 367 72 -Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs ", fillcolor="#F3CEA1", height=0.27778, label="Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs", pos="11943,90", rects="11752,80.5,12134,99.5", width=5.3194]; net_chop_threshold -> pvacseq [_draw_="c 7 -#000000 B 19 11536.04 223.5 11546.49 220.39 11558.72 217.11 11570 215 11607.3 208.02 11619.4 220.13 11655 207 11687.62 194.97 \ 11693.05 185.15 11719 162 11722.99 158.44 11722.49 155.87 11727 153 11786.07 115.39 11810.56 126.86 11878 108 11885.67 105.85 11893.87 \ 103.64 11901.78 101.56 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11902.26 103.96 11908.41 99.82 11901.02 99.22 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 11767.5 155.6 0 81 18 -net_chop_threshold ", label=net_chop_threshold, lp="11768,157.5", pos="e,11910,99.433 11536,223.5 11546,220.39 11559,217.11 11570,215 11607,208.02 11619,220.13 11655,207 11688,194.97 11693,185.15 11719,\ 162 11723,158.44 11722,155.87 11727,153 11786,115.39 11811,126.86 11878,108 11886,105.85 11894,103.64 11902,101.56"]; normal_bams -> germline [_draw_="c 7 -#000000 B 13 9198.39 223.58 9206.65 220.23 9216.63 216.76 9226 215 9278.76 205.11 9658.22 224.39 9709 207 9715.31 204.84 9714.72 \ 200.22 9721 198 9745.82 189.22 9865.94 184.97 9977.87 182.92 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9977.79 185.37 9984.74 182.8 9977.7 180.47 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 9732.5 200.6 0 23 4 -bams ", label=bams, lp="9732.5,202.5", pos="e,9986.3,182.77 9198.4,223.58 9206.7,220.23 9216.6,216.76 9226,215 9278.8,205.11 9658.2,224.39 9709,207 9715.3,204.84 9714.7,200.22 \ 9721,198 9745.8,189.22 9865.9,184.97 9977.9,182.92"]; normal_bams -> somatic [_draw_="c 7 -#000000 B 13 9200.85 223.53 9208.65 220.57 9217.65 217.38 9226 215 9243.01 210.14 9253.82 220.71 9265 207 9267.53 203.9 9267.82 \ 200.84 9265 198 9251.28 184.2 6805.34 181.53 6201.55 181.08 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6201.74 178.63 6194.74 181.08 6201.74 183.53 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 9294.5 200.6 0 55 11 -normal_bams ", label=normal_bams, lp="9294.5,202.5", pos="e,6193.2,181.08 9200.8,223.53 9208.7,220.57 9217.6,217.38 9226,215 9243,210.14 9253.8,220.71 9265,207 9267.5,203.9 9267.8,200.84 \ 9265,198 9251.3,184.2 6805.3,181.53 6201.5,181.08"]; varscan_max_normal_freq -> somatic [_draw_="c 7 -#000000 B 13 6769.4 223.53 6755.57 220.21 6739.09 216.78 6724 215 6697.9 211.93 6275.86 215.52 6251 207 6244.69 204.84 6245.21 \ 200.42 6239 198 6230.89 194.84 6217.6 192.24 6201.91 190.11 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6202.25 187.68 6195 189.23 6201.63 192.54 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 6304 200.6 0 106 23 -varscan_max_normal_freq ", label=varscan_max_normal_freq, lp="6304,202.5", pos="e,6193.5,189.03 6769.4,223.53 6755.6,220.21 6739.1,216.78 6724,215 6697.9,211.93 6275.9,215.52 6251,207 6244.7,204.84 6245.2,200.42 \ 6239,198 6230.9,194.84 6217.6,192.24 6201.9,190.11"]; manta_output_contigs -> somatic [_draw_="c 7 -#000000 B 13 6913.99 223.5 6902.15 220.18 6888.02 216.75 6875 215 6846.97 211.22 6392.76 216.15 6366 207 6359.69 204.84 6360.26 \ 200.29 6354 198 6326.18 187.8 6262.3 183.41 6201.96 181.64 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6202.05 179.19 6194.99 181.44 6201.92 184.08 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 6411.5 200.6 0 91 20 -manta_output_contigs ", label=manta_output_contigs, lp="6411.5,202.5", pos="e,6193.5,181.4 6914,223.5 6902.2,220.18 6888,216.75 6875,215 6847,211.22 6392.8,216.15 6366,207 6359.7,204.84 6360.3,200.29 6354,\ 198 6326.2,187.8 6262.3,183.41 6202,181.64"]; omni_vcf -> germline [_draw_="c 7 -#000000 B 13 9270.78 223.57 9277.02 220.22 9284.64 216.75 9292 215 9352 200.74 9788.63 226.92 9847 207 9853.31 204.85 9852.73 \ 200.27 9859 198 9871.86 193.34 9921.29 189.78 9977.97 187.15 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9977.98 189.6 9984.86 186.84 9977.76 184.71 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 9877.5 200.6 0 37 8 -omni_vcf ", label=omni_vcf, lp="9877.5,202.5", pos="e,9986.4,186.77 9270.8,223.57 9277,220.22 9284.6,216.75 9292,215 9352,200.74 9788.6,226.92 9847,207 9853.3,204.85 9852.7,200.27 \ 9859,198 9871.9,193.34 9921.3,189.78 9978,187.15"]; omni_vcf -> somatic [_draw_="c 7 -#000000 B 13 9272.74 223.53 9278.66 220.56 9285.53 217.38 9292 215 9305.35 210.09 9314.29 218.25 9323 207 9325.45 203.84 9325.82 \ 200.84 9323 198 9309.01 183.93 6811.81 181.46 6201.43 181.07 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6201.53 178.62 6194.53 181.07 6201.53 183.52 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 9342.5 200.6 0 37 8 -omni_vcf ", label=omni_vcf, lp="9342.5,202.5", pos="e,6193,181.06 9272.7,223.53 9278.7,220.56 9285.5,217.38 9292,215 9305.4,210.09 9314.3,218.25 9323,207 9325.4,203.84 9325.8,200.84 \ 9323,198 9309,183.93 6811.8,181.46 6201.4,181.07"]; normal_cov -> pvacseq [_draw_="c 7 -#000000 B 16 11624.17 223.54 11631.37 220.36 11639.93 217.02 11648 215 11683.96 206.03 11695.7 218.29 11731 207 11769.12 194.8 \ 11777.97 187.28 11809 162 11813.15 158.62 11812.74 156.24 11817 153 11846.36 130.65 11885.04 113.06 11911.76 102.41 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11912.61 104.71 11918.24 99.88 11910.83 100.14 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 11840.5 155.6 0 47 10 -normal_cov ", label=normal_cov, lp="11840,157.5", pos="e,11920,99.328 11624,223.54 11631,220.36 11640,217.02 11648,215 11684,206.03 11696,218.29 11731,207 11769,194.8 11778,187.28 11809,\ 162 11813,158.62 11813,156.24 11817,153 11846,130.65 11885,113.06 11912,102.41"]; variants_to_table_fields -> somatic [_draw_="c 7 -#000000 B 13 9632.64 223.57 9644.87 220.53 9659.02 217.3 9672 215 9687.2 212.31 9730.73 218.53 9741 207 9743.66 204.01 9743.82 \ 200.83 9741 198 9725.07 182 6859.08 181 6201.42 180.99 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6201.82 178.54 6194.82 180.99 6201.82 183.44 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 9791.5 200.6 0 97 24 -variants_to_table_fields ", label=variants_to_table_fields, lp="9791.5,202.5", pos="e,6193.3,180.99 9632.6,223.57 9644.9,220.53 9659,217.3 9672,215 9687.2,212.31 9730.7,218.53 9741,207 9743.7,204.01 9743.8,200.83 \ 9741,198 9725.1,182 6859.1,181 6201.4,180.99"]; variants_to_table_fields -> pvacseq [_draw_="c 7 -#000000 B 31 9629.75 223.56 9642.56 220.2 9657.91 216.73 9672 215 9718.82 209.25 10474.93 217.12 10521 207 10530.52 204.91 \ 10531.81 201.26 10541 198 10586.93 181.72 10598.78 176.99 10647 170 10676.48 165.72 10888.01 174.61 10915 162 10919.85 159.73 10918.15 \ 155.26 10923 153 10953.03 139.03 11191.83 160.69 11221 145 11230.56 139.86 11227.6 132.94 11235 125 11243.19 116.22 11244.73 112.15 \ 11256 108 11278.71 99.64 11548.74 95.05 11743.37 92.81 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11743.23 95.26 11750.2 92.73 11743.17 90.36 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 10971.5 155.6 0 97 24 -variants_to_table_fields ", label=variants_to_table_fields, lp="10972,157.5", pos="e,11752,92.711 9629.7,223.56 9642.6,220.2 9657.9,216.73 9672,215 9718.8,209.25 10475,217.12 10521,207 10531,204.91 10532,201.26 \ 10541,198 10587,181.72 10599,176.99 10647,170 10676,165.72 10888,174.61 10915,162 10920,159.73 10918,155.26 10923,153 10953,139.03 \ 11192,160.69 11221,145 11231,139.86 11228,132.94 11235,125 11243,116.22 11245,112.15 11256,108 11279,99.641 11549,95.048 11743,92.806"]; qc_minimum_base_quality -> germline [_draw_="c 7 -#000000 B 10 9397.63 223.57 9411.72 220.22 9428.58 216.75 9444 215 9464.26 212.71 10161.66 219.2 10178 207 10181.02 204.74 \ 10182.94 201.36 10184.14 197.78 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 10186.53 198.32 10185.54 190.97 10181.73 197.33 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 10236.5 200.6 0 107 23 -qc_minimum_base_quality ", label=qc_minimum_base_quality, lp="10236,202.5", pos="e,10186,189.49 9397.6,223.57 9411.7,220.22 9428.6,216.75 9444,215 9464.3,212.71 10162,219.2 10178,207 10181,204.74 10183,201.36 \ 10184,197.78"]; qc_minimum_base_quality -> somatic [_draw_="c 7 -#000000 B 7 9367.77 223.62 9368.88 215.74 9369 204.26 9362 198 9347.02 184.61 6817.72 181.63 6201.97 181.1 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6202 178.65 6194.99 181.09 6201.99 183.55 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 9420.5 200.6 0 107 23 -qc_minimum_base_quality ", label=qc_minimum_base_quality, lp="9420.5,202.5", pos="e,6193.5,181.09 9367.8,223.62 9368.9,215.74 9369,204.26 9362,198 9347,184.61 6817.7,181.63 6202,181.1"]; read_group_fields -> rnaseq [_draw_="c 7 -#000000 B 10 3986.74 223.55 3977.05 220.36 3965.6 217.02 3955 215 3930.81 210.39 3758.6 199.17 3734 198 3463.86 185.17 3149.44 \ 181.83 2962.44 181.07 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2962.71 178.63 2955.7 181.05 2962.69 183.53 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3904.5 200.6 0 73 17 -read_group_fields ", label=read_group_fields, lp="3904.5,202.5", pos="e,2954.2,181.04 3986.7,223.55 3977,220.36 3965.6,217.02 3955,215 3930.8,210.39 3758.6,199.17 3734,198 3463.9,185.17 3149.4,181.83 \ 2962.4,181.07"]; gvcf_gq_bands -> germline [_draw_="c 7 -#000000 B 13 10364.16 223.62 10372.88 220.36 10383.29 216.95 10393 215 10406.97 212.19 10511.24 217.39 10521 207 10523.74 204.08 \ 10523.76 200.9 10521 198 10515.77 192.5 10459.2 188.66 10394 186.04 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 10394.19 183.59 10387.1 185.77 10394 188.49 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 10553.5 200.6 0 61 13 -gvcf_gq_bands ", label=gvcf_gq_bands, lp="10554,202.5", pos="e,10386,185.71 10364,223.62 10373,220.36 10383,216.95 10393,215 10407,212.19 10511,217.39 10521,207 10524,204.08 10524,200.9 10521,\ 198 10516,192.5 10459,188.66 10394,186.04"]; cle_vcf_filter -> somatic [_draw_="c 7 -#000000 B 13 7029.86 223.57 7022.15 220.22 7012.82 216.75 7004 215 6974.68 209.19 6494.29 216.66 6466 207 6459.69 204.84 6460.28 \ 200.25 6454 198 6430.48 189.58 6303.63 185.2 6201.67 183.01 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6202.01 180.57 6194.96 182.87 6201.9 185.47 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 6491.5 200.6 0 51 14 -cle_vcf_filter ", label=cle_vcf_filter, lp="6491.5,202.5", pos="e,6193.4,182.84 7029.9,223.57 7022.2,220.22 7012.8,216.75 7004,215 6974.7,209.19 6494.3,216.66 6466,207 6459.7,204.84 6460.3,200.25 \ 6454,198 6430.5,189.58 6303.6,185.2 6201.7,183.01"]; vep_cache_dir -> germline [_draw_="c 7 -#000000 B 13 9505.81 223.56 9514.25 220.2 9524.44 216.73 9534 215 9544.39 213.12 10286.58 214.5 10294 207 10296.81 204.16 10296.6 \ 201.04 10294 198 10292.16 195.85 10289.28 193.96 10285.62 192.32 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 10286.56 190.05 10279.14 189.95 10284.88 194.65 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 10325 200.6 0 58 13 -vep_cache_dir ", label=vep_cache_dir, lp="10325,202.5", pos="e,10278,189.44 9505.8,223.56 9514.2,220.2 9524.4,216.73 9534,215 9544.4,213.12 10287,214.5 10294,207 10297,204.16 10297,201.04 10294,\ 198 10292,195.85 10289,193.96 10286,192.32"]; vep_cache_dir -> somatic [_draw_="c 7 -#000000 B 7 9486.65 223.69 9485.81 215.64 9483.16 203.81 9475 198 9458.02 185.93 6829.49 181.93 6201.58 181.15 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6201.89 178.7 6194.89 181.14 6201.89 183.6 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 9511 200.6 0 58 13 -vep_cache_dir ", label=vep_cache_dir, lp="9511,202.5", pos="e,6193.4,181.14 9486.6,223.69 9485.8,215.64 9483.2,203.81 9475,198 9458,185.93 6829.5,181.93 6201.6,181.15"]; trna_cov -> pvacseq [_draw_="c 7 -#000000 B 16 11691.73 223.6 11697.74 220.34 11705 216.93 11712 215 11735.42 208.56 11798.97 217.23 11821 207 11846.37 195.21 \ 11845.93 182.46 11865 162 11868.65 158.09 11869.21 156.78 11873 153 11890.54 135.5 11912.04 116.83 11926.55 104.6 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11927.73 106.81 11931.53 100.44 11924.59 103.05 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 11890.5 155.6 0 35 8 -trna_cov ", label=trna_cov, lp="11890,157.5", pos="e,11933,99.466 11692,223.6 11698,220.34 11705,216.93 11712,215 11735,208.56 11799,217.23 11821,207 11846,195.21 11846,182.46 11865,\ 162 11869,158.09 11869,156.78 11873,153 11891,135.5 11912,116.83 11927,104.6"]; optitype_name -> germline [_draw_="c 7 -#000000 B 13 10458.65 223.53 10467.28 220.34 10477.48 217.01 10487 215 10497.69 212.75 10577.6 215.03 10585 207 10587.71 204.06 \ 10587.77 200.89 10585 198 10577.7 190.38 10487.17 186.17 10394.19 183.84 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 10394.33 181.39 10387.28 183.67 10394.22 186.29 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 10617.5 200.6 0 61 13 -optitype_name ", label=optitype_name, lp="10618,202.5", pos="e,10386,183.63 10459,223.53 10467,220.34 10477,217.01 10487,215 10498,212.75 10578,215.03 10585,207 10588,204.06 10588,200.89 10585,\ 198 10578,190.38 10487,186.17 10394,183.84"]; strelka_cpu_reserved -> somatic [_draw_="c 7 -#000000 B 13 7125.14 223.58 7113.6 220.23 7099.76 216.76 7087 215 7056.12 210.74 6555.5 217.07 6526 207 6519.69 204.85 6520.28 \ 200.23 6514 198 6485.18 187.78 6322.29 183.7 6201.65 182.07 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6201.95 179.63 6194.91 181.98 6201.88 184.53 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 6569.5 200.6 0 87 20 -strelka_cpu_reserved ", label=strelka_cpu_reserved, lp="6569.5,202.5", pos="e,6193.4,181.96 7125.1,223.58 7113.6,220.23 7099.8,216.76 7087,215 7056.1,210.74 6555.5,217.07 6526,207 6519.7,204.85 6520.3,200.23 \ 6514,198 6485.2,187.78 6322.3,183.7 6201.6,182.07"]; rna_bams -> rnaseq [_draw_="c 7 -#000000 B 13 4083.03 223.51 4076.73 220.32 4069.2 216.99 4062 215 4026.7 205.26 4016.15 212.81 3980 207 3962.01 204.11 3958.1 \ 200.15 3940 198 3845.91 186.84 3255.64 182.87 2962.62 181.57 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2962.99 179.12 2955.98 181.54 2962.97 184.02 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4027 200.6 0 94 20 -instrument_data_bams ", label=instrument_data_bams, lp="4027,202.5", pos="e,2954.5,181.54 4083,223.51 4076.7,220.32 4069.2,216.99 4062,215 4026.7,205.26 4016.2,212.81 3980,207 3962,204.11 3958.1,200.15 \ 3940,198 3845.9,186.84 3255.6,182.87 2962.6,181.57"]; downstream_sequence_length -> pvacseq [_draw_="c 7 -#000000 B 10 11841.28 223.55 11853.67 219.85 11866.49 214.55 11877 207 11896.94 192.69 11896.54 183.14 11909 162 11919.79 143.69 \ 11930.01 121.43 11936.38 106.77 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11938.56 107.9 11939.06 100.5 11934.06 105.97 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 11976 155.6 0 126 26 -downstream_sequence_length ", label=downstream_sequence_length, lp="11976,157.5", pos="e,11940,99.11 11841,223.55 11854,219.85 11866,214.55 11877,207 11897,192.69 11897,183.14 11909,162 11920,143.69 11930,121.43 11936,\ 106.77"]; cosmic_vcf -> somatic [_draw_="c 7 -#000000 B 13 7235.54 223.57 7228.56 220.21 7220.09 216.74 7212 215 7179.96 208.09 6653.03 217.58 6622 207 6615.69 204.85 6616.29 \ 200.21 6610 198 6572.59 184.88 6349.76 181.66 6201.71 181 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6201.92 178.55 6194.91 180.97 6201.9 183.45 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 6644.5 200.6 0 45 10 -cosmic_vcf ", label=cosmic_vcf, lp="6644.5,202.5", pos="e,6193.4,180.96 7235.5,223.57 7228.6,220.21 7220.1,216.74 7212,215 7180,208.09 6653,217.58 6622,207 6615.7,204.85 6616.3,200.21 \ 6610,198 6572.6,184.88 6349.8,181.66 6201.7,181"]; per_target_intervals -> germline [_draw_="c 7 -#000000 B 13 7373.34 223.5 7384.45 220.18 7397.74 216.75 7410 215 7437.45 211.08 7883.8 218.56 7909 207 7913.86 204.77 7912.13 \ 200.21 7917 198 7940.3 187.43 9421.57 182.82 9977.9 181.46 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9977.52 183.91 9984.51 181.44 9977.51 179.01 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 7958 200.6 0 82 20 -per_target_intervals ", label=per_target_intervals, lp="7958,202.5", pos="e,9986,181.44 7373.3,223.5 7384.5,220.18 7397.7,216.75 7410,215 7437.4,211.08 7883.8,218.56 7909,207 7913.9,204.77 7912.1,200.21 \ 7917,198 7940.3,187.43 9421.6,182.82 9977.9,181.46"]; per_target_intervals -> somatic [_draw_="c 7 -#000000 B 13 7323.38 223.57 7312.39 220.22 7299.19 216.75 7287 215 7253.4 210.18 6708.13 217.95 6676 207 6669.69 204.85 6670.29 \ 200.2 6664 198 6621.68 183.22 6363.81 180.66 6201.43 180.55 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6201.81 178.1 6194.8 180.54 6201.8 183 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 6717 200.6 0 82 20 -per_target_intervals ", label=per_target_intervals, lp="6717,202.5", pos="e,6193.3,180.54 7323.4,223.57 7312.4,220.22 7299.2,216.75 7287,215 7253.4,210.18 6708.1,217.95 6676,207 6669.7,204.85 6670.3,200.2 \ 6664,198 6621.7,183.22 6363.8,180.66 6201.4,180.55"]; dbsnp_vcf -> germline [_draw_="c 7 -#000000 B 13 7457.62 223.58 7464.23 220.22 7472.28 216.75 7480 215 7508.18 208.61 7973.74 219.04 8000 207 8004.87 204.77 8003.13 \ 200.21 8008 198 8030.25 187.9 9437.96 183.02 9978.12 181.52 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9977.89 183.97 9984.89 181.5 9977.88 179.07 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8029 200.6 0 42 9 -dbsnp_vcf ", label=dbsnp_vcf, lp="8029,202.5", pos="e,9986.4,181.5 7457.6,223.58 7464.2,220.22 7472.3,216.75 7480,215 7508.2,208.61 7973.7,219.04 8000,207 8004.9,204.77 8003.1,200.21 \ 8008,198 8030.3,187.9 9438,183.02 9978.1,181.52"]; dbsnp_vcf -> somatic [_draw_="c 7 -#000000 B 13 7428.38 223.57 7421.77 220.21 7413.72 216.74 7406 215 7371.37 207.2 6800.61 218.44 6767 207 6760.69 204.85 6761.3 \ 200.19 6755 198 6729.4 189.11 6394.15 184.28 6201.63 182.22 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6201.68 179.77 6194.66 182.15 6201.63 184.67 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 6788 200.6 0 42 9 -dbsnp_vcf ", label=dbsnp_vcf, lp="6788,202.5", pos="e,6193.1,182.13 7428.4,223.57 7421.8,220.21 7413.7,216.74 7406,215 7371.4,207.2 6800.6,218.44 6767,207 6760.7,204.85 6761.3,200.19 \ 6755,198 6729.4,189.11 6394.1,184.28 6201.6,182.22"]; custom_clinvar_vcf -> germline [_draw_="c 7 -#000000 B 13 7560.5 223.51 7571.25 220.19 7584.11 216.76 7596 215 7621.01 211.3 8028.03 217.56 8051 207 8055.86 204.76 8054.13 \ 200.21 8059 198 8080.67 188.17 9447.22 183.15 9978.21 181.56 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9977.84 184.01 9984.84 181.54 9977.83 179.11 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8097.5 200.6 0 77 18 -custom_clinvar_vcf ", label=custom_clinvar_vcf, lp="8097.5,202.5", pos="e,9986.3,181.54 7560.5,223.51 7571.3,220.19 7584.1,216.76 7596,215 7621,211.3 8028,217.56 8051,207 8055.9,204.76 8054.1,200.21 8059,\ 198 8080.7,188.17 9447.2,183.15 9978.2,181.56"]; custom_clinvar_vcf -> somatic [_draw_="c 7 -#000000 B 13 7512.21 223.57 7501.58 220.21 7488.81 216.74 7477 215 7440.78 209.66 6852.66 218.79 6818 207 6811.69 204.85 6812.3 \ 200.18 6806 198 6778.06 188.33 6406.8 183.77 6201.79 181.97 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6201.9 179.52 6194.88 181.91 6201.85 184.42 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 6856.5 200.6 0 77 18 -custom_clinvar_vcf ", label=custom_clinvar_vcf, lp="6856.5,202.5", pos="e,6193.4,181.9 7512.2,223.57 7501.6,220.21 7488.8,216.74 7477,215 7440.8,209.66 6852.7,218.79 6818,207 6811.7,204.85 6812.3,200.18 \ 6806,198 6778.1,188.33 6406.8,183.77 6201.8,181.97"]; vep_to_table_fields -> somatic [_draw_="c 7 -#000000 B 13 9752.43 223.57 9763.01 220.39 9775.49 217.04 9787 215 9798.63 212.94 9884.97 215.66 9893 207 9895.72 204.07 9895.82 \ 200.83 9893 198 9876.37 181.29 6876.23 180.85 6201.62 180.96 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6201.82 178.51 6194.82 180.96 6201.82 183.41 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 9934.5 200.6 0 79 19 -vep_to_table_fields ", label=vep_to_table_fields, lp="9934.5,202.5", pos="e,6193.3,180.96 9752.4,223.57 9763,220.39 9775.5,217.04 9787,215 9798.6,212.94 9885,215.66 9893,207 9895.7,204.07 9895.8,200.83 \ 9893,198 9876.4,181.29 6876.2,180.85 6201.6,180.96"]; vep_to_table_fields -> pvacseq [_draw_="c 7 -#000000 B 31 9751.2 223.56 9762.01 220.2 9775 216.73 9787 215 9828.3 209.04 10498.03 218.97 10538 207 10545.09 204.88 10544.94 \ 200.21 10552 198 10575.66 190.59 10750.28 191.85 10775 190 10788.72 188.97 11008.79 168.34 11021 162 11025.75 159.53 11024.16 155.29 \ 11029 153 11069.61 133.79 11191.57 166.53 11231 145 11240.52 139.8 11236.28 131.46 11245 125 11264.53 110.52 11273.04 112.14 11297 \ 108 11340.07 100.56 11570.05 95.88 11743.44 93.35 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11743.44 95.8 11750.4 93.25 11743.36 90.9 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 11068.5 155.6 0 79 19 -vep_to_table_fields ", label=vep_to_table_fields, lp="11068,157.5", pos="e,11752,93.231 9751.2,223.56 9762,220.2 9775,216.73 9787,215 9828.3,209.04 10498,218.97 10538,207 10545,204.88 10545,200.21 10552,\ 198 10576,190.59 10750,191.85 10775,190 10789,188.97 11009,168.34 11021,162 11026,159.53 11024,155.29 11029,153 11070,133.79 11192,\ 166.53 11231,145 11241,139.8 11236,131.46 11245,125 11265,110.52 11273,112.14 11297,108 11340,100.56 11570,95.876 11743,93.353"]; pindel_insert_size -> somatic [_draw_="c 7 -#000000 B 13 5502.6 223.53 5492.68 220.3 5480.91 216.93 5470 215 5454.33 212.22 5337.93 218.56 5327 207 5324.25 204.09 5324.2 \ 200.86 5327 198 5337.46 187.3 5723.95 183.17 5934.48 181.72 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5934.33 184.17 5941.31 181.67 5934.3 179.27 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5363.5 200.6 0 73 18 -pindel_insert_size ", label=pindel_insert_size, lp="5363.5,202.5", pos="e,5942.8,181.66 5502.6,223.53 5492.7,220.3 5480.9,216.93 5470,215 5454.3,212.22 5337.9,218.56 5327,207 5324.3,204.09 5324.2,200.86 \ 5327,198 5337.5,187.3 5723.9,183.17 5934.5,181.72"]; variants_to_table_genotype_fields -> somatic [_draw_="c 7 -#000000 B 10 9934.55 223.52 9952.65 219.54 9969.52 214.09 9975 207 9977.45 203.84 9977.82 200.83 9975 198 9957.99 180.91 6885.15 \ 180.77 6201.67 180.95 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6201.76 178.5 6194.76 180.95 6201.76 183.4 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 10045.5 200.6 0 139 33 -variants_to_table_genotype_fields ", label=variants_to_table_genotype_fields, lp="10046,202.5", pos="e,6193.2,180.95 9934.5,223.52 9952.7,219.54 9969.5,214.09 9975,207 9977.4,203.84 9977.8,200.83 9975,198 9958,180.91 6885.2,180.77 \ 6201.7,180.95"]; variants_to_table_genotype_fields -> pvacseq [_draw_="c 7 -#000000 B 34 9918.5 223.52 9935.76 220.21 9956.3 216.77 9975 215 10006.75 211.99 10518.46 216.2 10549 207 10556.08 204.87 10555.92 \ 200.15 10563 198 10606.48 184.77 10927.09 197.01 10972 190 11002.7 185.21 11008.56 176.23 11039 170 11069.68 163.72 11081.21 176.43 \ 11109 162 11113.75 159.53 11112.19 155.35 11117 153 11142.01 140.79 11215.34 153 11242 145 11259.16 139.85 11260.36 131.65 11277 \ 125 11306.33 113.27 11314.7 112.25 11346 108 11420.04 97.94 11599.95 93.82 11743.04 92.14 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11743.06 94.59 11750.03 92.06 11743 89.69 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 11186.5 155.6 0 139 33 -variants_to_table_genotype_fields ", label=variants_to_table_genotype_fields, lp="11186,157.5", pos="e,11752,92.042 9918.5,223.52 9935.8,220.21 9956.3,216.77 9975,215 10007,211.99 10518,216.2 10549,207 10556,204.87 10556,200.15 10563,\ 198 10606,184.77 10927,197.01 10972,190 11003,185.21 11009,176.23 11039,170 11070,163.72 11081,176.43 11109,162 11114,159.53 11112,\ 155.35 11117,153 11142,140.79 11215,153 11242,145 11259,139.85 11260,131.65 11277,125 11306,113.27 11315,112.25 11346,108 11420,\ 97.942 11600,93.821 11743,92.14"]; bait_intervals -> germline [_draw_="c 7 -#000000 B 13 7655.39 223.59 7663.65 220.24 7673.63 216.76 7683 215 7707.79 210.34 8114.08 217.54 8137 207 8141.86 204.76 8140.13 \ 200.21 8145 198 8186.28 179.26 9466.6 179.62 9978 180.52 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9977.7 182.97 9984.7 180.53 9977.7 178.07 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8172.5 200.6 0 55 14 -bait_intervals ", label=bait_intervals, lp="8172.5,202.5", pos="e,9986.2,180.53 7655.4,223.59 7663.7,220.24 7673.6,216.76 7683,215 7707.8,210.34 8114.1,217.54 8137,207 8141.9,204.76 8140.1,200.21 \ 8145,198 8186.3,179.26 9466.6,179.62 9978,180.52"]; bait_intervals -> somatic [_draw_="c 7 -#000000 B 13 7619.03 223.56 7610.95 220.2 7601.19 216.73 7592 215 7554.44 207.92 6940.19 219.3 6904 207 6897.69 204.86 6898.3 \ 200.17 6892 198 6860.06 186.98 6426.53 182.97 6201.52 181.62 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6201.8 179.17 6194.78 181.58 6201.77 184.07 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 6931.5 200.6 0 55 14 -bait_intervals ", label=bait_intervals, lp="6931.5,202.5", pos="e,6193.3,181.57 7619,223.56 7611,220.2 7601.2,216.73 7592,215 7554.4,207.92 6940.2,219.3 6904,207 6897.7,204.86 6898.3,200.17 6892,\ 198 6860.1,186.98 6426.5,182.97 6201.5,181.62"]; tdna_cov -> pvacseq [_draw_="c 7 -#000000 B 7 11928.14 223.57 11963.32 206.18 12040.67 167.51 12044 162 12061.3 133.34 12019.9 113.22 11984.98 101.89 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11986.05 99.66 11978.64 99.92 11984.6 104.34 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 12065.5 155.6 0 37 8 -tdna_cov ", label=tdna_cov, lp="12066,157.5", pos="e,11977,99.473 11928,223.57 11963,206.18 12041,167.51 12044,162 12061,133.34 12020,113.22 11985,101.89"]; panel_of_normals_vcf -> somatic [_draw_="c 7 -#000000 B 10 5616.32 223.52 5604.61 220.28 5590.75 216.92 5578 215 5539.8 209.26 5378.04 225.66 5405 198 5414.11 188.65 5743.31 \ 184.01 5934.32 182.11 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5934.26 184.56 5941.23 182.04 5934.21 179.66 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5449 200.6 0 88 20 -panel_of_normals_vcf ", label=panel_of_normals_vcf, lp="5449,202.5", pos="e,5942.7,182.02 5616.3,223.52 5604.6,220.28 5590.8,216.92 5578,215 5539.8,209.26 5378,225.66 5405,198 5414.1,188.65 5743.3,184.01 \ 5934.3,182.11"]; fasta_size -> pvacseq [_draw_="c 7 -#000000 B 7 11996.98 223.56 12029.84 207.54 12095.34 172.59 12085 153 12070.48 125.49 12040.1 110.19 12011.16 101.67 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 12011.91 99.34 12004.51 99.84 12010.61 104.06 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 12107 155.6 0 42 10 -fasta_size ", label=fasta_size, lp="12107,157.5", pos="e,12003,99.444 11997,223.56 12030,207.54 12095,172.59 12085,153 12070,125.49 12040,110.19 12011,101.67"]; interval_list -> somatic [_draw_="c 7 -#000000 B 13 5730.68 223.67 5723.33 220.33 5714.43 216.85 5706 215 5694.65 212.51 5505.06 215.37 5497 207 5494.23 204.12 5494.21 \ 200.87 5497 198 5512.03 182.52 5770.6 180.23 5934.58 180.35 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5934.28 182.8 5941.28 180.36 5934.29 177.9 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5520.5 200.6 0 47 13 -interval_list ", label=interval_list, lp="5520.5,202.5", pos="e,5942.8,180.36 5730.7,223.67 5723.3,220.33 5714.4,216.85 5706,215 5694.6,212.51 5505.1,215.37 5497,207 5494.2,204.12 5494.2,200.87 \ 5497,198 5512,182.52 5770.6,180.23 5934.6,180.35"]; per_base_intervals -> germline [_draw_="c 7 -#000000 B 13 7761.08 223.52 7771.65 220.2 7784.3 216.77 7796 215 7818.25 211.63 8180.56 216.42 8201 207 8205.86 204.76 8204.13 \ 200.21 8209 198 8248.8 179.92 9478.03 179.85 9977.79 180.58 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9977.67 183.03 9984.67 180.59 9977.68 178.13 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8247.5 200.6 0 77 18 -per_base_intervals ", label=per_base_intervals, lp="8247.5,202.5", pos="e,9986.2,180.59 7761.1,223.52 7771.7,220.2 7784.3,216.77 7796,215 7818.3,211.63 8180.6,216.42 8201,207 8205.9,204.76 8204.1,200.21 \ 8209,198 8248.8,179.92 9478,179.85 9977.8,180.58"]; per_base_intervals -> somatic [_draw_="c 7 -#000000 B 13 7713.62 223.56 7703.18 220.21 7690.62 216.74 7679 215 7639.93 209.17 7005.4 219.7 6968 207 6961.69 204.86 6962.3 \ 200.17 6956 198 6921.08 185.99 6440.99 182.43 6201.67 181.41 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6201.79 178.96 6194.78 181.38 6201.77 183.86 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 7006.5 200.6 0 77 18 -per_base_intervals ", label=per_base_intervals, lp="7006.5,202.5", pos="e,6193.3,181.37 7713.6,223.56 7703.2,220.21 7690.6,216.74 7679,215 7639.9,209.17 7005.4,219.7 6968,207 6961.7,204.86 6962.3,200.17 \ 6956,198 6921.1,185.99 6441,182.43 6201.7,181.41"]; reference -> germline [_draw_="c 7 -#000000 B 10 10533.61 223.65 10539.98 220.39 10547.66 216.98 10555 215 10596 203.96 10678.46 228.57 10649 198 10639.63 188.28 \ 10512.69 184.08 10394.1 182.28 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 10394.49 179.84 10387.45 182.18 10394.41 184.74 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 10675 200.6 0 40 9 -reference ", label=reference, lp="10675,202.5", pos="e,10386,182.16 10534,223.65 10540,220.39 10548,216.98 10555,215 10596,203.96 10678,228.57 10649,198 10640,188.28 10513,184.08 10394,\ 182.28"]; phase_vcf [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 10570 125.5 10570 144.5 10638 144.5 10638 125.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 10604 132.5 0 52 9 -phase VCF ", fillcolor="#F3CEA1", height=0.27778, label="phase VCF", pos="10604,135", rects="10570,125.5,10638,144.5", width=0.94444]; reference -> phase_vcf [_draw_="c 7 -#000000 B 16 10533.58 223.55 10539.95 220.28 10547.63 216.87 10555 215 10570.21 211.13 10685.22 218.41 10696 207 10714.82 187.08 \ 10686.12 205.45 10663 190 10646.07 178.69 10651.38 166.34 10636 153 10634.22 151.45 10632.27 150 10630.25 148.63 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 10631.74 146.68 10624.48 145.16 10629.21 150.87 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 10683 178.1 0 40 9 -reference ", label=reference, lp="10683,180", pos="e,10623,144.38 10534,223.55 10540,220.28 10548,216.87 10555,215 10570,211.13 10685,218.41 10696,207 10715,187.08 10686,205.45 10663,\ 190 10646,178.69 10651,166.34 10636,153 10634,151.45 10632,150 10630,148.63"]; reference -> somatic [_draw_="c 7 -#000000 B 13 10505.22 223.6 10498.97 220.26 10491.35 216.78 10484 215 10409.04 196.85 10212.37 223.38 10137 207 10127.08 204.84 \ 10125.94 200.06 10116 198 10018.07 177.68 6891.67 180.06 6201.81 180.83 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6201.83 178.38 6194.83 180.84 6201.83 183.28 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 10157 200.6 0 40 9 -reference ", label=reference, lp="10157,202.5", pos="e,6193.3,180.84 10505,223.6 10499,220.26 10491,216.78 10484,215 10409,196.85 10212,223.38 10137,207 10127,204.84 10126,200.06 10116,\ 198 10018,177.68 6891.7,180.06 6201.8,180.83"]; reference -> pvacseq [_draw_="c 7 -#000000 B 19 10533.58 223.53 10539.94 220.26 10547.63 216.86 10555 215 10558.24 214.18 11032.67 190.3 11036 190 11134.62 181.2 \ 11169.41 208.17 11257 162 11261.73 159.5 11260.52 155.93 11265 153 11340.15 103.82 11372.58 116.4 11462 108 11554.18 99.34 11656.67 \ 94.99 11743.28 92.85 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11743.16 95.3 11750.1 92.68 11743.04 90.4 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 11297.5 155.6 0 65 15 -reference_fasta ", label=reference_fasta, lp="11298,157.5", pos="e,11752,92.646 10534,223.53 10540,220.26 10548,216.86 10555,215 10558,214.18 11033,190.3 11036,190 11135,181.2 11169,208.17 11257,\ 162 11262,159.5 11261,155.93 11265,153 11340,103.82 11373,116.4 11462,108 11554,99.342 11657,94.994 11743,92.847"]; vep_pick -> somatic [_draw_="c 7 -#000000 B 13 5804.63 223.64 5798.57 220.3 5791.16 216.82 5784 215 5771.29 211.77 5557.12 216.43 5548 207 5545.22 204.12 5545.22 \ 200.87 5548 198 5561.3 184.25 5784.75 181.26 5934.37 180.8 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5934.26 183.25 5941.26 180.78 5934.25 178.35 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5566 200.6 0 36 8 -vep_pick ", label=vep_pick, lp="5566,202.5", pos="e,5942.8,180.78 5804.6,223.64 5798.6,220.3 5791.2,216.82 5784,215 5771.3,211.77 5557.1,216.43 5548,207 5545.2,204.12 5545.2,200.87 \ 5548,198 5561.3,184.25 5784.8,181.26 5934.4,180.8"]; trimming_adapters -> rnaseq [_draw_="c 7 -#000000 B 7 4167.58 223.64 4143.95 215.3 4105.44 203.02 4071 198 3964.43 182.47 3282.29 180.73 2962.74 180.79 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2962.83 178.34 2955.83 180.79 2962.83 183.24 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4148.5 200.6 0 77 17 -trimming_adapters ", label=trimming_adapters, lp="4148.5,202.5", pos="e,2954.3,180.79 4167.6,223.64 4143.9,215.3 4105.4,203.02 4071,198 3964.4,182.47 3282.3,180.73 2962.7,180.79"]; refFlat -> rnaseq [_draw_="c 7 -#000000 B 10 2447.59 223.56 2452.54 220.53 2458.38 217.29 2464 215 2492.84 203.23 2501.22 202.79 2532 198 2564.7 192.91 2599.89 \ 189.34 2633.63 186.83 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2633.39 189.31 2640.2 186.36 2633.04 184.42 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2545.5 200.6 0 27 7 -refFlat ", label=refFlat, lp="2545.5,202.5", pos="e,2641.7,186.25 2447.6,223.56 2452.5,220.53 2458.4,217.29 2464,215 2492.8,203.23 2501.2,202.79 2532,198 2564.7,192.91 2599.9,189.34 \ 2633.6,186.83"]; reference_dict -> phase_vcf [_draw_="c 7 -#000000 B 22 10617.31 223.64 10625.67 220.39 10635.66 216.97 10645 215 10657.53 212.35 10751.26 216.37 10760 207 10762.73 204.08 \ 10762.57 201.07 10760 198 10746.95 182.43 10731.51 201.84 10715 190 10706.75 184.09 10711.39 176.95 10704 170 10697.55 163.94 10676.31 \ 156.04 10668 153 10663.53 151.37 10655.26 149.01 10646.12 146.58 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 10646.79 144.22 10639.4 144.81 10645.55 148.96 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 10744.5 178.1 0 59 14 -reference_dict ", label=reference_dict, lp="10744,180", pos="e,10638,144.43 10617,223.64 10626,220.39 10636,216.97 10645,215 10658,212.35 10751,216.37 10760,207 10763,204.08 10763,201.07 10760,\ 198 10747,182.43 10732,201.84 10715,190 10707,184.09 10711,176.95 10704,170 10698,163.94 10676,156.04 10668,153 10664,151.37 10655,\ 149.01 10646,146.58"]; tumor_bams -> somatic [_draw_="c 7 -#000000 B 7 4302.96 223.64 4318.79 215.29 4344.8 203 4369 198 4445.08 182.28 5546.79 180.92 5934.35 180.93 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5934.3 183.38 5941.3 180.93 5934.3 178.48 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4394.5 200.6 0 51 10 -tumor_bams ", label=tumor_bams, lp="4394.5,202.5", pos="e,5942.8,180.93 4303,223.64 4318.8,215.29 4344.8,203 4369,198 4445.1,182.28 5546.8,180.92 5934.4,180.93"]; synonyms_file -> germline [_draw_="c 7 -#000000 B 13 7858.23 223.6 7866.85 220.25 7877.26 216.77 7887 215 7908.87 211.02 8266.82 216.31 8287 207 8291.86 204.76 8290.13 \ 200.21 8295 198 8332.83 180.81 9493.95 180.18 9977.67 180.66 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9977.63 183.11 9984.64 180.67 9977.64 178.21 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8324 200.6 0 58 13 -synonyms_file ", label=synonyms_file, lp="8324,202.5", pos="e,9986.1,180.67 7858.2,223.6 7866.9,220.25 7877.3,216.77 7887,215 7908.9,211.02 8266.8,216.31 8287,207 8291.9,204.76 8290.1,200.21 \ 8295,198 8332.8,180.81 9494,180.18 9977.7,180.66"]; synonyms_file -> somatic [_draw_="c 7 -#000000 B 13 7820.19 223.56 7811.75 220.2 7801.56 216.73 7792 215 7751.65 207.7 7092.83 220.18 7054 207 7047.69 204.86 7048.31 \ 200.16 7042 198 7003.03 184.63 6458.94 181.76 6201.37 181.16 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6201.6 178.71 6194.59 181.14 6201.59 183.61 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 7083 200.6 0 58 13 -synonyms_file ", label=synonyms_file, lp="7083,202.5", pos="e,6193.1,181.14 7820.2,223.56 7811.8,220.2 7801.6,216.73 7792,215 7751.7,207.7 7092.8,220.18 7054,207 7047.7,204.86 7048.3,200.16 \ 7042,198 7003,184.63 6458.9,181.76 6201.4,181.16"]; readcount_minimum_base_quality -> pvacseq [_draw_="c 7 -#000000 B 7 12115.09 223.53 12125.19 208.36 12142.98 175.96 12129 153 12112.67 126.18 12083.96 110.63 12053.91 101.72 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 12054.68 99.4 12047.28 99.89 12053.38 104.12 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 12201.5 155.6 0 139 30 -readcount_minimum_base_quality ", label=readcount_minimum_base_quality, lp="12202,157.5", pos="e,12046,99.491 12115,223.53 12125,208.36 12143,175.96 12129,153 12113,126.18 12084,110.63 12054,101.72"]; gatk_haplotypecaller_intervals -> germline [_draw_="c 7 -#000000 B 10 10096.06 223.53 10111.69 220.3 10130.15 216.93 10147 215 10158.82 213.65 10352.75 215.57 10361 207 10367.62 200.12 \ 10360.71 195.05 10346.45 191.32 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 10347.19 188.98 10339.83 189.82 10346.11 193.76 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 10381 200.6 0 36 9 -intervals ", label=intervals, lp="10381,202.5", pos="e,10338,189.49 10096,223.53 10112,220.3 10130,216.93 10147,215 10159,213.65 10353,215.57 10361,207 10368,200.12 10361,195.05 10346,\ 191.32"]; allele_specific_binding_thresholds -> pvacseq [_draw_="c 7 -#000000 B 7 12296.9 223.69 12296.25 207.58 12292.42 172.03 12272 153 12241.99 125.03 12145.05 109.06 12064.12 100.35 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 12064.56 97.93 12057.34 99.64 12064.05 102.81 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 12349 155.6 0 140 34 -allele_specific_binding_thresholds ", label=allele_specific_binding_thresholds, lp="12349,157.5", pos="e,12056,99.48 12297,223.69 12296,207.58 12292,172.03 12272,153 12242,125.03 12145,109.06 12064,100.35"]; docm_vcf -> somatic [_draw_="c 7 -#000000 B 10 4379.24 223.63 4385.34 220.68 4392.4 217.47 4399 215 4424.95 205.27 4431.57 201.96 4459 198 4531.35 187.56 5561.31 \ 182.83 5934.34 181.45 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5934.26 183.9 5941.25 181.42 5934.24 179 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4478.5 200.6 0 39 8 -docm_vcf ", label=docm_vcf, lp="4478.5,202.5", pos="e,5942.8,181.42 4379.2,223.63 4385.3,220.68 4392.4,217.47 4399,215 4425,205.27 4431.6,201.96 4459,198 4531.4,187.56 5561.3,182.83 \ 5934.3,181.45"]; net_chop_method -> pvacseq [_draw_="c 7 -#000000 B 7 12445.02 223.57 12444.56 207.24 12441.06 171.31 12420 153 12378.61 117.02 12254.14 101.64 12142.73 95.19 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 12143.03 92.75 12135.9 94.81 12142.76 97.65 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 12463.5 155.6 0 73 15 -net_chop_method ", label=net_chop_method, lp="12464,157.5", pos="e,12134,94.724 12445,223.57 12445,207.24 12441,171.31 12420,153 12379,117.02 12254,101.64 12143,95.191"]; normal_name -> somatic [_draw_="c 7 -#000000 B 7 4457.34 223.64 4474.63 215.29 4502.94 203.01 4529 198 4597.28 184.88 5572.19 181.86 5934.07 181.18 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5934 183.63 5940.99 181.17 5933.99 178.73 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4557 200.6 0 56 11 -normal_name ", label=normal_name, lp="4557,202.5", pos="e,5942.5,181.17 4457.3,223.64 4474.6,215.29 4502.9,203.01 4529,198 4597.3,184.88 5572.2,181.86 5934.1,181.18"]; target_intervals -> germline [_draw_="c 7 -#000000 B 13 7954.48 223.61 7963.65 220.26 7974.7 216.79 7985 215 8005.2 211.5 8335.39 215.6 8354 207 8358.86 204.75 8357.13 \ 200.22 8362 198 8398.31 181.49 9507.5 180.44 9978.13 180.74 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9977.87 183.19 9984.87 180.74 9977.87 178.29 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8394 200.6 0 64 16 -target_intervals ", label=target_intervals, lp="8394,202.5", pos="e,9986.4,180.74 7954.5,223.61 7963.7,220.26 7974.7,216.79 7985,215 8005.2,211.5 8335.4,215.6 8354,207 8358.9,204.75 8357.1,200.22 \ 8362,198 8398.3,181.49 9507.5,180.44 9978.1,180.74"]; target_intervals -> somatic [_draw_="c 7 -#000000 B 13 7913.53 223.56 7904.36 220.2 7893.31 216.73 7883 215 7841.25 208 7161.09 220.6 7121 207 7114.69 204.86 7115.31 \ 200.16 7109 198 7066.89 183.58 6473 181.29 6201.6 180.99 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6201.78 178.55 6194.78 180.99 6201.78 183.45 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 7153 200.6 0 64 16 -target_intervals ", label=target_intervals, lp="7153,202.5", pos="e,6193.3,180.99 7913.5,223.56 7904.4,220.2 7893.3,216.73 7883,215 7841.2,208 7161.1,220.6 7121,207 7114.7,204.86 7115.3,200.16 7109,\ 198 7066.9,183.58 6473,181.29 6201.6,180.99"]; summary_intervals -> germline [_draw_="c 7 -#000000 B 13 8065.51 223.55 8076.26 220.23 8089.12 216.8 8101 215 8136.82 209.57 8394.13 222.25 8427 207 8431.85 204.75 8430.13 \ 200.22 8435 198 8469.63 182.25 9521.04 180.74 9977.68 180.83 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9977.51 183.28 9984.52 180.83 9977.52 178.38 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8473.5 200.6 0 77 17 -summary_intervals ", label=summary_intervals, lp="8473.5,202.5", pos="e,9986,180.83 8065.5,223.55 8076.3,220.23 8089.1,216.8 8101,215 8136.8,209.57 8394.1,222.25 8427,207 8431.9,204.75 8430.1,200.22 \ 8435,198 8469.6,182.25 9521,180.74 9977.7,180.83"]; summary_intervals -> somatic [_draw_="c 7 -#000000 B 13 8017.21 223.56 8006.58 220.2 7993.81 216.73 7982 215 7938.68 208.66 7235.46 221.06 7194 207 7187.69 204.86 7188.31 \ 200.16 7182 198 7136.44 182.42 6487.53 180.79 6201.62 180.84 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6201.79 178.39 6194.79 180.84 6201.79 183.29 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 7232.5 200.6 0 77 17 -summary_intervals ", label=summary_intervals, lp="7232.5,202.5", pos="e,6193.3,180.84 8017.2,223.56 8006.6,220.2 7993.8,216.73 7982,215 7938.7,208.66 7235.5,221.06 7194,207 7187.7,204.86 7188.3,200.16 \ 7182,198 7136.4,182.42 6487.5,180.79 6201.6,180.84"]; qc_minimum_mapping_quality -> germline [_draw_="c 7 -#000000 B 13 8220.62 223.59 8236.35 220.32 8254.99 216.91 8272 215 8298.62 212.01 8488.74 218.38 8513 207 8517.85 204.73 8516.13 \ 200.22 8521 198 8553.67 183.13 9538.38 181.1 9977.8 180.94 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9977.64 183.39 9984.64 180.94 9977.64 178.49 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8582.5 200.6 0 123 26 -qc_minimum_mapping_quality ", label=qc_minimum_mapping_quality, lp="8582.5,202.5", pos="e,9986.2,180.94 8220.6,223.59 8236.4,220.32 8255,216.91 8272,215 8298.6,212.01 8488.7,218.38 8513,207 8517.8,204.73 8516.1,200.22 \ 8521,198 8553.7,183.13 9538.4,181.1 9977.8,180.94"]; qc_minimum_mapping_quality -> somatic [_draw_="c 7 -#000000 B 13 8148.66 223.57 8132.94 220.22 8114.15 216.74 8097 215 8051.84 210.41 7322.99 221.56 7280 207 7273.69 204.86 7274.31 \ 200.15 7268 198 7218.37 181.06 6504.37 180.25 6201.86 180.68 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6201.98 178.23 6194.99 180.69 6201.99 183.13 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 7341.5 200.6 0 123 26 -qc_minimum_mapping_quality ", label=qc_minimum_mapping_quality, lp="7341.5,202.5", pos="e,6193.5,180.69 8148.7,223.57 8132.9,220.22 8114.1,216.74 8097,215 8051.8,210.41 7323,221.56 7280,207 7273.7,204.86 7274.3,200.15 \ 7268,198 7218.4,181.06 6504.4,180.25 6201.9,180.68"]; readcount_minimum_mapping_quality -> pvacseq [_draw_="c 7 -#000000 B 13 12595.73 223.68 12579.23 207.55 12540.39 171.96 12501 153 12454.38 130.56 12438.42 136.6 12388 125 12352.58 116.85 \ 12344.05 112.64 12308 108 12254.59 101.13 12196.46 96.94 12142.62 94.42 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 12142.98 91.98 12135.88 94.11 12142.76 96.88 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 12594.5 155.6 0 155 33 -readcount_minimum_mapping_quality ", label=readcount_minimum_mapping_quality, lp="12594,157.5", pos="e,12134,94.045 12596,223.68 12579,207.55 12540,171.96 12501,153 12454,130.56 12438,136.6 12388,125 12353,116.85 12344,112.64 12308,\ 108 12255,101.13 12196,96.944 12143,94.421"]; prediction_algorithms -> pvacseq [_draw_="c 7 -#000000 B 7 12764.53 223.55 12749.24 206.85 12712.44 169.81 12673 153 12580.81 113.7 12325.53 99.29 12142.86 94.02 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 12143.07 91.58 12136 93.83 12142.93 96.47 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 12734.5 155.6 0 89 21 -prediction_algorithms ", label=prediction_algorithms, lp="12734,157.5", pos="e,12134,93.785 12765,223.55 12749,206.85 12712,169.81 12673,153 12581,113.7 12326,99.294 12143,94.021"]; varscan_min_coverage -> somatic [_draw_="c 7 -#000000 B 7 4561.53 223.67 4571.73 215.34 4588.79 203.08 4606 198 4668.96 179.43 5584.96 179.77 5934.15 180.59 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5934.02 183.04 5941.03 180.6 5934.03 178.14 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4653 200.6 0 94 20 -varscan_min_coverage ", label=varscan_min_coverage, lp="4653,202.5", pos="e,5942.5,180.61 4561.5,223.67 4571.7,215.34 4588.8,203.08 4606,198 4669,179.43 5585,179.77 5934.1,180.59"]; netmhc_stab -> pvacseq [_draw_="c 7 -#000000 B 13 12870.58 223.65 12855.39 207.14 12818.89 170.43 12780 153 12710.52 121.86 12686.41 135.46 12611 125 12543.67 115.66 \ 12526.8 112.9 12459 108 12354.76 100.47 12238.43 96.27 12142.65 93.93 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 12142.9 91.49 12135.84 93.77 12142.78 96.38 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 12822.5 155.6 0 53 11 -netmhc_stab ", label=netmhc_stab, lp="12822,157.5", pos="e,12134,93.73 12871,223.65 12855,207.14 12819,170.43 12780,153 12711,121.86 12686,135.46 12611,125 12544,115.66 12527,112.9 12459,\ 108 12355,100.47 12238,96.268 12143,93.93"]; known_indels -> germline [_draw_="c 7 -#000000 B 13 8331.4 223.63 8339.66 220.29 8349.64 216.81 8359 215 8390.21 208.97 8616.18 220.43 8645 207 8649.85 204.74 8648.13 \ 200.22 8653 198 8682.67 184.48 9565.76 181.7 9977.89 181.14 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9977.83 183.59 9984.82 181.13 9977.82 178.69 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8681 200.6 0 56 12 -known_indels ", label=known_indels, lp="8681,202.5", pos="e,9986.3,181.12 8331.4,223.63 8339.7,220.29 8349.6,216.81 8359,215 8390.2,208.97 8616.2,220.43 8645,207 8649.9,204.74 8648.1,200.22 \ 8653,198 8682.7,184.48 9565.8,181.7 9977.9,181.14"]; known_indels -> somatic [_draw_="c 7 -#000000 B 13 8295.03 223.55 8286.96 220.19 8277.19 216.72 8268 215 8221.26 206.24 7457.05 222.25 7412 207 7405.69 204.86 7406.31 \ 200.15 7400 198 7344.04 178.95 6527.69 179.49 6201.35 180.47 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6201.77 178.02 6194.77 180.49 6201.78 182.92 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 7440 200.6 0 56 12 -known_indels ", label=known_indels, lp="7440,202.5", pos="e,6193.3,180.5 8295,223.55 8287,220.19 8277.2,216.72 8268,215 8221.3,206.24 7457,222.25 7412,207 7405.7,204.86 7406.3,200.15 7400,\ 198 7344,178.95 6527.7,179.49 6201.4,180.47"]; trimming_min_readlength -> rnaseq [_draw_="c 7 -#000000 B 7 2541.97 223.58 2549.26 215.44 2561.51 203.55 2575 198 2587.19 192.98 2608.6 189.43 2633.49 186.92 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2633.44 189.39 2640.18 186.29 2632.97 184.51 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2627 200.6 0 104 23 -trimming_min_readlength ", label=trimming_min_readlength, lp="2627,202.5", pos="e,2641.7,186.14 2542,223.58 2549.3,215.44 2561.5,203.55 2575,198 2587.2,192.98 2608.6,189.43 2633.5,186.92"]; kallisto_index -> rnaseq [_draw_="c 7 -#000000 B 7 2660.58 223.53 2668.2 215.59 2680.7 204.05 2694 198 2699.32 195.58 2704.94 193.49 2710.69 191.7 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2711.09 194.14 2717.15 189.86 2709.74 189.43 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2721.5 200.6 0 55 14 -kallisto_index ", label=kallisto_index, lp="2721.5,202.5", pos="e,2718.6,189.44 2660.6,223.53 2668.2,215.59 2680.7,204.05 2694,198 2699.3,195.58 2704.9,193.49 2710.7,191.7"]; mutect_max_alt_alleles_in_normal_count -> somatic [_draw_="c 7 -#000000 B 7 4717.27 223.76 4706.98 216.61 4695.95 206.15 4704 198 4714.72 187.14 5592.68 182.75 5934.2 181.45 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5934.16 183.9 5941.15 181.42 5934.14 179 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4787 200.6 0 166 38 -mutect_max_alt_alleles_in_normal_count ", label=mutect_max_alt_alleles_in_normal_count, lp="4787,202.5", pos="e,5942.7,181.42 4717.3,223.76 4707,216.61 4695.9,206.15 4704,198 4714.7,187.14 5592.7,182.75 5934.2,181.45"]; mills -> germline [_draw_="c 7 -#000000 B 13 8388.52 223.63 8392.92 220.28 8398.4 216.8 8404 215 8436.37 204.57 8679.16 221.34 8710 207 8714.85 204.74 8713.13 \ 200.22 8718 198 8746.2 185.14 9579.37 182.01 9977.73 181.25 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9977.68 183.7 9984.67 181.23 9977.67 178.8 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8727.5 200.6 0 19 5 -mills ", label=mills, lp="8727.5,202.5", pos="e,9986.2,181.23 8388.5,223.63 8392.9,220.28 8398.4,216.8 8404,215 8436.4,204.57 8679.2,221.34 8710,207 8714.9,204.74 8713.1,200.22 \ 8718,198 8746.2,185.14 9579.4,182.01 9977.7,181.25"]; mills -> somatic [_draw_="c 7 -#000000 B 13 8369.93 223.58 8365.72 220.23 8360.44 216.76 8355 215 8308.59 199.99 7523.21 222.64 7477 207 7470.69 204.86 7471.31 \ 200.15 7465 198 7435.38 187.93 6545.54 183.05 6201.74 181.53 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6201.99 179.08 6194.98 181.5 6201.97 183.98 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 7486.5 200.6 0 19 5 -mills ", label=mills, lp="7486.5,202.5", pos="e,6193.5,181.5 8369.9,223.58 8365.7,220.23 8360.4,216.76 8355,215 8308.6,199.99 7523.2,222.64 7477,207 7470.7,204.86 7471.3,200.15 \ 7465,198 7435.4,187.93 6545.5,183.05 6201.7,181.53"]; exclude_nas -> pvacseq [_draw_="c 7 -#000000 B 10 12952.35 223.71 12934.69 207.3 12892.57 170.76 12850 153 12782.97 125.03 12760.99 134.64 12689 125 12505.03 100.35 \ 12293.51 92.64 12142.79 90.63 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 12142.86 88.18 12135.82 90.54 12142.79 93.08 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 12892.5 155.6 0 51 11 -exclude_nas ", label=exclude_nas, lp="12892,157.5", pos="e,12134,90.521 12952,223.71 12935,207.3 12893,170.76 12850,153 12783,125.03 12761,134.64 12689,125 12505,100.35 12294,92.64 12143,\ 90.629"]; varscan_min_var_freq -> somatic [_draw_="c 7 -#000000 B 7 4890.32 223.65 4878.05 216.79 4865.33 206.8 4874 198 4892.39 179.34 5626.66 179.55 5934.43 180.46 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5934 182.91 5941 180.48 5934.01 178.01 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4918 200.6 0 88 20 -varscan_min_var_freq ", label=varscan_min_var_freq, lp="4918,202.5", pos="e,5942.5,180.49 4890.3,223.65 4878,216.79 4865.3,206.8 4874,198 4892.4,179.34 5626.7,179.55 5934.4,180.46"]; mutect_artifact_detection_mode -> somatic [_draw_="c 7 -#000000 B 13 5219.03 223.51 5203.6 220.6 5186.05 217.47 5170 215 5155.62 212.79 5114.64 217.9 5105 207 5102.35 204 5102.2 200.85 \ 5105 198 5119.32 183.43 5673.4 181.2 5934.48 180.96 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5934.36 183.41 5941.36 180.95 5934.36 178.51 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5171 200.6 0 132 30 -mutect_artifact_detection_mode ", label=mutect_artifact_detection_mode, lp="5171,202.5", pos="e,5942.9,180.95 5219,223.51 5203.6,220.6 5186.1,217.47 5170,215 5155.6,212.79 5114.6,217.9 5105,207 5102.3,204 5102.2,200.85 5105,\ 198 5119.3,183.43 5673.4,181.2 5934.5,180.96"]; pvacseq_threads -> pvacseq [_draw_="c 7 -#000000 B 13 13041.87 223.54 13019.75 207.18 12968.13 171.19 12919 153 12852.53 128.39 12832.24 134.53 12762 125 12681.5 114.08 \ 12661.1 112.86 12580 108 12433.72 99.23 12268.26 94.98 12142.65 92.93 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 12142.98 90.48 12135.94 92.82 12142.9 95.38 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 12960.5 155.6 0 41 9 -n_threads ", label=n_threads, lp="12960,157.5", pos="e,12134,92.794 13042,223.54 13020,207.18 12968,171.19 12919,153 12853,128.39 12832,134.53 12762,125 12681,114.08 12661,112.86 12580,\ 108 12434,99.226 12268,94.98 12143,92.926"]; normal_readgroups -> germline [_draw_="c 7 -#000000 B 13 8483.81 223.53 8494.5 220.25 8507.24 216.85 8519 215 8543.05 211.21 8715.97 217.38 8738 207 8742.84 204.72 8741.13 \ 200.22 8746 198 8773.57 185.42 9585.73 182.15 9977.95 181.3 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9977.77 183.75 9984.76 181.28 9977.76 178.85 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8770 200.6 0 48 10 -readgroups ", label=readgroups, lp="8770,202.5", pos="e,9986.3,181.28 8483.8,223.53 8494.5,220.25 8507.2,216.85 8519,215 8543.1,211.21 8716,217.38 8738,207 8742.8,204.72 8741.1,200.22 \ 8746,198 8773.6,185.42 9585.7,182.15 9977.9,181.3"]; normal_readgroups -> somatic [_draw_="c 7 -#000000 B 13 8435.21 223.55 8424.58 220.19 8411.81 216.72 8400 215 8350.8 207.83 7552.1 222.93 7505 207 7498.68 204.86 7499.31 \ 200.15 7493 198 7462.7 187.7 6550.19 182.94 6201.59 181.5 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6201.73 179.05 6194.72 181.47 6201.71 183.95 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 7545 200.6 0 80 17 -normal_readgroups ", label=normal_readgroups, lp="7545,202.5", pos="e,6193.2,181.46 8435.2,223.55 8424.6,220.19 8411.8,216.72 8400,215 8350.8,207.83 7552.1,222.93 7505,207 7498.7,204.86 7499.3,200.15 \ 7493,198 7462.7,187.7 6550.2,182.94 6201.6,181.5"]; mutect_max_alt_allele_in_normal_fraction -> somatic [_draw_="c 7 -#000000 B 13 5915.76 223.51 5895.19 220.29 5871 216.94 5849 215 5834.55 213.72 5598.1 217.41 5588 207 5585.22 204.13 5585.22 \ 200.88 5588 198 5599.97 185.6 5796.68 182.13 5934.52 181.22 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5934.19 183.67 5941.17 181.18 5934.16 178.77 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5672.5 200.6 0 169 40 -mutect_max_alt_allele_in_normal_fraction ", label=mutect_max_alt_allele_in_normal_fraction, lp="5672.5,202.5", pos="e,5942.7,181.17 5915.8,223.51 5895.2,220.29 5871,216.94 5849,215 5834.5,213.72 5598.1,217.41 5588,207 5585.2,204.13 5585.2,200.88 \ 5588,198 5600,185.6 5796.7,182.13 5934.5,181.22"]; vep_assembly -> germline [_draw_="c 7 -#000000 B 13 8581.71 223.53 8590.25 220.25 8600.45 216.85 8610 215 8630.2 211.08 8776.42 215.83 8795 207 8799.83 204.7 8798.13 \ 200.22 8803 198 8829.28 186 9598.17 182.44 9977.89 181.4 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9977.72 183.85 9984.72 181.39 9977.71 178.95 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8832 200.6 0 58 12 -vep_assembly ", label=vep_assembly, lp="8832,202.5", pos="e,9986.2,181.38 8581.7,223.53 8590.2,220.25 8600.5,216.85 8610,215 8630.2,211.08 8776.4,215.83 8795,207 8799.8,204.7 8798.1,200.22 \ 8803,198 8829.3,186 9598.2,182.44 9977.9,181.4"]; vep_assembly -> somatic [_draw_="c 7 -#000000 B 13 8543.2 223.55 8534.76 220.19 8524.56 216.72 8515 215 8464.64 205.95 7642.47 223.39 7594 207 7587.68 204.86 7588.31 \ 200.14 7582 198 7549.57 186.99 6565.83 182.64 6201.76 181.4 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6201.8 178.95 6194.79 181.38 6201.79 183.85 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 7623 200.6 0 58 12 -vep_assembly ", label=vep_assembly, lp="7623,202.5", pos="e,6193.3,181.37 8543.2,223.55 8534.8,220.19 8524.6,216.72 8515,215 8464.6,205.95 7642.5,223.39 7594,207 7587.7,204.86 7588.3,200.14 \ 7582,198 7549.6,186.99 6565.8,182.64 6201.8,181.4"]; ribosomal_intervals -> rnaseq [_draw_="c 7 -#000000 B 7 2752.85 223.69 2750.62 216.29 2748.85 205.51 2754 198 2754.83 196.79 2755.75 195.67 2756.76 194.63 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2758.12 196.68 2762.11 190.43 2755.09 192.83 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2794 200.6 0 80 19 -ribosomal_intervals ", label=ribosomal_intervals, lp="2794,202.5", pos="e,2763.3,189.49 2752.8,223.69 2750.6,216.29 2748.9,205.51 2754,198 2754.8,196.79 2755.8,195.67 2756.8,194.63"]; maximum_transcript_support_level -> pvacseq [_draw_="c 7 -#000000 B 13 13182.02 223.6 13143.8 207.81 13057.4 173.43 12982 153 12916.54 135.26 12899.18 134.25 12832 125 12748.01 113.43 \ 12726.65 112.81 12642 108 12473.86 98.44 12282.67 94.25 12142.79 92.42 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 12143.04 89.97 12136.01 92.33 12142.98 94.87 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 13083 155.6 0 142 32 -maximum_transcript_support_level ", label=maximum_transcript_support_level, lp="13083,157.5", pos="e,12134,92.311 13182,223.6 13144,207.81 13057,173.43 12982,153 12917,135.26 12899,134.25 12832,125 12748,113.43 12727,112.81 12642,\ 108 12474,98.443 12283,94.252 12143,92.418"]; strand -> rnaseq [_draw_="c 7 -#000000 B 7 2840.88 223.61 2841.2 216.16 2840.51 205.35 2835 198 2834.01 196.68 2832.9 195.47 2831.7 194.34 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2833.33 192.5 2826.23 190.34 2830.43 196.46 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2852.5 200.6 0 27 6 -strand ", label=strand, lp="2852.5,202.5", pos="e,2825,189.45 2840.9,223.61 2841.2,216.16 2840.5,205.35 2835,198 2834,196.68 2832.9,195.47 2831.7,194.34"]; trimming_adapter_min_overlap -> rnaseq [_draw_="c 7 -#000000 B 7 2933.8 223.55 2916.55 216.16 2890.4 205.47 2867 198 2859.75 195.69 2851.99 193.5 2844.38 191.51 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2845.07 189.16 2837.69 189.81 2843.87 193.91 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2953 200.6 0 126 28 -trimming_adapter_min_overlap ", label=trimming_adapter_min_overlap, lp="2953,202.5", pos="e,2836.2,189.44 2933.8,223.55 2916.5,216.16 2890.4,205.47 2867,198 2859.7,195.69 2852,193.5 2844.4,191.51"]; expn_val -> pvacseq [_draw_="c 7 -#000000 B 7 13317.45 223.54 13287.93 206.82 13218.44 169.75 13155 153 12969.77 104.08 12436.07 93.38 12142.48 91.28 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 12142.82 88.83 12135.81 91.23 12142.79 93.73 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 13202 155.6 0 36 8 -expn_val ", label=expn_val, lp="13202,157.5", pos="e,12134,91.223 13317,223.54 13288,206.82 13218,169.75 13155,153 12970,104.08 12436,93.378 12142,91.28"]; gene_transcript_lookup_table -> rnaseq [_draw_="c 7 -#000000 B 7 3101.07 223.6 3080.15 215.6 3046.89 203.91 3017 198 2999.56 194.55 2981.21 191.79 2962.87 189.59 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2963.18 187.16 2955.94 188.79 2962.62 192.03 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3112.5 200.6 0 121 28 -gene_transcript_lookup_table ", label=gene_transcript_lookup_table, lp="3112.5,202.5", pos="e,2954.4,188.62 3101.1,223.6 3080.2,215.6 3046.9,203.91 3017,198 2999.6,194.55 2981.2,191.79 2962.9,189.59"]; reference_index -> rnaseq [_draw_="c 7 -#000000 B 7 3238.62 223.5 3222.91 215.3 3197.55 203.35 3174 198 3134.42 189 3044.71 184.73 2962.84 182.72 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2963 180.28 2955.95 182.56 2962.89 185.18 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3234 200.6 0 66 15 -reference_index ", label=reference_index, lp="3234,202.5", pos="e,2954.4,182.52 3238.6,223.5 3222.9,215.3 3197.5,203.35 3174,198 3134.4,189 3044.7,184.73 2962.8,182.72"]; emit_reference_confidence -> germline [_draw_="c 7 -#000000 B 13 10255.42 223.52 10269.21 220.41 10285.28 217.13 10300 215 10311.69 213.31 10397.97 215.66 10406 207 10408.72 204.07 \ 10408.72 200.94 10406 198 10403.41 195.2 10396.29 192.86 10386.13 190.9 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 10386.59 188.5 10379.27 189.74 10385.76 193.33 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 10464 200.6 0 112 25 -emit_reference_confidence ", label=emit_reference_confidence, lp="10464,202.5", pos="e,10378,189.48 10255,223.52 10269,220.41 10285,217.13 10300,215 10312,213.31 10398,215.66 10406,207 10409,204.07 10409,200.94 10406,\ 198 10403,195.2 10396,192.86 10386,190.9"]; bqsr_intervals -> germline [_draw_="c 7 -#000000 B 13 8672.29 223.55 8680.65 220.28 8690.64 216.88 8700 215 8735.34 207.9 8829.49 222.57 8862 207 8866.83 204.69 8865.13 \ 200.22 8870 198 8894.78 186.68 9613.14 182.79 9977.83 181.54 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9977.61 184 9984.6 181.52 9977.59 179.1 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8899 200.6 0 58 14 -bqsr_intervals ", label=bqsr_intervals, lp="8899,202.5", pos="e,9986.1,181.52 8672.3,223.55 8680.6,220.28 8690.6,216.88 8700,215 8735.3,207.9 8829.5,222.57 8862,207 8866.8,204.69 8865.1,200.22 \ 8870,198 8894.8,186.68 9613.1,182.79 9977.8,181.54"]; bqsr_intervals -> somatic [_draw_="c 7 -#000000 B 13 8634.2 223.55 8625.76 220.19 8615.57 216.72 8606 215 8554.33 205.72 7710.74 223.81 7661 207 7654.68 204.87 7655.31 \ 200.14 7649 198 7614.95 186.45 6576.94 182.42 6201.69 181.33 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6201.74 178.88 6194.73 181.31 6201.73 183.78 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 7690 200.6 0 58 14 -bqsr_intervals ", label=bqsr_intervals, lp="7690,202.5", pos="e,6193.2,181.31 8634.2,223.55 8625.8,220.19 8615.6,216.72 8606,215 8554.3,205.72 7710.7,223.81 7661,207 7654.7,204.87 7655.3,200.14 \ 7649,198 7614.9,186.45 6576.9,182.42 6201.7,181.33"]; trimming_max_uncalled -> rnaseq [_draw_="c 7 -#000000 B 7 3352.9 223.64 3332.08 215.43 3298.38 203.36 3268 198 3211.27 187.99 3074.31 183.85 2962.78 182.15 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2963.01 179.7 2955.97 182.05 2962.93 184.6 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3351.5 200.6 0 97 21 -trimming_max_uncalled ", label=trimming_max_uncalled, lp="3351.5,202.5", pos="e,2954.5,182.03 3352.9,223.64 3332.1,215.43 3298.4,203.36 3268,198 3211.3,187.99 3074.3,183.85 2962.8,182.15"]; minimum_fold_change -> pvacseq [_draw_="c 7 -#000000 B 13 13412.3 223.54 13376.1 207.49 13293.61 172.47 13221 153 13147.46 133.28 13127.59 134.12 13052 125 12953.32 113.09 \ 12928.29 112.73 12829 108 12593.39 96.77 12322.21 92.89 12142.57 91.59 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 12142.61 89.14 12135.6 91.54 12142.58 94.04 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 13296 155.6 0 92 19 -minimum_fold_change ", label=minimum_fold_change, lp="13296,157.5", pos="e,12134,91.53 13412,223.54 13376,207.49 13294,172.47 13221,153 13147,133.28 13128,134.12 13052,125 12953,113.09 12928,112.73 12829,\ 108 12593,96.768 12322,92.892 12143,91.59"]; mutect_scatter_count -> somatic [_draw_="c 7 -#000000 B 13 6116.4 223.56 6104.74 220.25 6090.82 216.81 6078 215 6060.56 212.53 5773.3 219.61 5761 207 5758.21 204.14 5758.25 \ 200.91 5761 198 5767.27 191.37 5854.51 186.97 5934.39 184.31 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5934.16 186.77 5941.08 184.09 5934 181.87 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5805 200.6 0 88 20 -mutect_scatter_count ", label=mutect_scatter_count, lp="5805,202.5", pos="e,5942.6,184.04 6116.4,223.56 6104.7,220.25 6090.8,216.81 6078,215 6060.6,212.53 5773.3,219.61 5761,207 5758.2,204.14 5758.3,200.91 \ 5761,198 5767.3,191.37 5854.5,186.97 5934.4,184.31"]; somalier_vcf -> somatic [_draw_="c 7 -#000000 B 10 6230.44 223.61 6222.54 220.26 6213 216.79 6204 215 6185.14 211.26 5871.44 220.75 5858 207 5843.16 191.82 5884.52 \ 185.04 5934.36 182.18 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5934.38 184.63 5941.24 181.82 5934.12 179.74 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5884 200.6 0 52 12 -somalier_vcf ", label=somalier_vcf, lp="5884,202.5", pos="e,5942.7,181.74 6230.4,223.61 6222.5,220.26 6213,216.79 6204,215 6185.1,211.26 5871.4,220.75 5858,207 5843.2,191.82 5884.5,185.04 \ 5934.4,182.18"]; binding_threshold -> pvacseq [_draw_="c 7 -#000000 B 22 10726.58 223.53 10741.8 218.68 10758.33 212.48 10764 207 10769.87 201.32 10769.41 198.02 10771 190 10772.73 181.28 \ 10776.9 176.65 10771 170 10751.09 147.57 10723.91 184.43 10704 162 10701.34 159.01 10701.95 156.43 10704 153 10709.44 143.92 10777.75 \ 110.65 10788 108 10833.24 96.29 11425 92.62 11743.38 91.49 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11743.28 93.94 11750.27 91.47 11743.26 89.04 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 10741 155.6 0 74 17 -binding_threshold ", label=binding_threshold, lp="10741,157.5", pos="e,11752,91.461 10727,223.53 10742,218.68 10758,212.48 10764,207 10770,201.32 10769,198.02 10771,190 10773,181.28 10777,176.65 10771,\ 170 10751,147.57 10724,184.43 10704,162 10701,159.01 10702,156.43 10704,153 10709,143.92 10778,110.65 10788,108 10833,96.291 11425,\ 92.621 11743,91.49"]; manta_non_wgs -> somatic [_draw_="c 7 -#000000 B 13 6318.85 223.52 6309.55 220.2 6298.39 216.77 6288 215 6277.89 213.28 5926.17 214.33 5919 207 5916.2 204.14 5916.34 \ 200.98 5919 198 5921.51 195.18 5930.53 192.77 5942.97 190.73 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5943.08 193.19 5949.64 189.72 5942.35 188.34 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5952.5 200.6 0 67 13 -manta_non_wgs ", label=manta_non_wgs, lp="5952.5,202.5", pos="e,5951.1,189.5 6318.9,223.52 6309.5,220.2 6298.4,216.77 6288,215 6277.9,213.28 5926.2,214.33 5919,207 5916.2,204.14 5916.3,200.98 \ 5919,198 5921.5,195.18 5930.5,192.77 5943,190.73"]; trimming_adapter_trim_end -> rnaseq [_draw_="c 7 -#000000 B 7 3497.93 223.61 3474.04 215.37 3435.46 203.28 3401 198 3319.78 185.55 3111.59 181.97 2962.59 181.07 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2962.73 178.62 2955.72 181.03 2962.7 183.52 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3497 200.6 0 112 25 -trimming_adapter_trim_end ", label=trimming_adapter_trim_end, lp="3497,202.5", pos="e,2954.2,181.02 3497.9,223.61 3474,215.37 3435.5,203.28 3401,198 3319.8,185.55 3111.6,181.97 2962.6,181.07"]; normal_vaf -> pvacseq [_draw_="c 7 -#000000 B 13 10787.9 223.53 10785.51 205.06 10780.05 162.76 10780 162 10779.74 158.01 10779.21 156.92 10780 153 10784.31 131.72 \ 10781 120.13 10799 108 10818.27 95.01 11420.98 91.93 11743.62 91.21 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11743.15 93.66 11750.15 91.2 11743.14 88.76 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 10803 155.6 0 46 10 -normal_vaf ", label=normal_vaf, lp="10803,157.5", pos="e,11752,91.192 10788,223.53 10786,205.06 10780,162.76 10780,162 10780,158.01 10779,156.92 10780,153 10784,131.72 10781,120.13 10799,\ 108 10818,95.012 11421,91.929 11744,91.209"]; trna_vaf -> pvacseq [_draw_="c 7 -#000000 B 13 10857.11 223.76 10854.95 207.78 10847.96 172.43 10827 153 10818.13 144.78 10808.18 154.73 10801 145 10790.95 131.39 \ 10795.57 116.84 10810 108 10829.58 96.01 11423.34 92.47 11743.27 91.43 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11743.21 93.88 11750.21 91.4 11743.2 88.98 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 10851 155.6 0 34 8 -trna_vaf ", label=trna_vaf, lp="10851,157.5", pos="e,11752,91.4 10857,223.76 10855,207.78 10848,172.43 10827,153 10818,144.78 10808,154.73 10801,145 10791,131.39 10796,116.84 10810,\ 108 10830,96.011 11423,92.467 11743,91.427"]; tumor_name -> somatic [_draw_="c 7 -#000000 B 7 4987.7 223.57 4972.09 217.27 4957.11 208.05 4967 198 4983.74 181 5644.46 180.18 5934.18 180.64 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5934.12 183.09 5941.13 180.65 5934.13 178.19 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4993 200.6 0 52 10 -tumor_name ", label=tumor_name, lp="4993,202.5", pos="e,5942.6,180.65 4987.7,223.57 4972.1,217.27 4957.1,208.05 4967,198 4983.7,181 5644.5,180.18 5934.2,180.64"]; tdna_vaf -> pvacseq [_draw_="c 7 -#000000 B 13 10917.39 223.57 10911.74 206.93 10896.71 169.98 10870 153 10858.09 145.43 10816.33 155.59 10807 145 10794.78 131.13 \ 10808.78 114.73 10826 108 10867.81 91.66 11433.55 90.06 11743.4 90.43 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11743.06 92.88 11750.07 90.44 11743.07 87.98 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 10899 155.6 0 36 8 -tdna_vaf ", label=tdna_vaf, lp="10899,157.5", pos="e,11752,90.442 10917,223.57 10912,206.93 10897,169.98 10870,153 10858,145.43 10816,155.59 10807,145 10795,131.13 10809,114.73 10826,\ 108 10868,91.66 11434,90.064 11743,90.431"]; manta_call_regions -> somatic [_draw_="c 7 -#000000 B 13 5084.75 223.52 5074.99 220.74 5064.04 217.68 5054 215 5039.83 211.22 5031.02 218.56 5022 207 5019.54 203.85 5019.19 \ 200.85 5022 198 5037.78 181.96 5655.93 180.57 5934.4 180.76 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5934.02 183.21 5941.03 180.76 5934.03 178.31 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5061.5 200.6 0 79 18 -manta_call_regions ", label=manta_call_regions, lp="5061.5,202.5", pos="e,5942.5,180.76 5084.8,223.52 5075,220.74 5064,217.68 5054,215 5039.8,211.22 5031,218.56 5022,207 5019.5,203.85 5019.2,200.85 5022,\ 198 5037.8,181.96 5655.9,180.57 5934.4,180.76"]; top_score_metric -> pvacseq [_draw_="c 7 -#000000 B 19 11029.31 223.56 11038.58 220.62 11049.21 217.46 11059 215 11178.45 184.99 11224.01 223.01 11331 162 11335.65 159.35 \ 11334.49 155.89 11339 153 11374.99 129.94 11389.54 135.38 11431 125 11468.8 115.54 11478.31 112.57 11517 108 11590.61 99.31 11671.82 \ 94.82 11743.41 92.57 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11743.21 95.02 11750.13 92.36 11743.06 90.13 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 11374 155.6 0 70 16 -top_score_metric ", label=top_score_metric, lp="11374,157.5", pos="e,11752,92.317 11029,223.56 11039,220.62 11049,217.46 11059,215 11178,184.99 11224,223.01 11331,162 11336,159.35 11334,155.89 11339,\ 153 11375,129.94 11390,135.38 11431,125 11469,115.54 11478,112.57 11517,108 11591,99.309 11672,94.816 11743,92.567"]; peptide_sequence_length -> pvacseq [_draw_="c 7 -#000000 B 19 11160.9 223.54 11174.14 220.36 11189.72 217.01 11204 215 11234.64 210.68 11313.67 216.86 11343 207 11377 195.56 \ 11382.98 185.59 11410 162 11414.03 158.48 11413.38 155.7 11418 153 11500.74 104.55 11533.9 120.25 11629 108 11665.9 103.25 11705.41 \ 99.82 11743.52 97.35 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11743.29 99.82 11750.12 96.93 11742.98 94.93 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 11471 155.6 0 106 23 -peptide_sequence_length ", label=peptide_sequence_length, lp="11471,157.5", pos="e,11752,96.839 11161,223.54 11174,220.36 11190,217.01 11204,215 11235,210.68 11314,216.86 11343,207 11377,195.56 11383,185.59 11410,\ 162 11414,158.48 11413,155.7 11418,153 11501,104.55 11534,120.25 11629,108 11666,103.25 11705,99.822 11744,97.352"]; additional_report_columns -> pvacseq [_draw_="c 7 -#000000 B 19 11311.74 223.56 11324.92 220.56 11340.1 217.35 11354 215 11384.01 209.94 11392.63 214.96 11422 207 11470.22 193.94 \ 11484.58 191.35 11525 162 11529.33 158.86 11528.38 155.69 11533 153 11628.29 97.5 11667.6 121.82 11777 108 11798.66 105.26 11821.96 \ 102.66 11844.05 100.36 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11844.23 102.8 11850.94 99.65 11843.73 97.93 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 11587.5 155.6 0 109 25 -additional_report_columns ", label=additional_report_columns, lp="11588,157.5", pos="e,11852,99.49 11312,223.56 11325,220.56 11340,217.35 11354,215 11384,209.94 11393,214.96 11422,207 11470,193.94 11485,191.35 11525,\ 162 11529,158.86 11528,155.69 11533,153 11628,97.504 11668,121.82 11777,108 11799,105.26 11822,102.66 11844,100.36"]; sample_name -> rnaseq [_draw_="c 7 -#000000 B 7 3627.72 223.55 3609.78 215.25 3580.66 203.13 3554 198 3497.81 187.19 3167.56 183.22 2962.57 181.79 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2962.65 179.34 2955.63 181.74 2962.61 184.24 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3613 200.6 0 58 11 -sample_name ", label=sample_name, lp="3613,202.5", pos="e,2954.1,181.73 3627.7,223.55 3609.8,215.25 3580.7,203.13 3554,198 3497.8,187.19 3167.6,183.22 2962.6,181.79"]; annotate_coding_only -> germline [_draw_="c 7 -#000000 B 13 8790.36 223.55 8801.93 220.4 8815.51 217.09 8828 215 8850.21 211.29 8908.84 217.03 8929 207 8933.79 204.62 8932.13 \ 200.23 8937 198 8960.27 187.36 9628.41 183.17 9977.69 181.7 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9977.63 184.15 9984.62 181.67 9977.61 179.25 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8982.5 200.6 0 91 20 -annotate_coding_only ", label=annotate_coding_only, lp="8982.5,202.5", pos="e,9986.1,181.66 8790.4,223.55 8801.9,220.4 8815.5,217.09 8828,215 8850.2,211.29 8908.8,217.03 8929,207 8933.8,204.62 8932.1,200.23 \ 8937,198 8960.3,187.36 9628.4,183.17 9977.7,181.7"]; annotate_coding_only -> somatic [_draw_="c 7 -#000000 B 13 8735.32 223.55 8723.42 220.19 8709.14 216.72 8696 215 8669.34 211.51 7753.47 215.61 7728 207 7721.68 204.87 7722.31 \ 200.14 7716 198 7680.34 185.91 6588.34 182.21 6201.9 181.27 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6201.98 178.82 6194.98 181.26 6201.97 183.72 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 7773.5 200.6 0 91 20 -annotate_coding_only ", label=annotate_coding_only, lp="7773.5,202.5", pos="e,6193.5,181.25 8735.3,223.55 8723.4,220.19 8709.1,216.72 8696,215 8669.3,211.51 7753.5,215.61 7728,207 7721.7,204.87 7722.3,200.14 \ 7716,198 7680.3,185.91 6588.3,182.21 6201.9,181.27"]; rna_readgroups -> rnaseq [_draw_="c 7 -#000000 B 7 3719.92 223.54 3701.16 215.23 3670.74 203.1 3643 198 3578.32 186.1 3189.79 182.53 2962.74 181.46 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2962.93 179.01 2955.91 181.43 2962.9 183.91 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3704 200.6 0 58 13 -read_group_id ", label=read_group_id, lp="3704,202.5", pos="e,2954.4,181.42 3719.9,223.54 3701.2,215.23 3670.7,203.1 3643,198 3578.3,186.1 3189.8,182.53 2962.7,181.46"]; filter_docm_variants -> somatic [_draw_="c 7 -#000000 B 13 5385.7 223.57 5374.77 220.39 5361.88 217.04 5350 215 5338.03 212.94 5249.27 215.9 5241 207 5238.28 204.07 5238.2 \ 200.86 5241 198 5252.94 185.81 5703.41 182.35 5934.36 181.38 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5934.32 183.83 5941.31 181.35 5934.3 178.93 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5282 200.6 0 82 20 -filter_docm_variants ", label=filter_docm_variants, lp="5282,202.5", pos="e,5942.8,181.34 5385.7,223.57 5374.8,220.39 5361.9,217.04 5350,215 5338,212.94 5249.3,215.9 5241,207 5238.3,204.07 5238.2,200.86 \ 5241,198 5252.9,185.81 5703.4,182.35 5934.4,181.38"]; epitope_lengths -> pvacseq [_draw_="c 7 -#000000 B 22 11424.23 223.54 11433.34 220.39 11444.05 217.08 11454 215 11490.28 207.42 11501.08 216.12 11537 207 11586.6 194.4 \ 11601.43 191.85 11643 162 11647.35 158.88 11646.51 155.91 11651 153 11685.81 130.47 11699.71 134.82 11740 125 11782.52 114.63 11793.84 \ 115.24 11837 108 11851.14 105.63 11866.35 103.15 11880.71 100.84 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11881.03 103.27 11887.56 99.74 11880.26 98.43 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 11684.5 155.6 0 67 15 -epitope_lengths ", label=epitope_lengths, lp="11684,157.5", pos="e,11889,99.498 11424,223.54 11433,220.39 11444,217.08 11454,215 11490,207.42 11501,216.12 11537,207 11587,194.4 11601,191.85 11643,\ 162 11647,158.88 11647,155.91 11651,153 11686,130.47 11700,134.82 11740,125 11783,114.63 11794,115.24 11837,108 11851,105.63 11866,\ 103.15 11881,100.84"]; rnaseq -> stringtie_transcript_gtf [_draw_="c 7 -#000000 B 7 2641.86 178.8 2189.58 178.08 898.57 174.91 708 162 518.81 149.19 299.27 83.44 217.19 57.01 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 218.08 54.73 210.67 54.9 216.57 59.39 ", pos="e,209.23,54.434 2641.9,178.8 2189.6,178.08 898.57,174.91 708,162 518.81,149.19 299.27,83.437 217.19,57.014"]; rnaseq -> transcript_abundance_h5 [_draw_="c 7 -#000000 B 7 2641.65 179.01 2200.58 178.86 966.63 177.06 784 162 616.95 148.22 424.81 83.54 352.03 57.2 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 352.99 54.95 345.58 54.85 351.31 59.55 ", pos="e,344.15,54.335 2641.6,179.01 2200.6,178.86 966.63,177.06 784,162 616.95,148.22 424.81,83.545 352.03,57.204"]; rnaseq -> stringtie_gene_expression_tsv [_draw_="c 7 -#000000 B 7 2641.79 179.42 2209.47 180.34 1017.45 181.09 841 162 709.07 147.73 561.05 84.62 503.13 57.95 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 504.32 55.81 496.94 55.08 502.26 60.25 ", pos="e,495.57,54.442 2641.8,179.42 2209.5,180.34 1017.4,181.09 841,162 709.07,147.73 561.05,84.616 503.13,57.954"]; rnaseq -> final_bam [_draw_="c 7 -#000000 B 13 2641.5 178.83 2222.28 178.19 1094.28 175.25 926 162 874.93 157.98 861.15 159.42 812 145 765.23 131.28 756.28 120.36 \ 712 100 680.99 85.74 645.44 68.99 622.18 57.97 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 623.24 55.76 615.86 54.97 621.14 60.18 ", pos="e,614.49,54.322 2641.5,178.83 2222.3,178.19 1094.3,175.25 926,162 874.93,157.98 861.15,159.42 812,145 765.23,131.28 756.28,120.36 \ 712,100 680.99,85.742 645.44,68.989 622.18,57.968"]; rnaseq -> chart [_draw_="c 7 -#000000 B 10 2641.6 179.11 2234.5 179.16 1162.35 177.78 1002 162 852.57 147.3 813.02 130.7 679 63 676.56 61.77 674.09 60.34 \ 671.68 58.84 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 673.26 56.95 666.08 55.1 670.54 61.02 ", pos="e,664.82,54.259 2641.6,179.11 2234.5,179.16 1162.3,177.78 1002,162 852.57,147.3 813.02,130.7 679,63 676.56,61.769 674.09,60.337 \ 671.68,58.836"]; rnaseq -> transcript_abundance_tsv [_draw_="c 7 -#000000 B 7 2641.59 178.48 2227.33 176.95 1128.06 171.99 1050 162 939.82 147.89 819.73 85.67 771.66 58.62 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 772.92 56.52 765.63 55.2 770.5 60.78 ", pos="e,764.31,54.447 2641.6,178.48 2227.3,176.95 1128.1,171.99 1050,162 939.82,147.89 819.73,85.667 771.66,58.623"]; rnaseq -> metrics [_draw_="c 7 -#000000 B 7 2641.82 179.22 2233.09 179.56 1158.18 178.84 1083 162 997.19 142.79 907.42 85.03 870.01 58.99 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 871.62 57.12 864.48 55.09 868.79 61.13 ", pos="e,863.24,54.222 2641.8,179.22 2233.1,179.56 1158.2,178.84 1083,162 997.19,142.79 907.42,85.03 870.01,58.987"]; rnaseq -> fusion_evidence [_draw_="c 7 -#000000 B 10 2641.86 178.74 2229.61 177.89 1141 174.47 1105 162 1042.42 140.32 1043.86 104.96 987 71 978.81 66.11 969.5 61.58 \ 960.85 57.76 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 961.93 55.56 954.53 55.05 960 60.06 ", pos="e,953.14,54.458 2641.9,178.74 2229.6,177.89 1141,174.47 1105,162 1042.4,140.32 1043.9,104.96 987,71 978.81,66.11 969.5,61.581 960.85,\ 57.759"]; rnaseq -> gene_abundance [_draw_="c 7 -#000000 B 10 2641.76 178.69 2176.87 177.64 822.33 173.61 623 162 395.11 148.73 338.96 124.09 119 63 112.37 61.16 105.34 59.03 \ 98.63 56.91 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 99.81 54.72 92.39 54.91 98.31 59.38 ", pos="e,90.951,54.451 2641.8,178.69 2176.9,177.64 822.33,173.61 623,162 395.11,148.73 338.96,124.09 119,63 112.37,61.16 105.34,59.029 \ 98.63,56.912"]; rnaseq -> pvacseq [_draw_="c 7 -#000000 B 22 2954.16 178.49 3412.59 177.01 4794.43 172.64 5941 170 5972.76 169.93 10482.72 167.49 10514 162 10525.63 159.96 \ 10527.38 155.12 10539 153 10553.65 150.33 11062.92 153.71 11075 145 11082.64 139.49 11074.97 131.27 11082 125 11107.5 102.25 11123.08 \ 112.17 11157 108 11266.01 94.61 11548.6 91.33 11743.44 90.75 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11743.28 93.2 11750.27 90.73 11743.26 88.3 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 11107.5 133.1 0 51 10 -rnaseq_bam ", label=rnaseq_bam, lp="11108,135", pos="e,11752,90.727 2954.2,178.49 3412.6,177.01 4794.4,172.64 5941,170 5972.8,169.93 10483,167.49 10514,162 10526,159.96 10527,155.12 \ 10539,153 10554,150.33 11063,153.71 11075,145 11083,139.49 11075,131.27 11082,125 11108,102.25 11123,112.17 11157,108 11266,94.605 \ 11549,91.333 11743,90.75"]; rnaseq -> pvacseq [_draw_="c 7 -#000000 B 22 2954.16 178.49 3412.59 177.01 4794.43 172.65 5941 170 5956.8 169.96 10476.84 166.47 10492 162 10499.1 159.91 10498.93 \ 155.16 10506 153 10525.29 147.1 10851.75 155.46 10869 145 10877.67 139.74 10871.81 130.98 10880 125 10911.82 101.77 10927.82 112.14 \ 10967 108 11111.85 92.71 11502.24 90.29 11743.11 90.35 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11743.1 92.8 11750.1 90.35 11743.1 87.9 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 10923 133.1 0 86 20 -gene_expression_file ", label=gene_expression_file, lp="10923,135", pos="e,11752,90.35 2954.2,178.49 3412.6,177.01 4794.4,172.65 5941,170 5956.8,169.96 10477,166.47 10492,162 10499,159.91 10499,155.16 \ 10506,153 10525,147.1 10852,155.46 10869,145 10878,139.74 10872,130.98 10880,125 10912,101.77 10928,112.14 10967,108 11112,92.706 \ 11502,90.286 11743,90.347"]; rnaseq -> pvacseq [_draw_="c 7 -#000000 B 22 2954.16 178.49 3412.59 177.01 4794.43 172.65 5941 170 5956.84 169.96 10487.81 166.48 10503 162 10510.1 159.91 \ 10509.92 155.15 10517 153 10540.71 145.8 10942.92 159.52 10963 145 10970.63 139.48 10962.71 130.97 10970 125 11012.35 90.31 11037.43 \ 112.33 11092 108 11213.65 98.34 11532.57 94.07 11743.57 92.25 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11743.48 94.71 11750.45 92.2 11743.43 89.81 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 11022 133.1 0 104 26 -transcript_expression_file ", label=transcript_expression_file, lp="11022,135", pos="e,11752,92.183 2954.2,178.49 3412.6,177.01 4794.4,172.65 5941,170 5956.8,169.96 10488,166.48 10503,162 10510,159.91 10510,155.15 \ 10517,153 10541,145.8 10943,159.52 10963,145 10971,139.48 10963,130.97 10970,125 11012,90.309 11037,112.33 11092,108 11214,98.343 \ 11533,94.071 11744,92.255"]; germline -> verify_bam_id_depth [_draw_="c 7 -#000000 B 4 10179.99 170.68 10164.17 148.75 10121.15 89.15 10100.86 61.05 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 10102.97 59.79 10096.89 55.54 10099 62.65 ", pos="e,10096,54.317 10180,170.68 10164,148.75 10121,89.151 10101,61.047"]; germline -> insert_size_metrics [_draw_="c 7 -#000000 B 7 10186.26 170.74 10187 152.48 10189.7 107.41 10199 71 10199.76 68.01 10200.8 64.9 10201.91 61.93 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 10204.14 62.96 10204.54 55.55 10199.61 61.1 ", pos="e,10205,54.152 10186,170.74 10187,152.48 10190,107.41 10199,71 10200,68.011 10201,64.901 10202,61.932"]; germline -> flagstats [_draw_="c 7 -#000000 B 10 10187.95 170.68 10193.83 145.66 10211.11 72.73 10213 71 10230.28 55.25 10242.76 70.23 10265 63 10268.86 61.75 \ 10272.81 60.08 10276.58 58.28 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 10277.52 60.56 10282.63 55.19 10275.29 56.2 ", pos="e,10284,54.495 10188,170.68 10194,145.66 10211,72.725 10213,71 10230,55.246 10243,70.226 10265,63 10269,61.747 10273,60.082 10277,\ 58.284"]; germline -> hs_metrics [_draw_="c 7 -#000000 B 13 10189.95 170.72 10191.25 167.95 10192.7 164.85 10194 162 10212.3 121.79 10198.06 96.7 10234 71 10251.05 58.81 \ 10307.68 68.15 10328 63 10333.17 61.69 10338.52 59.77 10343.55 57.68 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 10344.31 60.03 10349.72 54.95 10342.32 55.55 ", pos="e,10351,54.335 10190,170.72 10191,167.95 10193,164.85 10194,162 10212,121.79 10198,96.698 10234,71 10251,58.806 10308,68.146 10328,\ 63 10333,61.691 10339,59.769 10344,57.683"]; germline -> limited_vcf [_draw_="c 7 -#000000 B 13 10192.93 170.57 10194.99 167.91 10197.18 164.9 10199 162 10223.09 123.61 10207.01 95.71 10245 71 10259.74 61.42 \ 10385.89 67.02 10403 63 10408.19 61.78 10413.55 59.9 10418.58 57.82 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 10419.35 60.16 10424.75 55.08 10417.36 55.68 ", pos="e,10426,54.467 10193,170.57 10195,167.91 10197,164.9 10199,162 10223,123.61 10207,95.709 10245,71 10260,61.416 10386,67.022 10403,\ 63 10408,61.78 10414,59.897 10419,57.82"]; germline -> mark_duplicates_metrics [_draw_="c 7 -#000000 B 13 10196.66 170.57 10199.56 168 10202.56 165.04 10205 162 10234 125.83 10216.43 95.15 10256 71 10277.07 58.14 10453.53 \ 66.22 10478 63 10489.57 61.48 10501.98 58.97 10513.28 56.35 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 10513.57 58.8 10519.8 54.79 10512.42 54.04 ", pos="e,10521,54.434 10197,170.57 10200,168 10203,165.04 10205,162 10234,125.83 10216,95.154 10256,71 10277,58.141 10454,66.222 10478,\ 63 10490,61.477 10502,58.975 10513,56.352"]; germline -> per_base_coverage_metrics [_draw_="c 7 -#000000 B 16 10200.17 170.65 10203.9 168.12 10207.78 165.16 10211 162 10217.6 155.52 10217.97 152.76 10223 145 10243.83 112.9 \ 10233.96 90.29 10267 71 10284.08 61.03 10603.35 65.29 10623 63 10635.84 61.5 10649.67 58.92 10662.16 56.22 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 10662.37 58.68 10668.67 54.76 10661.3 53.9 ", pos="e,10670,54.429 10200,170.65 10204,168.12 10208,165.16 10211,162 10218,155.52 10218,152.76 10223,145 10244,112.9 10234,90.291 10267,\ 71 10284,61.026 10603,65.288 10623,63 10636,61.505 10650,58.922 10662,56.215"]; germline -> germline_final_vcf [_draw_="c 7 -#000000 B 16 10205.13 170.56 10209.6 168.13 10214.16 165.25 10218 162 10225.26 155.85 10225.56 152.8 10231 145 10242.15 129.03 \ 10261 80.52 10278 71 10302.34 57.37 10752.43 67.25 10780 63 10788.57 61.68 10797.66 59.39 10805.99 56.92 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 10806.64 59.29 10812.59 54.86 10805.18 54.61 ", pos="e,10814,54.413 10205,170.56 10210,168.13 10214,165.25 10218,162 10225,155.85 10226,152.8 10231,145 10242,129.03 10261,80.518 10278,\ 71 10302,57.373 10752,67.248 10780,63 10789,61.679 10798,59.394 10806,56.921"]; germline -> per_target_coverage_metrics [_draw_="c 7 -#000000 B 13 10206.89 170.51 10212.82 167.93 10219.23 164.99 10225 162 10294.23 126.12 10300.07 92.58 10375 71 10430.1 55.13 \ 10834 69.22 10891 63 10904.31 61.55 10918.66 58.98 10931.61 56.27 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 10932.1 58.67 10938.42 54.8 10931.06 53.88 ", pos="e,10940,54.478 10207,170.51 10213,167.93 10219,164.99 10225,162 10294,126.12 10300,92.579 10375,71 10430,55.131 10834,69.224 10891,\ 63 10904,61.546 10919,58.976 10932,56.267"]; germline -> cram [_draw_="c 7 -#000000 B 13 10337.41 170.55 10355.13 168.3 10368.28 165.5 10372 162 10401.81 133.97 10355.1 97.83 10386 71 10400.01 58.83 \ 11036.35 68.73 11054 63 11056.89 62.06 11059.73 60.64 11062.39 59.01 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11063.38 61.32 11067.69 55.28 11060.55 57.31 ", pos="e,11069,54.408 10337,170.55 10355,168.3 10368,165.5 10372,162 10402,133.97 10355,97.83 10386,71 10400,58.833 11036,68.734 11054,\ 63 11057,62.061 11060,60.641 11062,59.013"]; germline -> optitype_plot [_draw_="c 7 -#000000 B 13 10341.93 170.55 10360.79 168.3 10374.9 165.49 10379 162 10410.76 134.95 10369.23 96.82 10402 71 10417.21 59.02 \ 11079.99 66.66 11099 63 11105.19 61.81 11111.64 59.8 11117.63 57.56 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11118.45 59.87 11124.04 55 11116.63 55.32 ", pos="e,11125,54.44 10342,170.55 10361,168.3 10375,165.49 10379,162 10411,134.95 10369,96.819 10402,71 10417,59.016 11080,66.658 11099,\ 63 11105,61.809 11112,59.796 11118,57.564"]; germline -> alignment_summary_metrics [_draw_="c 7 -#000000 B 13 10340.3 170.54 10363.16 168.24 10380.84 165.41 10386 162 10421.52 138.51 10382.16 96.85 10416 71 10424.48 64.52 \ 11173.39 64.12 11184 63 11197.72 61.55 11212.53 58.92 11225.83 56.16 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11226.09 58.61 11232.42 54.74 11225.06 53.82 ", pos="e,11234,54.427 10340,170.54 10363,168.24 10381,165.41 10386,162 10422,138.51 10382,96.852 10416,71 10424,64.524 11173,64.119 11184,\ 63 11198,61.553 11213,58.923 11226,56.157"]; germline -> germline_vep_summary [_draw_="c 7 -#000000 B 13 10369.59 170.52 10379.81 168.24 10388.25 165.44 10394 162 10430.92 139.92 10392.63 96.87 10427 71 10437.23 63.3 \ 11336.29 64.56 11349 63 11360.23 61.63 11372.26 59.14 11383.16 56.49 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11383.6 58.91 11389.79 54.82 11382.4 54.16 ", pos="e,11391,54.448 10370,170.52 10380,168.24 10388,165.44 10394,162 10431,139.92 10393,96.873 10427,71 10437,63.298 11336,64.556 11349,\ 63 11360,61.625 11372,59.143 11383,56.492"]; germline -> per_base_hs_metrics [_draw_="c 7 -#000000 B 13 10353.94 170.5 10378.39 168.21 10397.3 165.4 10403 162 10440.36 139.74 10403.76 96.49 10439 71 10450.8 62.46 11473.56 \ 64.97 11488 63 11497.72 61.67 11508.08 59.3 11517.53 56.74 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11518.04 59.14 11524.1 54.87 11516.7 54.42 ", pos="e,11526,54.457 10354,170.5 10378,168.21 10397,165.4 10403,162 10440,139.74 10404,96.495 10439,71 10451,62.46 11474,64.97 11488,63 \ 11498,61.673 11508,59.298 11518,56.736"]; germline -> coding_vcf [_draw_="c 7 -#000000 B 13 10360.79 170.52 10386.26 168.22 10405.99 165.41 10412 162 10450.59 140.13 10416.44 96.12 10453 71 10466.26 61.89 \ 11595.28 66.41 11611 63 11616.19 61.87 11621.53 59.99 11626.51 57.88 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11627.25 60.24 11632.59 55.09 11625.21 55.79 ", pos="e,11634,54.455 10361,170.52 10386,168.22 10406,165.41 10412,162 10451,140.13 10416,96.124 10453,71 10466,61.891 11595,66.412 11611,\ 63 11616,61.873 11622,59.992 11627,57.882"]; germline -> optitype_tsv [_draw_="c 7 -#000000 B 13 10367.92 170.5 10394.28 168.21 10414.7 165.4 10421 162 10460.53 140.66 10427.68 96.01 10465 71 10479.07 61.58 \ 11667.39 66.29 11684 63 11689.81 61.85 11695.83 59.91 11701.44 57.74 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11702.37 60 11707.89 55.04 11700.49 55.48 ", pos="e,11709,54.46 10368,170.5 10394,168.21 10415,165.4 10421,162 10461,140.66 10428,96.006 10465,71 10479,61.576 11667,66.29 11684,63 \ 11690,61.85 11696,59.907 11701,57.737"]; germline -> gvcf [_draw_="c 7 -#000000 B 16 10386 172.07 10404.58 169.6 10420.13 166.32 10430 162 10478.67 140.69 10468 100.55 10517 80 10565.19 59.79 10699.75 \ 72.21 10752 71 10780.13 70.35 11738.31 71.91 11765 63 11767.64 62.12 11770.22 60.81 11772.65 59.3 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11773.92 61.41 11778.14 55.3 11771.04 57.45 ", pos="e,11779,54.414 10386,172.07 10405,169.6 10420,166.32 10430,162 10479,140.69 10468,100.55 10517,80 10565,59.791 10700,72.206 10752,\ 71 10780,70.35 11738,71.911 11765,63 11768,62.119 11770,60.811 11773,59.303"]; germline -> verify_bam_id_metrics [_draw_="c 7 -#000000 B 10 10127.98 170.54 10110.02 167.87 10090.18 164.87 10072 162 10026.6 154.83 10014.98 154.43 9970 145 9839.27 117.61 \ 9686.28 76.07 9616.78 56.68 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9617.58 54.36 9610.18 54.83 9616.27 59.08 ", pos="e,9608.7,54.425 10128,170.54 10110,167.87 10090,164.87 10072,162 10027,154.83 10015,154.43 9970,145 9839.3,117.61 9686.3,76.072 \ 9616.8,56.678"]; germline -> insert_size_histogram [_draw_="c 7 -#000000 B 7 10147.35 170.5 10118.27 163.96 10077.49 154.46 10042 145 9932.35 115.78 9804 76.03 9743.67 57.02 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9744.47 54.7 9737.06 54.93 9743 59.38 ", pos="e,9735.6,54.477 10147,170.5 10118,163.96 10077,154.46 10042,145 9932.3,115.78 9804,76.035 9743.7,57.019"]; germline -> summary_hs_metrics [_draw_="c 7 -#000000 B 7 10163.17 170.52 10144.75 163.67 10118.19 153.76 10095 145 10011.78 113.55 9913.74 75.91 9865.64 57.41 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9866.63 55.17 9859.22 54.94 9864.87 59.74 ", pos="e,9857.8,54.4 10163,170.52 10145,163.67 10118,153.76 10095,145 10012,113.55 9913.7,75.914 9865.6,57.414"]; germline -> per_target_hs_metrics [_draw_="c 7 -#000000 B 4 10172.11 170.68 10134.51 148.16 10030.54 85.86 9985.39 58.81 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9986.73 56.76 9979.47 55.27 9984.21 60.97 ", pos="e,9978.2,54.488 10172,170.68 10135,148.16 10031,85.864 9985.4,58.814"]; germline -> phase_vcf [_draw_="c 7 -#000000 B 7 10385.87 175.04 10468.64 172.47 10549.7 168.37 10568 162 10575.54 159.38 10582.86 154.62 10588.92 149.89 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 10590.43 151.83 10594.22 145.45 10587.28 148.07 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 10609 155.6 0 52 12 -germline_vcf ", label=germline_vcf, lp="10609,157.5", pos="e,10595,144.48 10386,175.04 10469,172.47 10550,168.37 10568,162 10576,159.38 10583,154.62 10589,149.89"]; extract_alleles [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 10476.5 125.5 10476.5 144.5 10565.5 144.5 10565.5 125.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 10521 132.5 0 73 15 -extract_alleles ", height=0.27778, label=extract_alleles, pos="10521,135", rects="10476,125.5,10566,144.5", width=1.2361]; germline -> extract_alleles [_draw_="c 7 -#000000 B 7 10385.57 174.45 10456.04 171.84 10519.42 167.87 10525 162 10527.48 159.39 10528.05 155.93 10527.66 152.38 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 10530.06 151.88 10525.84 145.78 10525.34 153.18 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 10547 155.6 0 40 11 -allele_file ", label=allele_file, lp="10547,157.5", pos="e,10525,144.32 10386,174.45 10456,171.84 10519,167.87 10525,162 10527,159.39 10528,155.93 10528,152.38"]; phase_vcf -> phased_vcf [_draw_="c 7 -#000000 B 13 10570.04 126 10557.9 122.81 10546.76 119.34 10545 117 10542.59 113.8 10542.22 110.88 10545 108 10596.94 54.3 11816.05 \ 79.13 11889 63 11894.54 61.77 11900.28 59.8 11905.63 57.62 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11906.28 60.01 11911.72 54.96 11904.32 55.52 ", pos="e,11913,54.353 10570,126 10558,122.81 10547,119.34 10545,117 10543,113.8 10542,110.88 10545,108 10597,54.296 11816,79.134 11889,\ 63 11895,61.774 11900,59.8 11906,57.623"]; phase_vcf -> pvacseq [_draw_="c 7 -#000000 B 10 10570.5 125.56 10559.48 122.45 10549.6 119.16 10548 117 10545.62 113.79 10545.19 110.85 10548 108 10558.36 97.51 \ 11360.29 93.14 11743.43 91.65 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11743.34 94.1 11750.33 91.63 11743.32 89.2 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 10609 110.6 0 122 28 -phased_proximal_variants_vcf ", label=phased_proximal_variants_vcf, lp="10609,112.5", pos="e,11752,91.62 10571,125.56 10559,122.45 10550,119.16 10548,117 10546,113.79 10545,110.85 10548,108 10558,97.514 11360,93.144 11743,\ 91.653"]; somatic -> pindel_unfiltered_vcf [_draw_="c 7 -#000000 B 10 6191.86 170.51 6228.61 167.9 6268.94 164.93 6306 162 6648.65 134.9 6736.35 132.33 7073 63 7081.66 61.22 7090.9 \ 58.94 7099.55 56.64 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7100.06 59.04 7106.18 54.83 7098.78 54.31 ", pos="e,7107.6,54.436 6191.9,170.51 6228.6,167.9 6268.9,164.93 6306,162 6648.6,134.9 6736.3,132.33 7073,63 7081.7,61.216 7090.9,58.94 \ 7099.6,56.637"]; somatic -> tumor_per_target_hs_metrics [_draw_="c 7 -#000000 B 13 6193.44 172.1 6246.66 169.1 6309.36 165.49 6366 162 6480.26 154.96 6509.15 156.89 6623 145 6878.87 118.27 6942.49 \ 106.76 7196 63 7207.91 60.94 7220.73 58.48 7232.67 56.08 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7232.92 58.52 7239.29 54.73 7231.94 53.72 ", pos="e,7240.8,54.425 6193.4,172.1 6246.7,169.1 6309.4,165.49 6366,162 6480.3,154.96 6509.1,156.89 6623,145 6878.9,118.27 6942.5,106.76 \ 7196,63 7207.9,60.944 7220.7,58.48 7232.7,56.075"]; somatic -> tumor_only_variants [_draw_="c 7 -#000000 B 16 6193.42 174.09 6268.46 170.99 6365.71 166.7 6452 162 6568.96 155.63 6598.41 156.25 6715 145 6971.91 120.22 7034.78 \ 102.1 7291 71 7322.09 67.23 7330.25 68.94 7361 63 7369.72 61.32 7379.01 59.04 7387.67 56.7 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7388.2 59.09 7394.29 54.85 7386.89 54.37 ", pos="e,7395.7,54.448 6193.4,174.09 6268.5,170.99 6365.7,166.7 6452,162 6569,155.63 6598.4,156.25 6715,145 6971.9,120.22 7034.8,102.1 \ 7291,71 7322.1,67.227 7330.3,68.936 7361,63 7369.7,61.317 7379,59.037 7387.7,56.695"]; somatic -> normal_mark_duplicates_metrics [_draw_="c 7 -#000000 B 16 6193.49 175.39 6288.4 172.43 6421.93 167.8 6539 162 6811.62 148.5 6880.43 142.81 7150 100 7219.65 88.94 7235.94 \ 79.06 7306 71 7383.79 62.05 7404.2 71.84 7482 63 7496.72 61.33 7512.63 58.72 7527.05 56.05 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7527.44 58.47 7533.86 54.75 7526.53 53.65 ", pos="e,7535.4,54.47 6193.5,175.39 6288.4,172.43 6421.9,167.8 6539,162 6811.6,148.5 6880.4,142.81 7150,100 7219.6,88.939 7235.9,79.065 \ 7306,71 7383.8,62.045 7404.2,71.838 7482,63 7496.7,61.327 7512.6,58.72 7527.1,56.046"]; somatic -> diploid_variants [_draw_="c 7 -#000000 B 16 6193.31 176.29 6306.22 173.57 6476.77 168.83 6625 162 6882.65 150.14 6949 150.15 7202 100 7254.55 89.58 7265.9 \ 78.11 7319 71 7395.23 60.8 7589.23 76.2 7665 63 7672.56 61.68 7680.53 59.46 7687.86 57.04 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7688.28 59.49 7694.09 54.88 7686.67 54.86 ", pos="e,7695.5,54.383 6193.3,176.29 6306.2,173.57 6476.8,168.83 6625,162 6882.6,150.14 6949,150.15 7202,100 7254.6,89.583 7265.9,78.107 \ 7319,71 7395.2,60.798 7589.2,76.196 7665,63 7672.6,61.683 7680.5,59.457 7687.9,57.043"]; somatic -> strelka_unfiltered_vcf [_draw_="c 7 -#000000 B 10 6193.42 177.08 6325.11 174.75 6538.18 170.09 6722 162 7186.75 141.55 7306.41 146.78 7764 63 7773.22 61.31 7783.06 \ 59.01 7792.22 56.64 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7792.81 59.02 7798.95 54.85 7791.55 54.28 ", pos="e,7800.4,54.464 6193.4,177.08 6325.1,174.75 6538.2,170.09 6722,162 7186.7,141.55 7306.4,146.78 7764,63 7773.2,61.311 7783.1,59.007 \ 7792.2,56.64"]; somatic -> normal_target_coverage [_draw_="c 7 -#000000 B 13 6193.34 179.69 6408.3 179.91 6860.95 176.15 7242 145 7406.23 131.58 7446.54 120.79 7610 100 7641.13 96.04 7859.13 \ 68.67 7890 63 7900.07 61.15 7910.84 58.81 7920.91 56.45 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7921.46 58.84 7927.7 54.84 7920.32 54.08 ", pos="e,7929.2,54.485 6193.3,179.69 6408.3,179.91 6860.9,176.15 7242,145 7406.2,131.58 7446.5,120.79 7610,100 7641.1,96.04 7859.1,68.668 \ 7890,63 7900.1,61.151 7910.8,58.806 7920.9,56.453"]; somatic -> tumor_flagstats [_draw_="c 7 -#000000 B 13 6193.45 178.63 6381.89 177.67 6749.16 174.23 7061 162 7184.25 157.17 7215.15 156.03 7338 145 7646.91 117.27 7728.51 \ 131.52 8031 63 8037.81 61.46 8045 59.33 8051.73 57.1 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8052.13 59.55 8057.95 54.95 8050.53 54.92 ", pos="e,8059.4,54.458 6193.5,178.63 6381.9,177.67 6749.2,174.23 7061,162 7184.2,157.17 7215.2,156.03 7338,145 7646.9,117.27 7728.5,131.52 \ 8031,63 8037.8,61.457 8045,59.326 8051.7,57.095"]; somatic -> normal_per_base_hs_metrics [_draw_="c 7 -#000000 B 16 6193.16 178.55 6395.44 177.48 6806.75 173.91 7155 162 7298.23 157.1 7334.11 155.99 7477 145 7600.37 135.51 7630.99 \ 130.38 7754 117 7920.96 98.84 7962.81 93.31 8128 63 8139.41 60.91 8151.66 58.49 8163.16 56.15 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8163.53 58.57 8169.9 54.77 8162.55 53.77 ", pos="e,8171.4,54.461 6193.2,178.55 6395.4,177.48 6806.7,173.91 7155,162 7298.2,157.1 7334.1,155.99 7477,145 7600.4,135.51 7631,130.38 \ 7754,117 7921,98.842 7962.8,93.307 8128,63 8139.4,60.907 8151.7,58.49 8163.2,56.148"]; somatic -> tumor_summary_hs_metrics [_draw_="c 7 -#000000 B 13 6193.2 178.82 6410.8 178.14 6872.89 175.13 7263 162 7405.34 157.21 7441.08 156.98 7583 145 7898.65 118.36 7978.27 \ 113.42 8291 63 8302.9 61.08 8315.68 58.62 8327.54 56.18 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8327.74 58.64 8334.09 54.8 8326.74 53.84 ", pos="e,8335.6,54.491 6193.2,178.82 6410.8,178.14 6872.9,175.13 7263,162 7405.3,157.21 7441.1,156.98 7583,145 7898.6,118.36 7978.3,113.42 \ 8291,63 8302.9,61.082 8315.7,58.624 8327.5,56.177"]; somatic -> tumor_per_target_coverage_metrics [_draw_="c 7 -#000000 B 16 6193.2 178.98 6425.84 178.58 6940.56 176.01 7374 162 7520.34 157.27 7557.05 156.71 7703 145 7887.05 130.23 7932.46 \ 120.14 8116 100 8264.9 83.67 8302.64 83.66 8451 63 8465.93 60.92 8482.06 58.35 8496.94 55.85 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8497.08 58.31 8503.58 54.72 8496.26 53.48 ", pos="e,8505.1,54.469 6193.2,178.98 6425.8,178.58 6940.6,176.01 7374,162 7520.3,157.27 7557.1,156.71 7703,145 7887.1,130.23 7932.5,120.14 \ 8116,100 8264.9,83.665 8302.6,83.662 8451,63 8465.9,60.92 8482.1,58.353 8496.9,55.849"]; somatic -> normal_flagstats [_draw_="c 7 -#000000 B 13 6193.32 179.23 6440.71 179.29 7009.29 177.54 7487 162 7629.35 157.37 7664.98 155.68 7807 145 8181.93 116.8 8280.78 \ 139.07 8649 63 8656.44 61.46 8664.3 59.27 8671.63 56.96 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8672 59.42 8677.89 54.92 8670.47 54.76 ", pos="e,8679.3,54.447 6193.3,179.23 6440.7,179.29 7009.3,177.54 7487,162 7629.3,157.37 7665,155.68 7807,145 8181.9,116.8 8280.8,139.07 \ 8649,63 8656.4,61.464 8664.3,59.269 8671.6,56.964"]; somatic -> normal_alignment_summary_metrics [_draw_="c 7 -#000000 B 19 6193.14 178.93 6453.79 178.49 7073.9 175.92 7594 162 7772.32 157.23 7816.95 155.89 7995 145 8150.76 135.47 8189.61 \ 131.42 8345 117 8416.65 110.35 8434.63 109.15 8506 100 8615.23 85.99 8642.21 80.11 8751 63 8765.56 60.71 8781.26 58.18 8795.94 55.78 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8795.97 58.26 8802.48 54.71 8795.18 53.42 ", pos="e,8804,54.468 6193.1,178.93 6453.8,178.49 7073.9,175.92 7594,162 7772.3,157.23 7817,155.89 7995,145 8150.8,135.47 8189.6,131.42 \ 8345,117 8416.6,110.35 8434.6,109.15 8506,100 8615.2,85.992 8642.2,80.105 8751,63 8765.6,60.71 8781.3,58.178 8795.9,55.782"]; somatic -> tumor_per_base_coverage_metrics [_draw_="c 7 -#000000 B 13 6193.49 179.09 6470.47 178.97 7155.02 177.05 7728 162 7906.76 157.31 7951.62 157.63 8130 145 8497.55 118.98 8589.9 \ 112.74 8955 63 8969.59 61.01 8985.33 58.46 8999.84 55.95 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9000.26 58.36 9006.73 54.73 8999.41 53.53 ", pos="e,9008.2,54.473 6193.5,179.09 6470.5,178.97 7155,177.05 7728,162 7906.8,157.31 7951.6,157.63 8130,145 8497.6,118.98 8589.9,112.74 \ 8955,63 8969.6,61.012 8985.3,58.463 8999.8,55.946"]; somatic -> intervals_antitarget [_draw_="c 7 -#000000 B 19 6193.3 179.24 6486.43 179.49 7239.73 178.34 7869 162 8046.88 157.38 8091.47 157.07 8269 145 8483.22 130.44 8536.35 \ 121.34 8750 100 8871.41 87.87 8901.42 81.34 9023 71 9078.47 66.28 9093.13 72.42 9148 63 9156.73 61.5 9166.01 59.22 9174.6 56.82 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9175.09 59.23 9181.13 54.92 9173.72 54.52 ", pos="e,9182.6,54.492 6193.3,179.24 6486.4,179.49 7239.7,178.34 7869,162 8046.9,157.38 8091.5,157.07 8269,145 8483.2,130.44 8536.4,121.34 \ 8750,100 8871.4,87.873 8901.4,81.343 9023,71 9078.5,66.281 9093.1,72.419 9148,63 9156.7,61.501 9166,59.223 9174.6,56.817"]; somatic -> tumor_cram [_draw_="c 7 -#000000 B 13 6193.36 179.43 6501.86 180.16 7322.59 180.07 8007 162 8178.66 157.47 8221.69 156.82 8393 145 8781.34 118.21 8886.82 \ 155.22 9265 63 9270.55 61.65 9276.32 59.7 9281.75 57.59 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9282.45 59.96 9287.99 55.03 9280.59 55.42 ", pos="e,9289.4,54.458 6193.4,179.43 6501.9,180.16 7322.6,180.07 8007,162 8178.7,157.47 8221.7,156.82 8393,145 8781.3,118.21 8886.8,155.22 \ 9265,63 9270.5,61.648 9276.3,59.696 9281.8,57.594"]; somatic -> tumor_verify_bam_id_metrics [_draw_="c 7 -#000000 B 13 6193.26 179.08 6515.94 179.05 7402.03 177.45 8140 162 8364.52 157.3 8420.76 157.25 8645 145 8867.79 132.83 8924.61 \ 134.77 9145 100 9228.45 86.83 9324.91 67.74 9381.49 56.13 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9381.7 58.59 9388.07 54.78 9380.72 53.79 ", pos="e,9389.5,54.478 6193.3,179.08 6515.9,179.05 7402,177.45 8140,162 8364.5,157.3 8420.8,157.25 8645,145 8867.8,132.83 8924.6,134.77 \ 9145,100 9228.4,86.835 9324.9,67.736 9381.5,56.134"]; somatic -> tumor_per_base_hs_metrics [_draw_="c 7 -#000000 B 10 5942.68 178.67 5228.06 176.8 1695.81 167.28 1584 162 1500.64 158.06 1478.98 160.61 1397 145 1281.72 123.04 1149.31 \ 78.15 1090.68 57.22 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1091.75 54.99 1084.33 54.94 1090.09 59.61 ", pos="e,1082.9,54.425 5942.7,178.67 5228.1,176.8 1695.8,167.28 1584,162 1500.6,158.06 1479,160.61 1397,145 1281.7,123.04 1149.3,78.151 \ 1090.7,57.215"]; somatic -> final_tsv [_draw_="c 7 -#000000 B 10 5942.74 178.66 5244.01 176.73 1855.49 167.11 1748 162 1502.09 150.3 1434.25 147.45 1203 63 1199.36 61.67 1195.61 \ 60.03 1192 58.29 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1193.13 56.12 1185.78 55.12 1190.9 60.48 ", pos="e,1184.4,54.431 5942.7,178.66 5244,176.73 1855.5,167.11 1748,162 1502.1,150.3 1434.2,147.45 1203,63 1199.4,61.671 1195.6,60.028 \ 1192,58.293"]; somatic -> strelka_filtered_vcf [_draw_="c 7 -#000000 B 10 5942.72 178.63 5257.07 176.59 1985.97 166.64 1882 162 1627.32 150.62 1563.98 126.19 1317 63 1309.57 61.1 1301.65 \ 58.92 1294.11 56.78 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1294.97 54.48 1287.57 54.89 1293.62 59.18 ", pos="e,1286.1,54.475 5942.7,178.63 5257.1,176.59 1986,166.64 1882,162 1627.3,150.62 1564,126.19 1317,63 1309.6,61.098 1301.7,58.923 1294.1,\ 56.777"]; somatic -> tumor_hs_metrics [_draw_="c 7 -#000000 B 10 5942.69 178.63 5270.47 176.63 2118.36 166.99 2018 162 1751.13 148.72 1684.23 127.79 1425 63 1417.69 61.17 1409.91 \ 58.98 1402.56 56.78 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1403.64 54.55 1396.23 54.85 1402.21 59.24 ", pos="e,1394.8,54.413 5942.7,178.63 5270.5,176.63 2118.4,166.99 2018,162 1751.1,148.72 1684.2,127.79 1425,63 1417.7,61.173 1409.9,58.977 \ 1402.6,56.78"]; somatic -> normal_indel_bam_readcount_tsv [_draw_="c 7 -#000000 B 7 5942.71 178.64 5280.32 176.7 2212.78 167.46 2115 162 1898.64 149.93 1645.56 83.07 1552.61 56.7 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1553.5 54.41 1546.09 54.84 1552.15 59.12 ", pos="e,1544.6,54.426 5942.7,178.64 5280.3,176.7 2212.8,167.46 2115,162 1898.6,149.93 1645.6,83.072 1552.6,56.7"]; somatic -> somatic_variants [_draw_="c 7 -#000000 B 16 5942.6 178.67 5308.52 177 2478.06 169.14 2292 162 2187.36 157.98 2160.53 160.72 2057 145 1969.92 131.78 1949.6 \ 120.75 1864 100 1798.53 84.13 1781.87 81.18 1717 63 1710.22 61.1 1703.01 58.96 1696.12 56.85 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1697.07 54.58 1689.66 54.86 1695.63 59.27 ", pos="e,1688.2,54.414 5942.6,178.67 5308.5,177 2478.1,169.14 2292,162 2187.4,157.98 2160.5,160.72 2057,145 1969.9,131.78 1949.6,120.75 \ 1864,100 1798.5,84.128 1781.9,81.176 1717,63 1710.2,61.101 1703,58.96 1696.1,56.854"]; somatic -> normal_cram [_draw_="c 7 -#000000 B 10 5942.75 178.68 5327.48 177.09 2647.64 169.73 2471 162 2170.72 148.86 2091.84 142.61 1802 63 1796.37 61.45 1790.47 \ 59.49 1784.85 57.44 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1785.73 55.15 1778.31 54.97 1783.99 59.74 ", pos="e,1776.9,54.43 5942.8,178.68 5327.5,177.09 2647.6,169.73 2471,162 2170.7,148.86 2091.8,142.61 1802,63 1796.4,61.454 1790.5,59.486 \ 1784.8,57.441"]; somatic -> normal_verify_bam_id_depth [_draw_="c 7 -#000000 B 10 5942.93 178.99 5362.52 178.84 2945.55 177.29 2608 162 2318.71 148.89 2248.27 118.24 1964 63 1952.85 60.83 1940.87 \ 58.43 1929.57 56.12 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1930.33 53.77 1922.98 54.77 1929.34 58.57 ", pos="e,1921.5,54.465 5942.9,178.99 5362.5,178.84 2945.5,177.29 2608,162 2318.7,148.89 2248.3,118.24 1964,63 1952.8,60.833 1940.9,58.425 \ 1929.6,56.12"]; somatic -> normal_verify_bam_id_metrics [_draw_="c 7 -#000000 B 7 5942.57 179.09 5372.81 179.4 3042.06 179.58 2716 162 2475.11 149.01 2191.78 82.47 2088.36 56.45 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2089.21 54.14 2081.82 54.8 2088.01 58.89 ", pos="e,2080.4,54.426 5942.6,179.09 5372.8,179.4 3042.1,179.58 2716,162 2475.1,149.01 2191.8,82.471 2088.4,56.449"]; somatic -> normal_insert_size_metrics [_draw_="c 7 -#000000 B 10 5942.71 179.05 5385.39 179.19 3145.09 178.68 2831 162 2756.06 158.02 2737.11 156.83 2663 145 2509.73 120.54 2330.35 \ 76.61 2251.57 56.53 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2252.23 54.17 2244.84 54.81 2251.01 58.92 ", pos="e,2243.4,54.434 5942.7,179.05 5385.4,179.19 3145.1,178.68 2831,162 2756.1,158.02 2737.1,156.83 2663,145 2509.7,120.54 2330.3,76.611 \ 2251.6,56.532"]; somatic -> mutect_unfiltered_vcf [_draw_="c 7 -#000000 B 10 5942.61 178.95 5398.78 178.63 3258.02 176.48 2957 162 2713.72 150.3 2654.55 121.01 2418 63 2409.64 60.95 2400.7 \ 58.69 2392.19 56.51 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2393.04 54.2 2385.65 54.83 2391.82 58.95 ", pos="e,2384.2,54.451 5942.6,178.95 5398.8,178.63 3258,176.48 2957,162 2713.7,150.3 2654.6,121.01 2418,63 2409.6,60.95 2400.7,58.692 2392.2,\ 56.51"]; somatic -> docm_filtered_vcf [_draw_="c 7 -#000000 B 10 5942.52 178.84 5414.05 178.08 3383.49 174.4 3097 162 2839.68 150.86 2774.97 128.98 2526 63 2519.01 61.15 2511.58 \ 59.01 2504.5 56.89 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2505.24 54.56 2497.83 54.87 2503.82 59.25 ", pos="e,2496.4,54.432 5942.5,178.84 5414,178.08 3383.5,174.4 3097,162 2839.7,150.86 2775,128.98 2526,63 2519,61.148 2511.6,59.012 2504.5,\ 56.893"]; somatic -> final_filtered_vcf [_draw_="c 7 -#000000 B 10 5942.69 178.87 5431 178.26 3514.28 175.12 3243 162 2966.47 148.62 2896.26 131.45 2628 63 2621.2 61.27 2614 59.15 \ 2607.17 57 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2608.22 54.77 2600.8 54.96 2606.72 59.43 ", pos="e,2599.4,54.496 5942.7,178.87 5431,178.26 3514.3,175.12 3243,162 2966.5,148.62 2896.3,131.45 2628,63 2621.2,61.266 2614,59.148 2607.2,\ 57.004"]; somatic -> tumor_indel_bam_readcount_tsv [_draw_="c 7 -#000000 B 7 5942.58 178.93 5442.52 178.57 3605.58 176.29 3345 162 3118.22 149.57 2852.29 82.95 2754.54 56.67 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2755.29 54.33 2747.89 54.87 2754.01 59.06 ", pos="e,2746.4,54.478 5942.6,178.93 5442.5,178.57 3605.6,176.29 3345,162 3118.2,149.57 2852.3,82.951 2754.5,56.671"]; somatic -> reference_coverage [_draw_="c 7 -#000000 B 19 5942.78 179.21 5499.58 179.79 4006.25 180.31 3528 162 3419.82 157.86 3392.1 160.82 3285 145 3195.72 131.81 3174.52 \ 122.02 3087 100 3040.05 88.19 3029.39 80.89 2982 71 2957.39 65.87 2950.61 68.16 2926 63 2917.69 61.26 2908.84 59.02 2900.53 56.74 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2901.31 54.41 2893.9 54.88 2899.98 59.13 ", pos="e,2892.4,54.467 5942.8,179.21 5499.6,179.79 4006.3,180.31 3528,162 3419.8,157.86 3392.1,160.82 3285,145 3195.7,131.81 3174.5,122.02 \ 3087,100 3040,88.188 3029.4,80.888 2982,71 2957.4,65.865 2950.6,68.163 2926,63 2917.7,61.256 2908.8,59.016 2900.5,56.739"]; somatic -> all_candidates [_draw_="c 7 -#000000 B 10 5942.61 179.26 5519.91 179.93 4149.09 180.61 3708 162 3398.03 148.92 3317.11 141.67 3017 63 3010.75 61.36 3004.15 \ 59.27 2997.91 57.12 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2999.11 54.95 2991.69 54.9 2997.46 59.56 ", pos="e,2990.3,54.397 5942.6,179.26 5519.9,179.93 4149.1,180.61 3708,162 3398,148.92 3317.1,141.67 3017,63 3010.7,61.361 3004.1,59.271 \ 2997.9,57.122"]; somatic -> tumor_bin_level_ratios [_draw_="c 7 -#000000 B 13 5942.71 179.36 5535.35 180.34 4250.77 181.72 3836 162 3749.55 157.89 3727.87 155.89 3642 145 3421.64 117.06 3366.47 \ 108.19 3149 63 3139.88 61.1 3130.13 58.82 3120.95 56.55 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3121.56 54.18 3114.17 54.85 3120.37 58.93 ", pos="e,3112.7,54.486 5942.7,179.36 5535.3,180.34 4250.8,181.72 3836,162 3749.5,157.89 3727.9,155.89 3642,145 3421.6,117.06 3366.5,108.19 \ 3149,63 3139.9,61.104 3130.1,58.822 3120.9,56.554"]; somatic -> normal_per_base_coverage_metrics [_draw_="c 7 -#000000 B 10 5942.78 179.22 5552.65 179.7 4362.19 179.64 3976 162 3885.11 157.85 3862.16 157.21 3772 145 3593.19 120.79 3382.99 \ 76.34 3291.91 56.29 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3292.58 53.93 3285.22 54.81 3291.52 58.72 ", pos="e,3283.7,54.488 5942.8,179.22 5552.7,179.7 4362.2,179.64 3976,162 3885.1,157.85 3862.2,157.21 3772,145 3593.2,120.79 3383,76.344 \ 3291.9,56.293"]; somatic -> somatic_vep_summary [_draw_="c 7 -#000000 B 10 5942.54 178.83 5575.53 178.19 4507.9 175.22 4159 162 4045.94 157.72 4017.27 158.98 3905 145 3735.65 123.91 3537.45 \ 77.3 3453.22 56.44 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3454.05 54.12 3446.66 54.81 3452.87 58.88 ", pos="e,3445.2,54.448 5942.5,178.83 5575.5,178.19 4507.9,175.22 4159,162 4045.9,157.72 4017.3,158.98 3905,145 3735.6,123.91 3537.5,77.301 \ 3453.2,56.444"]; somatic -> small_candidates [_draw_="c 7 -#000000 B 13 5942.74 178.69 5599.7 177.68 4649.8 173.87 4337 162 4222.61 157.66 4193.77 157.66 4080 145 3859.68 120.49 3803.37 \ 115.52 3588 63 3580.73 61.23 3573 59.04 3565.71 56.82 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3566.87 54.62 3559.46 54.88 3565.42 59.3 ", pos="e,3558,54.432 5942.7,178.69 5599.7,177.68 4649.8,173.87 4337,162 4222.6,157.66 4193.8,157.66 4080,145 3859.7,120.49 3803.4,115.52 \ 3588,63 3580.7,61.226 3573,59.035 3565.7,56.823"]; somatic -> varscan_filtered_vcf [_draw_="c 7 -#000000 B 13 5942.61 178.67 5620.89 177.66 4771.77 173.92 4490 162 4387.59 157.67 4361.87 156.32 4260 145 4013.49 117.62 3950.7 \ 114.11 3708 63 3699.48 61.2 3690.38 58.92 3681.87 56.62 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3682.77 54.33 3675.37 54.82 3681.46 59.05 ", pos="e,3673.9,54.42 5942.6,178.67 5620.9,177.66 4771.8,173.92 4490,162 4387.6,157.67 4361.9,156.32 4260,145 4013.5,117.62 3950.7,114.11 \ 3708,63 3699.5,61.205 3690.4,58.924 3681.9,56.621"]; somatic -> tumor_mark_duplicates_metrics [_draw_="c 7 -#000000 B 13 5942.66 178.63 5641.23 177.57 4881.96 173.76 4628 162 4534.46 157.67 4511 155.92 4418 145 4180.39 117.11 4121.84 \ 103.19 3886 63 3873.39 60.85 3859.83 58.4 3847.13 56.03 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3847.74 53.65 3840.41 54.77 3846.84 58.47 ", pos="e,3838.9,54.496 5942.7,178.63 5641.2,177.57 4882,173.76 4628,162 4534.5,157.67 4511,155.92 4418,145 4180.4,117.11 4121.8,103.19 \ 3886,63 3873.4,60.851 3859.8,58.396 3847.1,56.032"]; somatic -> normal_per_target_coverage_metrics [_draw_="c 7 -#000000 B 10 5942.56 178.37 5664.38 176.8 5002.72 172.11 4779 162 4681.03 157.57 4656.32 157.14 4559 145 4364.08 120.68 4134.44 \ 76.14 4035.46 56.16 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4035.98 53.77 4028.63 54.78 4035.01 58.57 ", pos="e,4027.1,54.48 5942.6,178.37 5664.4,176.8 5002.7,172.11 4779,162 4681,157.57 4656.3,157.14 4559,145 4364.1,120.68 4134.4,76.139 \ 4035.5,56.163"]; somatic -> varscan_unfiltered_vcf [_draw_="c 7 -#000000 B 13 5942.64 178.3 5685.52 176.68 5106.01 172.03 4908 162 4820.67 157.58 4798.75 155.99 4712 145 4492.51 117.2 4437.6 \ 108.09 4221 63 4211.88 61.1 4202.13 58.82 4192.95 56.55 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4193.56 54.18 4186.17 54.85 4192.37 58.93 ", pos="e,4184.7,54.482 5942.6,178.3 5685.5,176.68 5106,172.03 4908,162 4820.7,157.58 4798.7,155.99 4712,145 4492.5,117.2 4437.6,108.09 \ 4221,63 4211.9,61.101 4202.1,58.818 4192.9,56.549"]; somatic -> tumor_verify_bam_id_depth [_draw_="c 7 -#000000 B 13 5942.77 178.24 5705.27 176.59 5197.43 171.98 5022 162 4944.42 157.59 4924.99 155.46 4848 145 4637.89 116.45 4586.24 \ 103.01 4378 63 4367.09 60.9 4355.39 58.52 4344.36 56.22 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4344.92 53.84 4337.57 54.8 4343.91 58.63 ", pos="e,4336.1,54.484 5942.8,178.24 5705.3,176.59 5197.4,171.98 5022,162 4944.4,157.59 4925,155.46 4848,145 4637.9,116.45 4586.2,103.01 \ 4378,63 4367.1,60.905 4355.4,58.525 4344.4,56.223"]; somatic -> normal_snv_bam_readcount_tsv [_draw_="c 7 -#000000 B 10 5942.51 178.11 5723.69 176.34 5280.88 171.66 5126 162 5055.07 157.58 5037.26 155.66 4967 145 4797.26 119.24 4597.7 \ 75.95 4510.08 56.28 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4510.8 53.93 4503.44 54.78 4509.73 58.71 ", pos="e,4502,54.453 5942.5,178.11 5723.7,176.34 5280.9,171.66 5126,162 5055.1,157.58 5037.3,155.66 4967,145 4797.3,119.24 4597.7,75.951 \ 4510.1,56.281"]; somatic -> somalier_concordance_metrics [_draw_="c 7 -#000000 B 10 5942.72 179.66 5780.1 179.78 5487.58 177.46 5238 162 5164.86 157.47 5146.3 156.97 5074 145 4927.01 120.67 4755.25 \ 76.67 4679.84 56.55 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4680.84 54.29 4673.45 54.84 4679.58 59.02 ", pos="e,4672,54.453 5942.7,179.66 5780.1,179.78 5487.6,177.46 5238,162 5164.9,157.47 5146.3,156.97 5074,145 4927,120.67 4755.3,76.674 \ 4679.8,56.555"]; somatic -> intervals_target [_draw_="c 7 -#000000 B 13 5942.57 179.39 5797.38 179.08 5551.13 176.17 5340 162 5271.74 157.42 5254.46 156.39 5187 145 5025.19 117.67 4985.03 \ 107.22 4827 63 4820.68 61.23 4813.99 59.15 4807.6 57.07 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4808.57 54.81 4801.16 54.92 4807.02 59.46 ", pos="e,4799.7,54.443 5942.6,179.39 5797.4,179.08 5551.1,176.17 5340,162 5271.7,157.42 5254.5,156.39 5187,145 5025.2,117.67 4985,107.22 \ 4827,63 4820.7,61.232 4814,59.152 4807.6,57.066"]; somatic -> normal_hs_metrics [_draw_="c 7 -#000000 B 10 5942.55 178.22 5818.56 176.82 5623.53 172.9 5455 162 5380.55 157.18 5361.57 157.38 5288 145 5149.81 121.74 4989.03 \ 77.22 4918.41 56.77 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4919.11 54.42 4911.71 54.82 4917.75 59.12 ", pos="e,4910.3,54.394 5942.5,178.22 5818.6,176.82 5623.5,172.9 5455,162 5380.5,157.18 5361.6,157.38 5288,145 5149.8,121.74 4989,77.224 \ 4918.4,56.766"]; somatic -> mutect_filtered_vcf [_draw_="c 7 -#000000 B 13 5942.81 174.61 5860.9 171.55 5751.56 167.11 5655 162 5538.03 155.81 5507.92 161.81 5392 145 5302.69 132.05 5281.58 \ 121.77 5194 100 5138.09 86.1 5073.81 68.1 5034.3 56.8 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5035.12 54.48 5027.71 54.91 5033.76 59.19 ", pos="e,5026.3,54.49 5942.8,174.61 5860.9,171.55 5751.6,167.11 5655,162 5538,155.81 5507.9,161.81 5392,145 5302.7,132.05 5281.6,121.77 \ 5194,100 5138.1,86.103 5073.8,68.1 5034.3,56.797"]; somatic -> cn_diagram [_draw_="c 7 -#000000 B 10 5942.52 172.78 5890.91 169.94 5830.55 166.25 5776 162 5488.6 139.6 5411.76 143.62 5135 63 5129.95 61.53 5124.68 \ 59.63 5119.66 57.65 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5120.86 55.49 5113.46 55.07 5118.99 60.02 ", pos="e,5112.1,54.492 5942.5,172.78 5890.9,169.94 5830.6,166.25 5776,162 5488.6,139.6 5411.8,143.62 5135,63 5130,61.529 5124.7,59.634 \ 5119.7,57.646"]; somatic -> somalier_concordance_statistics [_draw_="c 7 -#000000 B 10 5962.35 170.52 5932.18 167.95 5899.28 165.01 5869 162 5802.24 155.37 5785.29 155.35 5719 145 5551.54 118.85 5354.63 \ 75.85 5267.88 56.28 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5268.68 53.95 5261.31 54.79 5267.6 58.73 ", pos="e,5259.8,54.458 5962.3,170.52 5932.2,167.95 5899.3,165.01 5869,162 5802.2,155.37 5785.3,155.35 5719,145 5551.5,118.85 5354.6,75.849 \ 5267.9,56.277"]; somatic -> tumor_segmented_ratios [_draw_="c 7 -#000000 B 7 5993.46 170.5 5972.28 167.94 5949.21 165 5928 162 5737.76 135.06 5514.59 79.75 5425.09 56.58 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5425.71 54.21 5418.32 54.82 5424.48 58.95 ", pos="e,5416.9,54.439 5993.5,170.5 5972.3,167.94 5949.2,165 5928,162 5737.8,135.06 5514.6,79.75 5425.1,56.579"]; somatic -> cn_scatter_plot [_draw_="c 7 -#000000 B 13 6018.35 170.52 5983.18 164.23 5934.99 155.04 5893 145 5834.57 131.04 5692 82.29 5633 71 5598.34 64.37 5588.48 \ 70.51 5554 63 5547.05 61.49 5539.71 59.33 5532.87 57.05 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5533.96 54.84 5526.54 54.86 5532.35 59.47 ", pos="e,5525.1,54.364 6018.3,170.52 5983.2,164.23 5935,155.04 5893,145 5834.6,131.04 5692,82.292 5633,71 5598.3,64.366 5588.5,70.506 5554,\ 63 5547,61.486 5539.7,59.327 5532.9,57.054"]; somatic -> normal_per_target_hs_metrics [_draw_="c 7 -#000000 B 4 6040.65 170.58 5965.44 147.42 5755.55 82.8 5671.48 56.92 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5672.37 54.63 5664.96 54.91 5670.93 59.32 ", pos="e,5663.5,54.47 6040.6,170.58 5965.4,147.42 5755.5,82.805 5671.5,56.923"]; somatic -> pindel_filtered_vcf [_draw_="c 7 -#000000 B 10 6050.08 170.5 6035.89 163.72 6015.59 153.92 5998 145 5935.23 113.18 5923.07 97.83 5858 71 5853.53 69.16 5832.43 \ 62.73 5812.75 56.86 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5813.61 54.55 5806.2 54.91 5812.21 59.25 ", pos="e,5804.8,54.473 6050.1,170.5 6035.9,163.72 6015.6,153.92 5998,145 5935.2,113.18 5923.1,97.828 5858,71 5853.5,69.155 5832.4,62.73 \ 5812.8,56.856"]; somatic -> tumor_target_coverage [_draw_="c 7 -#000000 B 4 6057.43 170.68 6028.98 148.29 5950.59 86.6 5915.9 59.3 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5917.77 57.66 5910.76 55.25 5914.74 61.51 ", pos="e,5909.6,54.317 6057.4,170.68 6029,148.29 5950.6,86.598 5915.9,59.296"]; somatic -> tumor_snv_bam_readcount_tsv [_draw_="c 7 -#000000 B 4 6067.12 170.68 6064.86 149.13 6058.75 91.17 6055.74 62.51 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6058.2 62.53 6055.03 55.82 6053.33 63.04 ", pos="e,6054.9,54.317 6067.1,170.68 6064.9,149.13 6058.8,91.169 6055.7,62.509"]; somatic -> normal_antitarget_coverage [_draw_="c 7 -#000000 B 4 6077.57 170.68 6103.22 148.38 6173.71 87.11 6205.31 59.64 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6206.61 61.75 6210.29 55.31 6203.4 58.05 ", pos="e,6211.4,54.317 6077.6,170.68 6103.2,148.38 6173.7,87.111 6205.3,59.64"]; somatic -> tumor_insert_size_metrics [_draw_="c 7 -#000000 B 7 6081.98 170.58 6115.36 150.8 6202.71 100.76 6281 71 6296.2 65.22 6313.27 60.28 6328.69 56.35 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6328.92 58.82 6335.12 54.75 6327.73 54.06 ", pos="e,6336.6,54.389 6082,170.58 6115.4,150.8 6202.7,100.76 6281,71 6296.2,65.22 6313.3,60.277 6328.7,56.349"]; somatic -> normal_summary_hs_metrics [_draw_="c 7 -#000000 B 4 6097.5 170.58 6178.8 147.38 6405.96 82.54 6496.27 56.77 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6496.81 59.16 6502.87 54.88 6495.47 54.45 ", pos="e,6504.3,54.47 6097.5,170.58 6178.8,147.38 6406,82.544 6496.3,56.767"]; somatic -> tumor_alignment_summary_metrics [_draw_="c 7 -#000000 B 4 6109.03 170.58 6222.98 147.19 6543.05 81.5 6666.54 56.15 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6666.89 58.58 6673.25 54.77 6665.9 53.78 ", pos="e,6674.7,54.47 6109,170.58 6223,147.19 6543.1,81.497 6666.5,56.152"]; somatic -> somatic_final_vcf [_draw_="c 7 -#000000 B 7 6147.02 170.52 6283.84 155 6573.23 118.41 6813 63 6820.37 61.3 6828.18 59.12 6835.54 56.89 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6835.89 59.34 6841.85 54.92 6834.44 54.67 ", pos="e,6843.3,54.475 6147,170.52 6283.8,155 6573.2,118.41 6813,63 6820.4,61.298 6828.2,59.117 6835.5,56.89"]; somatic -> tumor_antitarget_coverage [_draw_="c 7 -#000000 B 10 6165.66 170.53 6195.32 167.88 6228 164.9 6258 162 6554.12 133.41 6627.8 118.86 6920 63 6930.74 60.95 6942.27 58.54 \ 6953.08 56.2 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6953.39 58.64 6959.7 54.76 6952.34 53.86 ", pos="e,6961.2,54.432 6165.7,170.53 6195.3,167.88 6228,164.9 6258,162 6554.1,133.41 6627.8,118.86 6920,63 6930.7,60.947 6942.3,58.545 \ 6953.1,56.204"]; somatic -> phase_vcf [_draw_="c 7 -#000000 B 7 6193.46 178.71 6625.11 177.62 8088.89 173.29 9298 162 9366.52 161.36 10435.2 154.06 10561.7 145.17 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 10561.83 147.62 10568.58 144.55 10561.39 142.74 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 10219.5 155.6 0 19 3 -bam ", label=bam, lp="10220,157.5", pos="e,10570,144.42 6193.5,178.71 6625.1,177.62 8088.9,173.29 9298,162 9366.5,161.36 10435,154.06 10562,145.17"]; somatic -> phase_vcf [_draw_="c 7 -#000000 B 7 6193.3 178.84 6843.48 177.94 9818.62 173.24 10230 162 10302.25 160.03 10479.67 155.84 10561.95 145.45 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 10561.97 147.92 10568.58 144.56 10561.32 143.06 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 10491.5 155.6 0 49 11 -somatic_vcf ", label=somatic_vcf, lp="10492,157.5", pos="e,10570,144.36 6193.3,178.84 6843.5,177.94 9818.6,173.24 10230,162 10302,160.03 10480,155.84 10562,145.45"]; somatic -> pvacseq [_draw_="c 7 -#000000 B 19 6193.42 178.76 6915.27 177.35 10509.24 169.92 10536 162 10543.09 159.9 10542.92 155.13 10550 153 10581.07 143.64 \ 11106.18 161.71 11134 145 11142.7 139.78 11136.87 131.07 11145 125 11173.43 103.78 11187.77 112.22 11223 108 11319.77 96.42 11565.7 \ 92.64 11743.23 91.45 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11743.13 93.9 11750.12 91.41 11743.1 89 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 11184.5 133.1 0 79 19 -detect_variants_vcf ", label=detect_variants_vcf, lp="11184,135", pos="e,11752,91.399 6193.4,178.76 6915.3,177.35 10509,169.92 10536,162 10543,159.9 10543,155.13 10550,153 10581,143.64 11106,161.71 11134,\ 145 11143,139.78 11137,131.07 11145,125 11173,103.78 11188,112.22 11223,108 11320,96.419 11566,92.639 11743,91.453"]; pvacseq -> mhc_i_filtered_epitopes [_draw_="c 7 -#000000 B 7 12090.46 80.51 12138.35 76.57 12191.61 70.95 12240 63 12250.32 61.3 12261.37 58.9 12271.57 56.44 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 12271.87 58.89 12278.07 54.82 12270.69 54.13 ", pos="e,12280,54.457 12090,80.509 12138,76.574 12192,70.948 12240,63 12250,61.305 12261,58.903 12272,56.436"]; pvacseq -> combined_ranked_epitopes [_draw_="c 7 -#000000 B 7 12134.28 83.82 12210.11 80.13 12297.91 73.81 12377 63 12389.2 61.33 12402.31 58.81 12414.29 56.22 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 12414.59 58.66 12420.89 54.75 12413.53 53.88 ", pos="e,12422,54.418 12134,83.82 12210,80.131 12298,73.814 12377,63 12389,61.332 12402,58.81 12414,56.216"]; pvacseq -> combined_filtered_epitopes [_draw_="c 7 -#000000 B 7 12134.35 88.51 12249.66 86.24 12399.23 79.8 12531 63 12543.47 61.41 12556.89 58.89 12569.11 56.26 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 12569.56 58.67 12575.87 54.77 12568.5 53.89 ", pos="e,12577,54.443 12134,88.512 12250,86.239 12399,79.797 12531,63 12543,61.41 12557,58.885 12569,56.263"]; pvacseq -> combined_all_epitopes [_draw_="c 7 -#000000 B 7 12134.19 86.97 12318.87 84.16 12585.26 77.67 12688 63 12698.46 61.51 12709.64 59.07 12719.85 56.51 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 12720.18 58.95 12726.34 54.82 12718.95 54.21 ", pos="e,12728,54.435 12134,86.966 12319,84.16 12585,77.666 12688,63 12698,61.507 12710,59.073 12720,56.506"]; pvacseq -> mhc_i_all_epitopes [_draw_="c 7 -#000000 B 10 12134.49 84.81 12265.79 81.76 12443.96 77.24 12601 72 12698.81 68.74 12724.4 78.66 12821 63 12829.77 61.58 12839.09 \ 59.28 12847.66 56.83 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 12848.16 59.24 12854.16 54.88 12846.75 54.54 ", pos="e,12856,54.45 12134,84.813 12266,81.756 12444,77.241 12601,72 12699,68.736 12724,78.66 12821,63 12830,61.578 12839,59.28 12848,56.826"]; pvacseq -> mhc_ii_all_epitopes [_draw_="c 7 -#000000 B 10 12134.41 85.2 12282.96 82.11 12494.07 77.37 12679 72 12793.24 68.68 12823.09 80.71 12936 63 12944.92 61.6 12954.39 \ 59.31 12963.11 56.86 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 12963.72 59.23 12969.74 54.91 12962.34 54.53 ", pos="e,12971,54.481 12134,85.203 12283,82.106 12494,77.374 12679,72 12793,68.68 12823,80.707 12936,63 12945,61.602 12954,59.312 12963,\ 56.859"]; pvacseq -> annotated_vcf [_draw_="c 7 -#000000 B 10 12134.49 85.75 12303.34 82.72 12556.03 77.82 12776 72 12899.13 68.74 12932.04 86.24 13053 63 13059.71 61.71 13066.74 \ 59.61 13073.26 57.31 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 13074.06 59.62 13079.76 54.88 13072.34 55.04 ", pos="e,13081,54.345 12134,85.748 12303,82.724 12556,77.818 12776,72 12899,68.743 12932,86.235 13053,63 13060,61.711 13067,59.606 13073,\ 57.31"]; pvacseq -> mhc_ii_filtered_epitopes [_draw_="c 7 -#000000 B 10 12134.33 86.58 12326.01 83.92 12629.47 79.06 12892 72 13003.59 69 13032.37 77.9 13143 63 13154.16 61.5 13166.12 \ 59.03 13177.02 56.44 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 13177.44 58.86 13183.65 54.8 13176.27 54.1 ", pos="e,13185,54.441 12134,86.579 12326,83.916 12629,79.058 12892,72 13004,69 13032,77.897 13143,63 13154,61.498 13166,59.031 13177,56.436"]; pvacseq -> annotated_tsv [_draw_="c 7 -#000000 B 10 12134.25 86.61 12341.98 83.83 12683.58 78.76 12978 72 13113.58 68.89 13149.78 88.38 13283 63 13289.71 61.72 13296.74 \ 59.62 13303.26 57.32 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 13304.06 59.64 13309.76 54.89 13302.35 55.05 ", pos="e,13311,54.359 12134,86.607 12342,83.833 12684,78.762 12978,72 13114,68.886 13150,88.383 13283,63 13290,61.721 13297,59.62 13303,\ 57.324"]; pvacseq -> mhc_i_ranked_epitopes [_draw_="c 7 -#000000 B 4 11961.18 80.5 11974.91 74.09 11993.95 65.19 12009.25 58.04 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 12010.19 60.3 12015.49 55.12 12008.11 55.86 ", pos="e,12017,54.478 11961,80.505 11975,74.085 11994,65.188 12009,58.036"]; pvacseq -> mhc_ii_ranked_epitopes [_draw_="c 7 -#000000 B 7 12000.59 80.54 12030.62 75.87 12067.89 69.68 12101 63 12110.71 61.04 12121.1 58.7 12130.86 56.38 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 12131.17 58.83 12137.41 54.81 12130.03 54.06 ", pos="e,12139,54.452 12001,80.542 12031,75.875 12068,69.679 12101,63 12111,61.042 12121,58.696 12131,56.381"]; extract_alleles -> allele_string [_draw_="c 7 -#000000 B 13 10515.23 125.87 10512.21 120.53 10509.75 113.54 10513 108 10525.88 86.03 10538.41 86.62 10563 80 10629.79 62.02 \ 11740.18 76.63 11808 63 11813.8 61.83 11819.82 59.88 11825.43 57.71 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11826.37 59.98 11831.89 55.02 11824.48 55.45 ", pos="e,11833,54.438 10515,125.87 10512,120.53 10510,113.54 10513,108 10526,86.027 10538,86.621 10563,80 10630,62.017 11740,76.629 11808,\ 63 11814,61.834 11820,59.884 11825,57.713"]; extract_alleles -> pvacseq [_draw_="c 7 -#000000 B 7 10516.51 125.62 10514.12 119.9 10512.51 112.55 10517 108 10527.63 97.24 11353.5 93 11743.38 91.6 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11743.15 94.05 11750.14 91.57 11743.13 89.15 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 10531 110.6 0 28 7 -alleles ", label=alleles, lp="10531,112.5", pos="e,11752,91.568 10517,125.62 10514,119.9 10513,112.55 10517,108 10528,97.242 11354,93.001 11743,91.597"]; default1 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 10642 125.5 10642 144.5 10710 144.5 10710 125.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 10676 132.5 0 52 8 -\"NORMAL\" ", fillcolor="#D5AEFC", height=0.27778, label="\"NORMAL\"", pos="10676,135", rects="10642,125.5,10710,144.5", width=0.94444]; default1 -> pvacseq [_draw_="c 7 -#000000 B 7 10672.83 125.6 10671.27 119.86 10670.56 112.5 10675 108 10684.25 98.62 11388.69 93.76 11743.46 91.91 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11743.27 94.36 11750.26 91.87 11743.24 89.46 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 10720 110.6 0 90 18 -normal_sample_name ", label=normal_sample_name, lp="10720,112.5", pos="e,11752,91.866 10673,125.6 10671,119.86 10671,112.5 10675,108 10684,98.625 11389,93.765 11743,91.91"]; default2 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 10807 125.5 10807 144.5 10869 144.5 10869 125.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 10838 132.5 0 46 7 -\"TUMOR\" ", fillcolor="#D5AEFC", height=0.27778, label="\"TUMOR\"", pos="10838,135", rects="10807,125.5,10869,144.5", width=0.86111]; default2 -> pvacseq [_draw_="c 7 -#000000 B 7 10831.7 125.72 10828.19 120.05 10825.36 112.71 10830 108 10845.78 91.98 11427.18 90.27 11743.22 90.53 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 11743.05 92.98 11750.05 90.53 11743.05 88.08 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 10859 110.6 0 58 11 -sample_name ", label=sample_name, lp="10859,112.5", pos="e,11752,90.536 10832,125.72 10828,120.05 10825,112.71 10830,108 10846,91.98 11427,90.269 11743,90.528"]; }