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		cpgs	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 294.5 35.5 294.5 54.5 333.5 54.5 333.5 35.5 ",
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		cram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 337.5 35.5 337.5 54.5 378.5 54.5 378.5 35.5 ",
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	vcf2bed	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 7 125.5 7 144.5 389 144.5 389 125.5 ",
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		pos="198,135",
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		width=5.3056];
	reference_index -> vcf2bed	[_draw_="c 7 -#000000 B 10 214.42 313.73 212.65 303.67 210 286.16 210 271 210 271 210 271 210 179 210 169.89 207.47 160.09 204.74 152.14 ",
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	bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 523.5 260.5 523.5 279.5 766.5 279.5 766.5 260.5 ",
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		pos="645,270",
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		width=3.375];
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	reference_index -> bam_to_cram	[_draw_="c 7 -#000000 B 4 223.98 313.6 246.19 290.23 308.9 224.25 336.58 195.12 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 310 245.6 0 40 9 -reference ",
		label=reference,
		lp="310,247.5",
		pos="e,342.23,189.18 223.98,313.6 246.19,290.23 308.9,224.25 336.58,195.12"];
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		height=0.27778,
		label="Biscuit pileup",
		pos="476,180",
		rects="434.5,170.5,517.5,189.5",
		width=1.1528];
	reference_index -> pileup	[_draw_="c 7 -#000000 B 7 241.47 313.56 302.21 293.34 451.1 243.21 459 235 464.2 229.6 469.24 211.45 472.46 197.67 ",
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		label=reference,
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		pos="e,474.3,189.43 241.47,313.56 302.21,293.34 451.1,243.21 459,235 464.2,229.6 469.24,211.45 472.46,197.67"];
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		fillcolor="#F3CEA1",
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		label="Bisulfite QC tools",
		pos="483,135",
		rects="432.5,125.5,533.5,144.5",
		width=1.4028];
	reference_index -> bisulfite_qc	[_draw_="c 7 -#000000 B 13 230.34 313.66 252.27 300.81 295.36 275.23 331 252 371.39 225.68 385.87 224.05 420 190 427.68 182.34 426.31 177.66 \
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		label=reference,
		lp="411,225",
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	QCannotation -> bisulfite_qc	[_draw_="c 7 -#000000 B 10 1331.15 313.55 1304.79 303.45 1266 286.05 1266 271 1266 271 1266 271 1266 179 1266 142.75 723.98 137.06 541.87 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1294.5 223.1 0 57 12 -QCannotation ",
		label=QCannotation,
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	trimming_adapters -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 858.93 313.62 844.81 305.64 822.15 293.97 801 288 791.17 285.23 780.88 282.9 770.47 280.96 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 843.5 290.6 0 37 8 -adapters ",
		label=adapters,
		lp="843.5,292.5",
		pos="e,762.1,279.47 858.93,313.62 844.81,305.64 822.15,293.97 801,288 791.17,285.23 780.88,282.9 770.47,280.96"];
	trimming_adapter_trim_end -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 978.78 313.55 949.44 305.69 903.51 294.26 863 288 834.54 283.6 803.8 280.32 774.63 277.87 ",
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		label=adapter_trim_end,
		lp="943,292.5",
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	trimming_min_readlength -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 13 372.5 313.57 385.68 310.5 400.98 307.23 415 305 433.3 302.08 481.48 305.39 498 297 502.77 294.58 501.26 290.49 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 530.05 283.36 536.52 279.73 529.2 278.54 ",
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		label=min_readlength,
		lp="538,292.5",
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	trimming_max_uncalled -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 10 522.89 313.54 538.38 309.56 555.9 304.1 571 297 577.36 294.01 577.64 290.98 584 288 588.88 285.71 594.13 283.67 \
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		label=max_uncalled,
		lp="612.5,292.5",
		pos="e,607.19,279.42 522.89,313.54 538.38,309.56 555.9,304.1 571,297 577.36,294.01 577.64,290.98 584,288 588.88,285.71 594.13,283.67 \
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	trimming_adapter_min_overlap -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 4 639.99 313.58 640.82 306.52 642.03 296.24 643.05 287.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 645.47 288.01 643.85 280.77 640.6 287.43 ",
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		label=adapter_min_overlap,
		lp="685,292.5",
		pos="e,644.03,279.26 639.99,313.58 640.82,306.52 642.03,296.24 643.05,287.55"];
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		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 198 87.5 0 152 29 -bedGraph to bigwig conversion ",
		height=0.27778,
		label="bedGraph to bigwig conversion",
		pos="198,90",
		rects="114,80.5,282,99.5",
		width=2.3333];
	reference_sizes -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 10 71.7 319.94 38.64 315.67 0 303.7 0 271 0 271 0 271 0 134 0 110.46 54.12 99.78 105.77 94.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 105.76 97.41 112.52 94.36 105.33 92.53 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 32.5 200.6 0 65 15 -reference_sizes ",
		label=reference_sizes,
		lp="32.5,202.5",
		pos="e,114.03,94.223 71.702,319.94 38.644,315.67 0,303.7 0,271 0,271 0,271 0,134 0,110.46 54.12,99.781 105.77,94.949"];
	read_group_id -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 763.14 313.64 755.27 305.79 742.41 294.31 729 288 723.94 285.61 718.54 283.56 713.03 281.8 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 771 290.6 0 58 13 -read_group_id ",
		label=read_group_id,
		lp="771,292.5",
		pos="e,704.9,279.42 763.14,313.64 755.27,305.79 742.41,294.31 729,288 723.94,285.61 718.54,283.56 713.03,281.8"];
	instrument_data_bams -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 1215.42 313.52 1203.57 310.41 1189.72 307.13 1177 305 1040.99 282.28 883.09 274.49 774.86 271.95 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1128.5 290.6 0 19 3 -bam ",
		label=bam,
		lp="1128.5,292.5",
		pos="e,766.5,271.76 1215.4,313.52 1203.6,310.41 1189.7,307.13 1177,305 1041,282.28 883.09,274.49 774.86,271.95"];
	vcf2bed -> cpgs	[_draw_="c 7 -#000000 B 7 233.55 125.6 250 120.34 268.96 112.19 283 100 289.35 94.49 299.42 75.75 306.35 61.89 ",
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		pos="e,310.02,54.426 233.55,125.6 250,120.34 268.96,112.19 283,100 289.35,94.49 299.42,75.753 306.35,61.889"];
	vcf2bed -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 4 198 125.71 198 120.59 198 113.85 198 107.67 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 218 110.6 0 40 8 -bedgraph ",
		label=bedgraph,
		lp="218,112.5",
		pos="e,198,99.265 198,125.71 198,120.59 198,113.85 198,107.67"];
	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 476 215.5 476 234.5 586 234.5 586 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 531 222.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="531,225",
		rects="476,215.5,586,234.5",
		width=1.5278];
	bam_to_trimmed_fastq_and_biscuit_alignments -> merge	[_draw_="c 7 -#000000 B 4 622.48 260.5 604.99 253.91 580.57 244.7 561.36 237.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 562.31 235.19 554.89 235.01 560.58 239.77 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 609.5 245.6 0 23 4 -bams ",
		label=bams,
		lp="609.5,247.5",
		pos="e,553.48,234.48 622.48,260.5 604.99,253.91 580.57,244.7 561.36,237.45"];
	index_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 298.5 80.5 298.5 99.5 417.5 99.5 417.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 358 87.5 0 103 19 -samtools index cram ",
		height=0.27778,
		label="samtools index cram",
		pos="358,90",
		rects="298.5,80.5,417.5,99.5",
		width=1.6528];
	bam_to_cram -> index_cram	[_draw_="c 7 -#000000 B 13 368.62 170.63 372.69 168.24 376.75 165.35 380 162 385.96 155.87 386.94 153.3 389 145 391.14 136.37 392.21 133.29 \
389 125 386.08 117.45 380.61 110.55 375.07 104.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 377.05 103.47 370.26 100.49 373.71 107.05 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 401.5 133.1 0 21 4 -cram ",
		label=cram,
		lp="401.5,135",
		pos="e,369.15,99.46 368.62,170.63 372.69,168.24 376.75,165.35 380,162 385.96,155.87 386.94,153.3 389,145 391.14,136.37 392.21,133.29 \
389,125 386.08,117.45 380.61,110.55 375.07,104.97"];
	pileup -> vcf	[_draw_="c 7 -#000000 B 10 460.25 170.65 450.63 164.75 438.9 155.94 432 145 416.24 120 428.43 107.65 418 80 415.6 73.65 412.17 67.05 408.87 \
61.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 411.1 60.32 405.37 55.61 406.91 62.87 ",
		pos="e,404.58,54.322 460.25,170.65 450.63,164.75 438.9,155.94 432,145 416.24,120 428.43,107.65 418,80 415.6,73.65 412.17,67.052 408.87,\
61.378"];
	pileup -> vcf2bed	[_draw_="c 7 -#000000 B 7 434.73 172.06 430.44 171.35 426.13 170.66 422 170 368.61 161.5 307.98 152.33 263.27 145.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 263.9 143.27 256.61 144.66 263.18 148.11 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 372.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="372.5,157.5",
		pos="e,255.12,144.44 434.73,172.06 430.44,171.35 426.13,170.66 422,170 368.61,161.5 307.98,152.33 263.27,145.65"];
	pileup -> bisulfite_qc	[_draw_="c 7 -#000000 B 4 477.35 170.71 478.18 165.59 479.28 158.85 480.29 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 482.7 153.06 481.41 145.76 477.87 152.27 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 486.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="486.5,157.5",
		pos="e,481.65,144.27 477.35,170.71 478.18,165.59 479.28,158.85 480.29,152.67"];
	index_cram -> cram	[_draw_="c 7 -#000000 B 4 358 80.71 358 75.59 358 68.85 358 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 360.45 62.78 358 55.78 355.55 62.78 ",
		pos="e,358,54.265 358,80.709 358,75.593 358,68.848 358,62.666"];
	bedgraph_to_bigwig -> cpg_bigwig	[_draw_="c 7 -#000000 B 4 209.26 80.5 217.22 74.5 228.06 66.32 237.19 59.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 238.44 61.56 242.55 55.39 235.49 57.65 ",
		pos="e,243.76,54.478 209.26,80.505 217.22,74.497 228.06,66.32 237.19,59.435"];
	bisulfite_qc -> gathered_directory	[_draw_="c 7 -#000000 B 4 482.14 125.56 480.66 111.14 477.63 81.48 475.71 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 478.15 62.5 475 55.79 473.28 63 ",
		pos="e,474.85,54.284 482.14,125.56 480.66,111.14 477.63,81.476 475.71,62.727"];
	merge -> bam_to_cram	[_draw_="c 7 -#000000 B 4 495.24 215.5 466.11 208.58 424.86 198.79 393.76 191.4 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 394.53 189.06 387.16 189.83 393.4 193.83 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 465.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="465.5,202.5",
		pos="e,385.69,189.48 495.24,215.5 466.11,208.58 424.86,198.79 393.76,191.4"];
	merge -> pileup	[_draw_="c 7 -#000000 B 7 520.32 215.54 513.87 210.45 505.48 203.83 498 198 496.52 196.84 494.97 195.64 493.42 194.44 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 494.99 192.55 487.95 190.21 491.99 196.43 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 517.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="517.5,202.5",
		pos="e,486.76,189.28 520.32,215.54 513.87,210.45 505.48,203.83 498,198 496.52,196.84 494.97,195.64 493.42,194.44"];
	merge -> bisulfite_qc	[_draw_="c 7 -#000000 B 7 530.9 215.76 530.42 204.66 528.36 184.62 520 170 515.52 162.16 508.61 155.1 501.98 149.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 503.72 147.73 496.71 145.29 500.67 151.57 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 536.5 178.1 0 19 3 -bam ",
		label=bam,
		lp="536.5,180",
		pos="e,495.53,144.35 530.9,215.76 530.42,204.66 528.36,184.62 520,170 515.52,162.16 508.61,155.1 501.98,149.48"];
}