digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 593 443 593 443 0 ",
		bb="0,0,443,593",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 24 530 24 585 421 585 421 530 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 74 573 0 84 15 -Workflow Inputs ",
			bb="24,530,421,585",
			label="Workflow Inputs",
			lheight=0.15,
			lp="74,575.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 32.5 538.5 32.5 557.5 95.5 557.5 95.5 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 64 545.5 0 47 9 -reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference,
			pos="64,548",
			rects="32.5,538.5,95.5,557.5",
			width=0.875];
		tumor_cram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 337 538.5 337 557.5 413 557.5 413 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 375 545.5 0 60 10 -tumor_cram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_cram,
			pos="375,548",
			rects="337,538.5,413,557.5",
			width=1.0556];
		insert_size	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 263.5 538.5 263.5 557.5 332.5 557.5 332.5 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 298 545.5 0 53 11 -insert_size ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=insert_size,
			pos="298,548",
			rects="263.5,538.5,332.5,557.5",
			width=0.95833];
		interval_list	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 100 538.5 100 557.5 174 557.5 174 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 137 545.5 0 58 13 -interval_list ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=interval_list,
			pos="137,548",
			rects="100,538.5,174,557.5",
			width=1.0278];
		normal_cram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 178.5 538.5 178.5 557.5 259.5 557.5 259.5 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 219 545.5 0 65 11 -normal_cram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_cram,
			pos="219,548",
			rects="178.5,538.5,259.5,557.5",
			width=1.125];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 38 8 38 63 213 63 213 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 92 15 0 92 16 -Workflow Outputs ",
			bb="38,8,213,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="92,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		filtered_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 46.5 35.5 46.5 54.5 117.5 54.5 117.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 82 42.5 0 55 12 -filtered_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=filtered_vcf,
			pos="82,45",
			rects="46.5,35.5,117.5,54.5",
			width=0.98611];
		unfiltered_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 121.5 35.5 121.5 54.5 204.5 54.5 204.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 163 42.5 0 67 14 -unfiltered_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=unfiltered_vcf,
			pos="163,45",
			rects="121.5,35.5,204.5,54.5",
			width=1.1528];
	}
	filter	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 49.5 80.5 49.5 99.5 150.5 99.5 150.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 100 87.5 0 85 18 -fp_filter workflow ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="fp_filter workflow",
		pos="100,90",
		rects="49.5,80.5,150.5,99.5",
		width=1.4028];
	reference -> filter	[_draw_="c 7 -#000000 B 10 39.44 538.66 21.39 530.79 0 517.03 0 496 0 496 0 496 0 134 0 112.54 19.68 101.66 41.57 96.19 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 41.91 98.62 48.23 94.74 40.87 93.84 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 20 313.1 0 40 9 -reference ",
		label=reference,
		lp="20,315",
		pos="e,49.707,94.413 39.439,538.66 21.391,530.79 0,517.03 0,496 0,496 0,496 0,134 0,112.54 19.676,101.66 41.572,96.192"];
	pindel_cat	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 181.5 440.5 181.5 459.5 314.5 459.5 314.5 440.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 248 447.5 0 117 21 -Per-chromosome pindel ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="Per-chromosome pindel",
		pos="248,450",
		rects="181.5,440.5,314.5,459.5",
		width=1.8472];
	reference -> pindel_cat	[_draw_="c 7 -#000000 B 7 63.72 538.81 63.73 525.48 65.84 499.18 81 485 94.67 472.22 135.61 463.76 173.53 458.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 173.45 460.97 180.06 457.61 172.8 456.11 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 101 493.1 0 40 9 -reference ",
		label=reference,
		lp="101,495",
		pos="e,181.56,457.41 63.717,538.81 63.735,525.48 65.839,499.18 81,485 94.668,472.22 135.61,463.76 173.53,458.48"];
	somaticfilter	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 107.5 350.5 107.5 369.5 236.5 369.5 236.5 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 172 357.5 0 113 24 -pindel somatic filter v1 ",
		height=0.27778,
		label="pindel somatic filter v1",
		pos="172,360",
		rects="107.5,350.5,236.5,369.5",
		width=1.7917];
	reference -> somaticfilter	[_draw_="c 7 -#000000 B 10 61.02 538.53 54.87 519.48 42.8 472.4 61 440 83.17 400.53 112.97 415.69 148 387 152.14 383.61 156.24 379.51 159.85 \
375.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 161.6 377.31 164.38 370.43 157.92 374.07 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 81 448.1 0 40 9 -reference ",
		label=reference,
		lp="81,450",
		pos="e,165.38,369.29 61.019,538.53 54.867,519.48 42.797,472.4 61,440 83.175,400.53 112.97,415.69 148,387 152.14,383.61 156.24,379.51 \
159.85,375.59"];
	region_filter	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 29.5 215.5 29.5 234.5 170.5 234.5 170.5 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 100 222.5 0 125 25 -SelectVariants (GATK 3.6) ",
		height=0.27778,
		label="SelectVariants (GATK 3.6)",
		pos="100,225",
		rects="29.5,215.5,170.5,234.5",
		width=1.9583];
	reference -> region_filter	[_draw_="c 7 -#000000 B 10 59.35 538.62 54.32 528.74 47 511.68 47 496 47 496 47 496 47 269 47 255.36 57.72 245.29 69.51 238.34 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 70.54 240.57 75.57 235.12 68.24 236.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 67 380.6 0 40 9 -reference ",
		label=reference,
		lp="67,382.5",
		pos="e,76.908,234.41 59.355,538.62 54.321,528.74 47,511.68 47,496 47,496 47,496 47,269 47,255.36 57.716,245.29 69.51,238.34"];
	tumor_cram -> filter	[_draw_="c 7 -#000000 B 10 390.39 538.66 404.1 529.99 422 515.02 422 496 422 496 422 496 422 134 422 107.75 251.68 96.94 158.78 92.99 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 158.92 90.55 151.82 92.71 158.72 95.44 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 432.5 313.1 0 21 4 -cram ",
		label=cram,
		lp="432.5,315",
		pos="e,150.31,92.643 390.39,538.66 404.1,529.99 422,515.02 422,496 422,496 422,496 422,134 422,107.75 251.68,96.937 158.78,92.992"];
	tumor_cram -> pindel_cat	[_draw_="c 7 -#000000 B 7 374.03 538.52 372.06 525.26 366.39 499.63 351 485 339.83 474.38 325.28 467.08 310.64 462.05 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 311.38 459.72 303.97 459.95 309.9 464.39 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 388.5 493.1 0 49 10 -tumor_cram ",
		label=tumor_cram,
		lp="388.5,495",
		pos="e,302.52,459.49 374.03,538.52 372.06,525.26 366.39,499.63 351,485 339.83,474.38 325.28,467.08 310.64,462.05"];
	insert_size -> pindel_cat	[_draw_="c 7 -#000000 B 7 301.19 538.76 305.46 526.27 311.49 502.19 302 485 296.85 475.66 287.93 468.54 278.81 463.29 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 280.21 461.25 272.87 460.17 277.93 465.59 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 328 493.1 0 44 11 -insert_size ",
		label=insert_size,
		lp="328,495",
		pos="e,271.53,459.47 301.19,538.76 305.46,526.27 311.49,502.19 302,485 296.85,475.66 287.93,468.54 278.81,463.29"];
	interval_list -> region_filter	[_draw_="c 7 -#000000 B 13 133.8 538.75 130.66 530.37 125.92 516.95 123 505 107.59 442.05 100 425.81 100 361 100 361 100 361 100 269 100 \
260.31 100 250.63 100 242.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 102.45 242.76 100 235.76 97.55 242.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 124.5 380.6 0 47 13 -interval_list ",
		label=interval_list,
		lp="124.5,382.5",
		pos="e,100,234.24 133.8,538.75 130.66,530.37 125.92,516.95 123,505 107.59,442.05 100,425.81 100,361 100,361 100,361 100,269 100,260.31 \
100,250.63 100,242.65"];
	get_chromosome_list	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 123 485.5 123 504.5 245 504.5 245 485.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 184 492.5 0 106 19 -get_chromosome_list ",
		height=0.27778,
		label=get_chromosome_list,
		pos="184,495",
		rects="123,485.5,245,504.5",
		width=1.6944];
	interval_list -> get_chromosome_list	[_draw_="c 7 -#000000 B 4 144.76 538.58 151.81 530.93 162.36 519.48 170.74 510.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 172.42 512.19 175.36 505.38 168.81 508.87 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 190.5 515.6 0 47 13 -interval_list ",
		label=interval_list,
		lp="190.5,517.5",
		pos="e,176.38,504.26 144.76,538.58 151.81,530.93 162.36,519.48 170.74,510.39"];
	normal_cram -> pindel_cat	[_draw_="c 7 -#000000 B 7 225.96 538.62 232.21 530.57 240.98 517.76 245 505 248.83 492.82 249.44 478.35 249.17 467.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 251.63 467.66 248.85 460.79 246.74 467.89 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 274.5 493.1 0 53 11 -normal_cram ",
		label=normal_cram,
		lp="274.5,495",
		pos="e,248.78,459.28 225.96,538.62 232.21,530.57 240.98,517.76 245,505 248.83,492.82 249.44,478.35 249.17,467.46"];
	filter -> filtered_vcf	[_draw_="c 7 -#000000 B 4 96.53 80.71 94.29 75.36 91.3 68.22 88.62 61.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 91.01 61.17 86.04 55.66 86.49 63.06 ",
		pos="e,85.46,54.265 96.529,80.709 94.288,75.355 91.3,68.217 88.617,61.807"];
	filter -> unfiltered_vcf	[_draw_="c 7 -#000000 B 4 112.45 80.5 121.33 74.44 133.46 66.16 143.61 59.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 144.93 61.3 149.33 55.33 142.17 57.25 ",
		pos="e,150.58,54.478 112.45,80.505 121.33,74.438 133.46,66.16 143.61,59.232"];
	cat_all	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 208.5 395.5 208.5 414.5 257.5 414.5 257.5 395.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 233 402.5 0 33 7 -cat_all ",
		height=0.27778,
		label=cat_all,
		pos="233,405",
		rects="208.5,395.5,257.5,414.5",
		width=0.68056];
	pindel_cat -> cat_all	[_draw_="c 7 -#000000 B 4 245.11 440.71 243.28 435.47 240.86 428.53 238.66 422.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 241 421.5 236.38 415.69 236.37 423.11 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 293.5 425.6 0 105 22 -chromosome_pindel_outs ",
		label=chromosome_pindel_outs,
		lp="293.5,427.5",
		pos="e,235.88,414.27 245.11,440.71 243.28,435.47 240.86,428.53 238.66,422.24"];
	bgzip	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 123.5 305.5 123.5 324.5 188.5 324.5 188.5 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 156 312.5 0 49 9 -bgzip VCF ",
		height=0.27778,
		label="bgzip VCF",
		pos="156,315",
		rects="123.5,305.5,188.5,324.5",
		width=0.90278];
	somaticfilter -> bgzip	[_draw_="c 7 -#000000 B 4 168.92 350.71 166.97 345.47 164.38 338.53 162.04 332.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 164.34 331.39 159.6 325.68 159.75 333.1 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 171.5 335.6 0 13 4 -file ",
		label=file,
		lp="171.5,337.5",
		pos="e,159.08,324.27 168.92,350.71 166.97,345.47 164.38,338.53 162.04,332.24"];
	remove_end_tags	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 35.5 170.5 35.5 189.5 164.5 189.5 164.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 100 177.5 0 113 20 -remove END INFO tags ",
		height=0.27778,
		label="remove END INFO tags",
		pos="100,180",
		rects="35.5,170.5,164.5,189.5",
		width=1.7917];
	region_filter -> remove_end_tags	[_draw_="c 7 -#000000 B 4 100 215.71 100 210.59 100 203.85 100 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 102.45 197.78 100 190.78 97.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 106.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="106.5,202.5",
		pos="e,100,189.27 100,215.71 100,210.59 100,203.85 100,197.67"];
	cat_all -> somaticfilter	[_draw_="c 7 -#000000 B 4 220.95 395.5 212.34 389.44 200.6 381.16 190.77 374.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 192.4 372.38 185.26 370.35 189.57 376.39 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 256 380.6 0 98 21 -pindel_output_summary ",
		label=pindel_output_summary,
		lp="256,382.5",
		pos="e,184.03,369.48 220.95,395.5 212.34,389.44 200.6,381.16 190.77,374.23"];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 108 260.5 108 279.5 170 279.5 170 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 139 267.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="139,270",
		rects="108,260.5,170,279.5",
		width=0.86111];
	index -> region_filter	[_draw_="c 7 -#000000 B 4 131.48 260.71 126.3 255 119.28 247.26 113.18 240.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 115.03 238.93 108.51 235.39 111.4 242.22 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 128.5 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="128.5,247.5",
		pos="e,107.5,234.27 131.48,260.71 126.3,255 119.28,247.26 113.18,240.54"];
	get_chromosome_list -> pindel_cat	[_draw_="c 7 -#000000 B 7 185.61 485.67 187.12 479.97 189.93 472.63 195 468 196.81 466.35 198.77 464.86 200.85 463.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 201.97 465.7 206.94 460.2 199.63 461.39 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 222 470.6 0 54 10 -chromosome ",
		label=chromosome,
		lp="222,472.5",
		pos="e,208.27,459.47 185.61,485.67 187.12,479.97 189.93,472.63 195,468 196.81,466.35 198.77,464.86 200.85,463.51"];
	reindex	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 69 125.5 69 144.5 131 144.5 131 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 100 132.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="100,135",
		rects="69,125.5,131,144.5",
		width=0.86111];
	reindex -> filter	[_draw_="c 7 -#000000 B 4 100 125.71 100 120.59 100 113.85 100 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 102.45 107.78 100 100.78 97.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 106.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="106.5,112.5",
		pos="e,100,99.265 100,125.71 100,120.59 100,113.85 100,107.67"];
	remove_end_tags -> reindex	[_draw_="c 7 -#000000 B 4 100 170.71 100 165.59 100 158.85 100 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 102.45 152.78 100 145.78 97.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 106.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="106.5,157.5",
		pos="e,100,144.27 100,170.71 100,165.59 100,158.85 100,152.67"];
	bgzip -> index	[_draw_="c 7 -#000000 B 4 152.72 305.71 150.61 300.36 147.78 293.22 145.25 286.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 147.68 286.28 142.82 280.67 143.12 288.08 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 155.5 290.6 0 13 3 -vcf ",
		label=vcf,
		lp="155.5,292.5",
		pos="e,142.27,279.27 152.72,305.71 150.61,300.36 147.78,293.22 145.25,286.81"];
}