digraph workflow {
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			pos="310.5,45",
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		chart	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1101 35.5 1101 54.5 1142 54.5 1142 35.5 ",
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	gene_transcript_lookup_table -> transcript_to_gene	[_draw_="c 7 -#000000 B 10 342.5 366.7 342.5 356.6 342.5 339.05 342.5 324 342.5 324 342.5 324 342.5 142 342.5 133.31 342.5 123.63 342.5 115.65 ",
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		label=gene_transcript_lookup_table,
		lp="403,233",
		pos="e,342.5,107.24 342.5,366.7 342.5,356.6 342.5,339.05 342.5,324 342.5,324 342.5,324 342.5,142 342.5,133.31 342.5,123.63 342.5,115.65"];
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	refFlat -> generate_qc_metrics	[_draw_="c 7 -#000000 B 25 702.11 366.61 707.06 363.58 712.9 360.34 718.5 358 731.23 352.68 735.88 355.59 748.5 350 809.93 322.79 812.84 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1055 231.1 0 27 7 -refFlat ",
		label=refFlat,
		lp="1055,233",
		pos="e,1074.9,107.4 702.11,366.61 707.06,363.58 712.9,360.34 718.5,358 731.23,352.68 735.88,355.59 748.5,350 809.93,322.79 812.84,292.25 \
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		height=0.27778,
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		rects="1442.5,88.5,1692.5,107.5",
		width=3.4722];
	star_fusion_genome_dir -> star_fusion_detect	[_draw_="c 7 -#000000 B 13 2171.23 366.57 2158.92 363.5 2144.62 360.24 2131.5 358 2095.16 351.81 1801.5 360.86 1801.5 324 1801.5 324 1801.5 \
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		label=star_fusion_genome_dir,
		lp="1850,233",
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1801.5,232 1801.5,156.45 1708.2,123.28 1639.4,109.09"];
	cgpbigwig_bamcoverage	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 840.5 88.5 840.5 107.5 1040.5 107.5 1040.5 88.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 940.5 95.5 0 184 34 -cgpBigWig Converting BAM to BigWig ",
		height=0.27778,
		label="cgpBigWig Converting BAM to BigWig",
		pos="940.5,98",
		rects="840.5,88.5,1040.5,107.5",
		width=2.7778];
	reference_fasta -> cgpbigwig_bamcoverage	[_draw_="c 7 -#000000 B 16 572.99 366.6 603.41 339.74 697.51 257.37 714.5 251 728.6 245.71 973.75 252.42 985.5 243 996.77 233.96 993.5 225.94 \
993.5 211.5 993.5 211.5 993.5 211.5 993.5 142 993.5 128.36 982.78 118.29 970.99 111.34 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 972.26 109.24 964.93 108.12 969.96 113.57 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1013.5 231.1 0 40 9 -reference ",
		label=reference,
		lp="1013.5,233",
		pos="e,963.59,107.41 572.99,366.6 603.41,339.74 697.51,257.37 714.5,251 728.6,245.71 973.75,252.42 985.5,243 996.77,233.96 993.5,225.94 \
993.5,211.5 993.5,211.5 993.5,211.5 993.5,142 993.5,128.36 982.78,118.29 970.99,111.34"];
	bam_to_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 418.5 88.5 418.5 107.5 558.5 107.5 558.5 88.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 488.5 95.5 0 124 22 -BAM to CRAM conversion ",
		height=0.27778,
		label="BAM to CRAM conversion",
		pos="488.5,98",
		rects="418.5,88.5,558.5,107.5",
		width=1.9444];
	reference_fasta -> bam_to_cram	[_draw_="c 7 -#000000 B 13 559.95 366.51 556.1 356.52 550.5 339.35 550.5 324 550.5 324 550.5 324 550.5 254.5 550.5 203.19 513.58 201.02 495.5 \
153 490.97 140.97 489.28 126.49 488.69 115.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 491.15 115.76 488.46 108.85 486.25 115.92 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 569.5 231.1 0 40 9 -reference ",
		label=reference,
		lp="569.5,233",
		pos="e,488.41,107.33 559.95,366.51 556.1,356.52 550.5,339.35 550.5,324 550.5,324 550.5,324 550.5,254.5 550.5,203.19 513.58,201.02 495.5,\
153 490.97,140.97 489.28,126.49 488.69,115.56"];
	ribosomal_intervals -> generate_qc_metrics	[_draw_="c 7 -#000000 B 16 862.89 366.57 861.9 345.86 862.61 292.39 893.5 268 911.13 254.08 1076.78 272.41 1095.5 260 1104.96 253.73 1111.5 \
212.38 1111.5 211.5 1111.5 211.5 1111.5 211.5 1111.5 142 1111.5 133.31 1111.5 123.63 1111.5 115.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1113.95 115.76 1111.5 108.76 1109.05 115.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1148.5 231.1 0 80 19 -ribosomal_intervals ",
		label=ribosomal_intervals,
		lp="1148.5,233",
		pos="e,1111.5,107.24 862.89,366.57 861.9,345.86 862.61,292.39 893.5,268 911.13,254.08 1076.8,272.41 1095.5,260 1105,253.73 1111.5,212.38 \
1111.5,211.5 1111.5,211.5 1111.5,211.5 1111.5,142 1111.5,133.31 1111.5,123.63 1111.5,115.65"];
	bam_to_trimmed_fastq	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 1228 313.5 1228 332.5 1357 332.5 1357 313.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1292.5 320.5 0 113 21 -bam to trimmed fastqs ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="bam to trimmed fastqs",
		pos="1292.5,323",
		rects="1228,313.5,1357,332.5",
		width=1.7917];
	trimming_adapter_min_overlap -> bam_to_trimmed_fastq	[_draw_="c 7 -#000000 B 4 1274.97 366.58 1277.93 359.37 1282.29 348.81 1285.91 340 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1288.12 341.07 1288.52 333.66 1283.59 339.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1327.5 343.6 0 86 19 -adapter_min_overlap ",
		label=adapter_min_overlap,
		lp="1327.5,345.5",
		pos="e,1289.1,332.26 1275,366.58 1277.9,359.37 1282.3,348.81 1285.9,340"];
	trimming_adapter_trim_end -> bam_to_trimmed_fastq	[_draw_="c 7 -#000000 B 10 1415.67 366.59 1405.07 362.18 1392.33 356.37 1381.5 350 1375.75 346.62 1375.56 343.78 1369.5 341 1364.4 338.66 \
1358.96 336.63 1353.42 334.88 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1354.12 332.53 1346.71 332.92 1352.75 337.23 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1417.5 343.6 0 72 16 -adapter_trim_end ",
		label=adapter_trim_end,
		lp="1417.5,345.5",
		pos="e,1345.3,332.5 1415.7,366.59 1405.1,362.18 1392.3,356.37 1381.5,350 1375.8,346.62 1375.6,343.78 1369.5,341 1364.4,338.66 1359,336.63 \
1353.4,334.88"];
	stringtie	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 633.5 88.5 633.5 107.5 693.5 107.5 693.5 88.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 663.5 95.5 0 44 9 -StringTie ",
		height=0.27778,
		label=StringTie,
		pos="663.5,98",
		rects="633.5,88.5,693.5,107.5",
		width=0.83333];
	strand -> stringtie	[_draw_="c 7 -#000000 B 10 637.5 366.7 637.5 356.6 637.5 339.05 637.5 324 637.5 324 637.5 324 637.5 142 637.5 131.58 643.16 121.52 649.2 \
113.76 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 651.03 115.39 653.71 108.48 647.3 112.21 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 651 231.1 0 27 6 -strand ",
		label=strand,
		lp="651,233",
		pos="e,654.7,107.33 637.5,366.7 637.5,356.6 637.5,339.05 637.5,324 637.5,324 637.5,324 637.5,142 637.5,131.58 643.16,121.52 649.2,113.76"];
	kallisto	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 645 133.5 645 152.5 734 152.5 734 133.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 689.5 140.5 0 73 15 -Kallisto: Quant ",
		height=0.27778,
		label="Kallisto: Quant",
		pos="689.5,143",
		rects="645,133.5,734,152.5",
		width=1.2361];
	strand -> kallisto	[_draw_="c 7 -#000000 B 13 647.52 366.74 657.55 357.47 671.5 341.45 671.5 324 671.5 324 671.5 324 671.5 187 671.5 175.03 673.64 171.93 678.5 \
161 678.71 160.54 678.92 160.07 679.15 159.61 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 681.21 160.95 682.6 153.66 676.97 158.49 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 685 253.6 0 27 6 -strand ",
		label=strand,
		lp="685,255.5",
		pos="e,683.36,152.35 647.52,366.74 657.55,357.47 671.5,341.45 671.5,324 671.5,324 671.5,324 671.5,187 671.5,175.03 673.64,171.93 678.5,\
161 678.71,160.54 678.92,160.07 679.15,159.61"];
	strand -> generate_qc_metrics	[_draw_="c 7 -#000000 B 22 650.39 366.65 655.06 363.77 660.44 360.6 665.5 358 755.79 311.54 778.05 296.55 875.5 268 919.6 255.08 931.91 256.79 \
977.5 251 997.64 248.44 1053.04 256.15 1068.5 243 1074 238.32 1076.5 218.72 1076.5 211.5 1076.5 211.5 1076.5 211.5 1076.5 142 1076.5 \
130.34 1084.34 120.09 1092.59 112.52 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1093.9 114.62 1097.7 108.25 1090.76 110.86 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1088 231.1 0 27 6 -strand ",
		label=strand,
		lp="1088,233",
		pos="e,1098.9,107.28 650.39,366.65 655.06,363.77 660.44,360.6 665.5,358 755.79,311.54 778.05,296.55 875.5,268 919.6,255.08 931.91,256.79 \
977.5,251 997.64,248.44 1053,256.15 1068.5,243 1074,238.32 1076.5,218.72 1076.5,211.5 1076.5,211.5 1076.5,211.5 1076.5,142 1076.5,\
130.34 1084.3,120.09 1092.6,112.52"];
	sample_name -> stringtie	[_draw_="c 7 -#000000 B 16 473.6 366.56 478.04 356.62 484.5 339.51 484.5 324 484.5 324 484.5 324 484.5 254.5 484.5 240.5 483.08 236.93 484.5 \
223 485.73 210.92 497.52 124.17 506.5 116 508.7 114 579.8 106.93 625.56 102.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 625.54 105.02 632.28 101.92 625.08 100.14 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 513.5 231.1 0 58 11 -sample_name ",
		label=sample_name,
		lp="513.5,233",
		pos="e,633.78,101.77 473.6,366.56 478.04,356.62 484.5,339.51 484.5,324 484.5,324 484.5,324 484.5,254.5 484.5,240.5 483.08,236.93 484.5,\
223 485.73,210.92 497.52,124.17 506.5,116 508.7,114 579.8,106.93 625.56,102.56"];
	trimming_adapters -> bam_to_trimmed_fastq	[_draw_="c 7 -#000000 B 13 1546.96 366.57 1536.87 363.57 1525.22 360.36 1514.5 358 1491.66 352.97 1484.05 359.06 1462.5 350 1456.35 347.42 \
1456.72 343.39 1450.5 341 1415.89 327.71 1402.74 336.05 1365.17 333.25 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1365.47 330.81 1358.27 332.61 1365.02 335.69 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1481 343.6 0 37 8 -adapters ",
		label=adapters,
		lp="1481,345.5",
		pos="e,1356.8,332.47 1547,366.57 1536.9,363.57 1525.2,360.36 1514.5,358 1491.7,352.97 1484.1,359.06 1462.5,350 1456.4,347.42 1456.7,343.39 \
1450.5,341 1415.9,327.71 1402.7,336.05 1365.2,333.25"];
	gtf_file -> stringtie	[_draw_="c 7 -#000000 B 25 1010.9 366.59 1005.95 363.56 1000.11 360.32 994.5 358 953.76 341.14 937.05 354.41 898.5 333 877.61 321.4 879.29 \
309.39 859.5 296 819.8 269.14 807.65 263.92 761.5 251 746.64 246.84 702.77 254.53 692.5 243 686.59 236.36 690.13 231.57 692.5 223 \
704.28 180.46 758.03 170.35 734.5 133 727.02 121.13 714.12 113.31 701.35 108.2 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 702.3 105.94 694.88 105.87 700.64 110.55 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 737 231.1 0 89 20 -reference_annotation ",
		label=reference_annotation,
		lp="737,233",
		pos="e,693.46,105.36 1010.9,366.59 1005.9,363.56 1000.1,360.32 994.5,358 953.76,341.14 937.05,354.41 898.5,333 877.61,321.4 879.29,309.39 \
859.5,296 819.8,269.14 807.65,263.92 761.5,251 746.64,246.84 702.77,254.53 692.5,243 686.59,236.36 690.13,231.57 692.5,223 704.28,\
180.46 758.03,170.35 734.5,133 727.02,121.13 714.12,113.31 701.35,108.2"];
	strandedness_check	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 894 268.5 894 287.5 1271 287.5 1271 268.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1082.5 275.5 0 361 67 -runs how_are_we_stranded_here to determine RNAseq data strandedness ",
		height=0.27778,
		label="runs how_are_we_stranded_here to determine RNAseq data strandedness",
		pos="1082.5,278",
		rects="894,268.5,1271,287.5",
		width=5.2361];
	gtf_file -> strandedness_check	[_draw_="c 7 -#000000 B 4 1028.53 366.82 1038.36 350.81 1060.28 315.15 1072.96 294.53 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1074.94 295.97 1076.52 288.73 1070.77 293.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1074.5 321.1 0 28 8 -gtf_file ",
		label=gtf_file,
		lp="1074.5,323",
		pos="e,1077.3,287.44 1028.5,366.82 1038.4,350.81 1060.3,315.15 1073,294.53"];
	star_align_fusion	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1300 268.5 1300 287.5 1485 287.5 1485 268.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1392.5 275.5 0 169 34 -STAR: align reads to transcriptome ",
		height=0.27778,
		label="STAR: align reads to transcriptome",
		pos="1392.5,278",
		rects="1300,268.5,1485,287.5",
		width=2.5694];
	gtf_file -> star_align_fusion	[_draw_="c 7 -#000000 B 10 1034.74 366.62 1039.88 363.27 1046.21 359.79 1052.5 358 1068.85 353.33 1344.23 359.25 1358.5 350 1377.25 337.84 \
1385.92 312.25 1389.73 295.35 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1392.05 296.25 1391.02 288.9 1387.25 295.29 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1397.5 321.1 0 28 8 -gtf_file ",
		label=gtf_file,
		lp="1397.5,323",
		pos="e,1391.3,287.42 1034.7,366.62 1039.9,363.27 1046.2,359.79 1052.5,358 1068.9,353.33 1344.2,359.25 1358.5,350 1377.2,337.84 1385.9,\
312.25 1389.7,295.35"];
	outsam_attrrg_line -> star_align_fusion	[_draw_="c 7 -#000000 B 16 2052.54 366.52 2042.2 363.24 2029.89 359.85 2018.5 358 1921.48 342.28 1894.98 362.56 1797.5 350 1763.17 345.58 \
1754.27 344.14 1721.5 333 1701.54 326.22 1698.77 318.76 1678.5 313 1618.34 295.91 1548.69 287.4 1493.19 283.17 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1493.43 280.73 1486.27 282.66 1493.07 285.62 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1759.5 321.1 0 76 18 -outsam_attrrg_line ",
		label=outsam_attrrg_line,
		lp="1759.5,323",
		pos="e,1484.8,282.55 2052.5,366.52 2042.2,363.24 2029.9,359.85 2018.5,358 1921.5,342.28 1895,362.56 1797.5,350 1763.2,345.58 1754.3,344.14 \
1721.5,333 1701.5,326.22 1698.8,318.76 1678.5,313 1618.3,295.91 1548.7,287.4 1493.2,283.17"];
	trimming_max_uncalled -> bam_to_trimmed_fastq	[_draw_="c 7 -#000000 B 13 1670.32 366.58 1657.79 363.4 1643.03 360.05 1629.5 358 1602.86 353.96 1533.77 359.36 1508.5 350 1502.25 347.68 \
1502.76 343.29 1496.5 341 1470.38 331.42 1402.56 335.15 1364.84 333.11 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1365.06 330.67 1357.9 332.6 1364.7 335.55 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1537 343.6 0 57 12 -max_uncalled ",
		label=max_uncalled,
		lp="1537,345.5",
		pos="e,1356.4,332.49 1670.3,366.58 1657.8,363.4 1643,360.05 1629.5,358 1602.9,353.96 1533.8,359.36 1508.5,350 1502.2,347.68 1502.8,343.29 \
1496.5,341 1470.4,331.42 1402.6,335.15 1364.8,333.11"];
	trimming_min_readlength -> bam_to_trimmed_fastq	[_draw_="c 7 -#000000 B 13 1811.98 366.52 1798.66 363.28 1782.93 359.92 1768.5 358 1725.73 352.32 1615.14 364.49 1574.5 350 1568.22 347.76 \
1568.78 343.23 1562.5 341 1543 334.07 1406.42 334.74 1363.94 332.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1364.29 330.52 1357.16 332.56 1364 335.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1606.5 343.6 0 64 14 -min_readlength ",
		label=min_readlength,
		lp="1606.5,345.5",
		pos="e,1355.6,332.47 1812,366.52 1798.7,363.28 1782.9,359.92 1768.5,358 1725.7,352.32 1615.1,364.49 1574.5,350 1568.2,347.76 1568.8,343.23 \
1562.5,341 1543,334.07 1406.4,334.74 1363.9,332.95"];
	star_genome_dir -> star_align_fusion	[_draw_="c 7 -#000000 B 10 1946.66 366.53 1937.22 363.25 1925.97 359.85 1915.5 358 1827.46 342.43 1803.17 361.45 1714.5 350 1610.39 336.56 \
1490.21 305.94 1430.4 289.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1431.23 287.34 1423.83 287.85 1429.94 292.07 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1643.5 321.1 0 68 15 -star_genome_dir ",
		label=star_genome_dir,
		lp="1643.5,323",
		pos="e,1422.4,287.45 1946.7,366.53 1937.2,363.25 1926,359.85 1915.5,358 1827.5,342.43 1803.2,361.45 1714.5,350 1610.4,336.56 1490.2,305.94 \
1430.4,289.65"];
	cdna_fasta -> strandedness_check	[_draw_="c 7 -#000000 B 7 963.35 366.66 969.77 353.59 983.81 328.21 1002.5 313 1014.75 303.03 1030.34 295.53 1044.51 290.15 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1045.03 292.57 1050.78 287.89 1043.36 287.96 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1025.5 321.1 0 46 10 -cdna_fasta ",
		label=cdna_fasta,
		lp="1025.5,323",
		pos="e,1052.2,287.38 963.35,366.66 969.77,353.59 983.81,328.21 1002.5,313 1014.7,303.03 1030.3,295.53 1044.5,290.15"];
	kallisto_index -> kallisto	[_draw_="c 7 -#000000 B 10 757.87 366.76 750.89 345.79 730.3 289.35 699.5 251 695.94 246.56 691.97 248.13 689.5 243 676.72 216.42 681.08 \
180.99 685.33 160.52 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 687.66 161.33 686.83 153.96 682.88 160.25 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 733 253.6 0 55 14 -kallisto_index ",
		label=kallisto_index,
		lp="733,255.5",
		pos="e,687.16,152.49 757.87,366.76 750.89,345.79 730.3,289.35 699.5,251 695.94,246.56 691.97,248.13 689.5,243 676.72,216.42 681.08,180.99 \
685.33,160.52"];
	kallisto_index -> strandedness_check	[_draw_="c 7 -#000000 B 13 780.37 366.65 788.37 363.55 797.76 360.25 806.5 358 829.57 352.06 836.92 357.59 859.5 350 892.12 339.04 895.26 \
325.03 927.5 313 956.28 302.26 989.39 294.43 1017.6 289.01 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1017.89 291.45 1024.32 287.75 1016.98 286.63 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 955 321.1 0 55 14 -kallisto_index ",
		label=kallisto_index,
		lp="955,323",
		pos="e,1025.8,287.47 780.37,366.65 788.37,363.55 797.76,360.25 806.5,358 829.57,352.06 836.92,357.59 859.5,350 892.12,339.04 895.26,325.03 \
927.5,313 956.28,302.26 989.39,294.43 1017.6,289.01"];
	instrument_data_bams -> bam_to_trimmed_fastq	[_draw_="c 7 -#000000 B 4 1146.4 366.58 1176.29 357.87 1223.07 344.23 1255.61 334.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1256.07 337.17 1262.11 332.86 1254.7 332.46 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1240 343.6 0 19 3 -bam ",
		label=bam,
		lp="1240,345.5",
		pos="e,1263.6,332.43 1146.4,366.58 1176.3,357.87 1223.1,344.23 1255.6,334.75"];
	stringtie -> stringtie_transcript_gtf	[_draw_="c 7 -#000000 B 4 663.67 88.58 663.8 81.52 664.01 71.24 664.18 62.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 666.62 62.82 664.31 55.78 661.72 62.73 ",
		pos="e,664.34,54.265 663.67,88.578 663.8,81.523 664.01,71.24 664.18,62.547"];
	stringtie -> stringtie_gene_expression_tsv	[_draw_="c 7 -#000000 B 7 655.27 88.74 649 82.92 639.88 75.4 630.5 71 624.38 68.13 594.24 61.71 566.09 56.1 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 566.66 53.72 559.32 54.76 565.71 58.53 ",
		pos="e,557.83,54.468 655.27,88.743 649,82.92 639.88,75.401 630.5,71 624.38,68.128 594.24,61.714 566.09,56.103"];
	bam_to_trimmed_fastq -> kallisto	[_draw_="c 7 -#000000 B 16 1292 313.71 1290.77 301.39 1286.47 278.54 1271.5 268 1258.14 258.59 993.81 260.97 977.5 260 895.52 255.1 862.19 \
288.01 793.5 243 785.01 237.44 788.92 230.86 782.5 223 760.66 196.25 728.93 171.54 708.76 157.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 710.26 155.18 703.13 153.15 707.44 159.19 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 806.5 231.1 0 26 6 -fastqs ",
		label=fastqs,
		lp="806.5,233",
		pos="e,701.89,152.28 1292,313.71 1290.8,301.39 1286.5,278.54 1271.5,268 1258.1,258.59 993.81,260.97 977.5,260 895.52,255.1 862.19,288.01 \
793.5,243 785.01,237.44 788.92,230.86 782.5,223 760.66,196.25 728.93,171.54 708.76,157.12"];
	bam_to_trimmed_fastq -> strandedness_check	[_draw_="c 7 -#000000 B 7 1228.61 313.53 1212.83 311.1 1196 308.22 1180.5 305 1160.03 300.74 1137.45 294.84 1119.13 289.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1119.89 287.4 1112.49 287.86 1118.56 292.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1195 298.6 0 29 6 -reads2 ",
		label=reads2,
		lp="1195,300.5",
		pos="e,1111,287.45 1228.6,313.53 1212.8,311.1 1196,308.22 1180.5,305 1160,300.74 1137.4,294.84 1119.1,289.73"];
	bam_to_trimmed_fastq -> strandedness_check	[_draw_="c 7 -#000000 B 7 1268.3 313.57 1251.22 307.89 1227.68 300.62 1206.5 296 1193.67 293.2 1179.98 290.77 1166.56 288.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1167.03 286.29 1159.74 287.68 1166.3 291.14 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1254 298.6 0 29 6 -reads1 ",
		label=reads1,
		lp="1254,300.5",
		pos="e,1158.2,287.46 1268.3,313.57 1251.2,307.89 1227.7,300.62 1206.5,296 1193.7,293.2 1180,290.77 1166.6,288.7"];
	bam_to_trimmed_fastq -> star_align_fusion	[_draw_="c 7 -#000000 B 7 1293.25 313.51 1294.22 307.73 1296.43 300.36 1301.5 296 1304.33 293.57 1309.12 291.46 1315.07 289.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1315.57 292.03 1321.7 287.86 1314.31 287.3 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1312.5 298.6 0 22 5 -fastq ",
		label=fastq,
		lp="1312.5,300.5",
		pos="e,1323.2,287.47 1293.2,313.51 1294.2,307.73 1296.4,300.36 1301.5,296 1304.3,293.57 1309.1,291.46 1315.1,289.63"];
	bam_to_trimmed_fastq -> star_align_fusion	[_draw_="c 7 -#000000 B 10 1306.5 313.6 1310.99 310.88 1315.97 307.83 1320.5 305 1326.77 301.08 1327.77 299.07 1334.5 296 1339.26 293.83 \
1344.37 291.86 1349.51 290.09 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1350.21 292.43 1356.12 287.95 1348.71 287.77 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1348 298.6 0 27 6 -fastq2 ",
		label=fastq2,
		lp="1348,300.5",
		pos="e,1357.6,287.48 1306.5,313.6 1311,310.88 1316,307.83 1320.5,305 1326.8,301.08 1327.8,299.07 1334.5,296 1339.3,293.83 1344.4,291.86 \
1349.5,290.09"];
	star_fusion_detect -> star_fusion_predict	[_draw_="c 7 -#000000 B 4 1562.22 88.58 1557.6 81.23 1550.79 70.37 1545.2 61.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1547.29 60.17 1541.49 55.55 1543.14 62.78 ",
		pos="e,1540.7,54.265 1562.2,88.578 1557.6,81.226 1550.8,70.368 1545.2,61.457"];
	star_fusion_detect -> star_fusion_abridge	[_draw_="c 7 -#000000 B 4 1581.37 88.58 1594.75 80.46 1615.17 68.06 1630.53 58.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1631.6 60.95 1636.31 55.22 1629.06 56.76 ",
		pos="e,1637.6,54.434 1581.4,88.578 1594.7,80.458 1615.2,68.061 1630.5,58.734"];
	cgpbigwig_bamcoverage -> bamcoverage_bigwig	[_draw_="c 7 -#000000 B 4 956.35 88.58 971.92 80.31 995.83 67.61 1013.48 58.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1014.25 60.59 1019.29 55.14 1011.96 56.26 ",
		pos="e,1020.6,54.434 956.35,88.578 971.92,80.31 995.83,67.608 1013.5,58.228"];
	index_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 844.5 133.5 844.5 152.5 936.5 152.5 936.5 133.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 890.5 140.5 0 76 14 -samtools index ",
		height=0.27778,
		label="samtools index",
		pos="890.5,143",
		rects="844.5,133.5,936.5,152.5",
		width=1.2778];
	index_bam -> stringtie	[_draw_="c 7 -#000000 B 4 845.65 133.5 803.55 125.53 741.27 113.73 701.54 106.21 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 702.24 103.84 694.91 104.95 701.33 108.66 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 806 118.6 0 19 3 -bam ",
		label=bam,
		lp="806,120.5",
		pos="e,693.42,104.67 845.65,133.5 803.55,125.53 741.27,113.73 701.54,106.21"];
	index_bam -> cgpbigwig_bamcoverage	[_draw_="c 7 -#000000 B 4 900.14 133.71 907.06 127.76 916.54 119.61 924.57 112.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 926.03 114.67 929.74 108.25 922.84 110.96 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 929 118.6 0 19 3 -bam ",
		label=bam,
		lp="929,120.5",
		pos="e,930.89,107.27 900.14,133.71 907.06,127.76 916.54,119.61 924.57,112.7"];
	index_bam -> bam_to_cram	[_draw_="c 7 -#000000 B 4 844.78 137.11 777.13 129.87 649.49 116.22 566.78 107.37 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 567.14 104.95 559.92 106.64 566.62 109.82 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 735 118.6 0 19 3 -bam ",
		label=bam,
		lp="735,120.5",
		pos="e,558.42,106.48 844.78,137.11 777.13,129.87 649.49,116.22 566.78,107.37"];
	index_bam -> generate_qc_metrics	[_draw_="c 7 -#000000 B 7 931.1 133.54 956.25 128.35 989.22 121.65 1018.5 116 1030.66 113.65 1043.74 111.21 1056.13 108.94 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1056.22 111.41 1062.67 107.74 1055.34 106.59 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1028 118.6 0 19 3 -bam ",
		label=bam,
		lp="1028,120.5",
		pos="e,1064.2,107.47 931.1,133.54 956.25,128.35 989.22,121.65 1018.5,116 1030.7,113.65 1043.7,111.21 1056.1,108.94"];
	kallisto -> fusion_evidence	[_draw_="c 7 -#000000 B 7 733.6 137.88 750.87 135.31 767.9 131.27 773.5 125 788.66 108.05 787.17 80.07 784.21 62.37 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 786.64 62.04 782.89 55.64 781.83 62.98 ",
		pos="e,782.6,54.153 733.6,137.88 750.87,135.31 767.9,131.27 773.5,125 788.66,108.05 787.17,80.074 784.21,62.366"];
	kallisto -> transcript_abundance_tsv	[_draw_="c 7 -#000000 B 10 673.28 133.62 649.29 121.6 602.63 99.62 560.5 88 484.76 67.11 462.76 77.25 385.5 63 375.04 61.07 363.82 58.69 \
353.33 56.34 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 353.95 53.97 346.58 54.8 352.86 58.74 ",
		pos="e,345.11,54.46 673.28,133.62 649.29,121.6 602.63,99.622 560.5,88 484.76,67.107 462.76,77.251 385.5,63 375.04,61.07 363.82,58.694 \
353.33,56.337"];
	kallisto -> transcript_abundance_h5	[_draw_="c 7 -#000000 B 7 733.94 137.07 748.78 134.53 765.17 130.7 779.5 125 785.06 122.79 849.27 80.9 882.63 59.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 883.86 61.17 888.37 55.28 881.17 57.07 ",
		pos="e,889.64,54.45 733.94,137.07 748.78,134.53 765.17,130.7 779.5,125 785.06,122.79 849.27,80.901 882.63,59.041"];
	kallisto -> transcript_to_gene	[_draw_="c 7 -#000000 B 7 645.09 138.3 609.89 135.21 559.48 130.45 515.5 125 477.85 120.33 435.75 114.03 402.51 108.8 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 403.05 106.41 395.75 107.73 402.29 111.25 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 555 118.6 0 79 19 -transcript_table_h5 ",
		label=transcript_table_h5,
		lp="555,120.5",
		pos="e,394.26,107.49 645.09,138.3 609.89,135.21 559.48,130.45 515.5,125 477.85,120.33 435.75,114.03 402.51,108.8"];
	transcript_to_gene -> gene_abundance	[_draw_="c 7 -#000000 B 4 316.57 88.58 289.98 79.94 248.5 66.47 219.34 56.99 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 220.32 54.73 212.9 54.9 218.8 59.39 ",
		pos="e,211.46,54.434 316.57,88.578 289.98,79.941 248.5,66.465 219.34,56.992"];
	strandedness_check -> strand_info	[_draw_="c 7 -#000000 B 10 1144.53 268.54 1180.4 261.84 1218.5 250.78 1218.5 234 1218.5 234 1218.5 234 1218.5 97 1218.5 84.52 1223.76 71.43 \
1228.88 61.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1230.99 62.89 1232.29 55.59 1226.72 60.48 ",
		pos="e,1233,54.272 1144.5,268.54 1180.4,261.84 1218.5,250.78 1218.5,234 1218.5,234 1218.5,234 1218.5,97 1218.5,84.517 1223.8,71.429 1228.9,\
61.636"];
	index_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 0 35.5 0 54.5 119 54.5 119 35.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 59.5 42.5 0 103 19 -samtools index cram ",
		height=0.27778,
		label="samtools index cram",
		pos="59.5,45",
		rects="0,35.5,119,54.5",
		width=1.6528];
	index_cram -> cram	[_draw_="c 7 -#000000 B 10 75.58 54.42 89.16 61.8 109.41 71.47 128.5 75.5 155.9 81.28 355.08 87.23 380.5 75.5 387.07 72.47 392.6 66.86 396.84 \
61.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 398.75 62.82 400.66 55.65 394.7 60.06 ",
		pos="e,401.51,54.401 75.579,54.418 89.164,61.797 109.41,71.468 128.5,75.5 155.9,81.285 355.08,87.234 380.5,75.5 387.07,72.466 392.6,66.858 \
396.84,61.271"];
	mark_dup	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 821.5 178.5 821.5 197.5 959.5 197.5 959.5 178.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 890.5 185.5 0 122 24 -Mark duplicates and Sort ",
		height=0.27778,
		label="Mark duplicates and Sort",
		pos="890.5,188",
		rects="821.5,178.5,959.5,197.5",
		width=1.9167];
	mark_dup -> index_bam	[_draw_="c 7 -#000000 B 4 890.5 178.71 890.5 173.59 890.5 166.85 890.5 160.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 892.95 160.78 890.5 153.78 888.05 160.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 900 163.6 0 19 3 -bam ",
		label=bam,
		lp="900,165.5",
		pos="e,890.5,152.27 890.5,178.71 890.5,173.59 890.5,166.85 890.5,160.67"];
	sort_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 821 223.5 821 242.5 904 242.5 904 223.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 862.5 230.5 0 67 13 -samtools sort ",
		height=0.27778,
		label="samtools sort",
		pos="862.5,233",
		rects="821,223.5,904,242.5",
		width=1.1528];
	sort_bam -> mark_dup	[_draw_="c 7 -#000000 B 4 867.9 223.71 871.46 218.24 876.24 210.9 880.48 204.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 882.53 205.74 884.29 198.53 878.42 203.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 888 208.6 0 19 3 -bam ",
		label=bam,
		lp="888,210.5",
		pos="e,885.12,197.27 867.9,223.71 871.46,218.24 876.24,210.9 880.48,204.38"];
	star_align_fusion -> star_fusion_log	[_draw_="c 7 -#000000 B 10 1484.81 275.99 1602.38 273.44 1790.5 264.58 1790.5 234 1790.5 234 1790.5 234 1790.5 97 1790.5 82.95 1781.56 69.71 \
1772.99 60.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1774.92 58.71 1768.28 55.41 1771.41 62.13 ",
		pos="e,1767.2,54.325 1484.8,275.99 1602.4,273.44 1790.5,264.58 1790.5,234 1790.5,234 1790.5,234 1790.5,97 1790.5,82.947 1781.6,69.706 \
1773,60.239"];
	star_align_fusion -> star_fusion_out	[_draw_="c 7 -#000000 B 10 1380.23 268.64 1370.49 260.91 1358.5 248.47 1358.5 234 1358.5 234 1358.5 234 1358.5 97 1358.5 82.82 1349.29 69.58 \
1340.45 60.15 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1342.29 58.52 1335.59 55.33 1338.84 62 ",
		pos="e,1334.5,54.264 1380.2,268.64 1370.5,260.91 1358.5,248.47 1358.5,234 1358.5,234 1358.5,234 1358.5,97 1358.5,82.82 1349.3,69.585 \
1340.5,60.152"];
	star_align_fusion -> star_junction_out	[_draw_="c 7 -#000000 B 10 1395.98 268.6 1399.2 260.04 1403.5 246.33 1403.5 234 1403.5 234 1403.5 234 1403.5 97 1403.5 84.22 1409.4 71 1415.09 \
61.22 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1417.05 62.71 1418.69 55.48 1412.89 60.11 ",
		pos="e,1419.5,54.193 1396,268.6 1399.2,260.04 1403.5,246.33 1403.5,234 1403.5,234 1403.5,234 1403.5,97 1403.5,84.217 1409.4,70.998 1415.1,\
61.221"];
	star_align_fusion -> star_fusion_detect	[_draw_="c 7 -#000000 B 10 1427.3 268.61 1444.03 262.29 1460.5 251.6 1460.5 234 1460.5 234 1460.5 234 1460.5 142 1460.5 127.13 1469.5 117.28 \
1482.28 110.77 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1482.93 113.16 1488.35 108.1 1480.96 108.67 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1485.5 186.1 0 50 13 -junction_file ",
		label=junction_file,
		lp="1485.5,188",
		pos="e,1489.7,107.49 1427.3,268.61 1444,262.29 1460.5,251.6 1460.5,234 1460.5,234 1460.5,234 1460.5,142 1460.5,127.13 1469.5,117.28 1482.3,\
110.77"];
	star_align_fusion -> sort_bam	[_draw_="c 7 -#000000 B 7 1300.08 269.34 1294.13 268.88 1288.23 268.43 1282.5 268 1119.12 255.86 1075.14 264.3 911.95 243.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 912.35 240.97 905.09 242.5 911.72 245.83 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1141 253.6 0 43 9 -input_bam ",
		label=input_bam,
		lp="1141,255.5",
		pos="e,903.59,242.31 1300.1,269.34 1294.1,268.88 1288.2,268.43 1282.5,268 1119.1,255.86 1075.1,264.3 911.95,243.39"];
	bam_to_cram -> index_cram	[_draw_="c 7 -#000000 B 10 419.58 88.54 417.87 88.35 416.17 88.17 414.5 88 286.71 74.69 253.18 84.42 126.5 63 116.8 61.36 106.44 59.03 96.84 \
56.61 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 97.49 54.25 90.1 54.86 96.26 58.99 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 309 73.6 0 21 4 -cram ",
		label=cram,
		lp="309,75.5",
		pos="e,88.633,54.485 419.58,88.539 417.87,88.354 416.17,88.174 414.5,88 286.71,74.687 253.18,84.425 126.5,63 116.8,61.359 106.44,59.026 \
96.84,56.612"];
	generate_qc_metrics -> metrics	[_draw_="c 7 -#000000 B 4 1121.57 88.58 1130.99 80.71 1145.21 68.82 1156.24 59.6 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1157.65 61.61 1161.45 55.24 1154.51 57.85 ",
		pos="e,1162.6,54.265 1121.6,88.578 1131,80.706 1145.2,68.815 1156.2,59.598"];
	generate_qc_metrics -> chart	[_draw_="c 7 -#000000 B 4 1113.15 88.58 1114.53 81.52 1116.55 71.24 1118.26 62.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1120.65 63.09 1119.59 55.75 1115.84 62.15 ",
		pos="e,1119.9,54.265 1113.2,88.578 1114.5,81.523 1116.6,71.24 1118.3,62.547"];
	default1	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 908 223.5 908 242.5 985 242.5 985 223.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 946.5 230.5 0 61 12 -\"coordinate\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"coordinate\"",
		pos="946.5,233",
		rects="908,223.5,985,242.5",
		width=1.0694];
	default1 -> mark_dup	[_draw_="c 7 -#000000 B 7 934.18 223.51 930.39 220.83 926.24 217.84 922.5 215 917.33 211.07 911.8 206.66 906.82 202.6 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 908.58 200.88 901.62 198.33 905.47 204.67 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 956 208.6 0 67 16 -input_sort_order ",
		label=input_sort_order,
		lp="956,210.5",
		pos="e,900.45,197.37 934.18,223.51 930.39,220.83 926.24,217.84 922.5,215 917.33,211.07 911.8,206.66 906.82,202.6"];
}