digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 593 489 593 489 0 ",
		bb="0,0,489,593",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 530 8 585 399 585 399 530 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 573 0 84 15 -Workflow Inputs ",
			bb="8,530,399,585",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,575.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 538.5 16.5 557.5 89.5 557.5 89.5 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 53 545.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="53,548",
			rects="16.5,538.5,89.5,557.5",
			width=1.0139];
		interval_list	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 94 538.5 94 557.5 168 557.5 168 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 131 545.5 0 58 13 -interval_list ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=interval_list,
			pos="131,548",
			rects="94,538.5,168,557.5",
			width=1.0278];
		insert_size	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 254.5 538.5 254.5 557.5 323.5 557.5 323.5 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 289 545.5 0 53 11 -insert_size ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=insert_size,
			pos="289,548",
			rects="254.5,538.5,323.5,557.5",
			width=0.95833];
		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 327.5 538.5 327.5 557.5 390.5 557.5 390.5 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 359 545.5 0 47 9 -reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference,
			pos="359,548",
			rects="327.5,538.5,390.5,557.5",
			width=0.875];
		normal_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 172 538.5 172 557.5 250 557.5 250 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 211 545.5 0 62 10 -normal_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_bam,
			pos="211,548",
			rects="172,538.5,250,557.5",
			width=1.0833];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 162 8 162 63 337 63 337 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 216 15 0 92 16 -Workflow Outputs ",
			bb="162,8,337,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="216,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		filtered_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 170.5 35.5 170.5 54.5 241.5 54.5 241.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 206 42.5 0 55 12 -filtered_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=filtered_vcf,
			pos="206,45",
			rects="170.5,35.5,241.5,54.5",
			width=0.98611];
		unfiltered_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 245.5 35.5 245.5 54.5 328.5 54.5 328.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 287 42.5 0 67 14 -unfiltered_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=unfiltered_vcf,
			pos="287,45",
			rects="245.5,35.5,328.5,54.5",
			width=1.1528];
	}
	filter	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 196.5 80.5 196.5 99.5 297.5 99.5 297.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 247 87.5 0 85 18 -fp_filter workflow ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="fp_filter workflow",
		pos="247,90",
		rects="196.5,80.5,297.5,99.5",
		width=1.4028];
	tumor_bam -> filter	[_draw_="c 7 -#000000 B 10 47.53 538.73 41.61 528.95 33 511.98 33 496 33 496 33 496 33 134 33 102.22 124.85 93.63 188.21 91.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 188.12 93.93 195.04 91.27 187.97 89.03 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 42.5 313.1 0 19 3 -bam ",
		label=bam,
		lp="42.5,315",
		pos="e,196.56,91.224 47.535,538.73 41.613,528.95 33,511.98 33,496 33,496 33,496 33,134 33,102.22 124.85,93.626 188.21,91.476"];
	pindel_cat	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 166.5 440.5 166.5 459.5 299.5 459.5 299.5 440.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 233 447.5 0 117 21 -Per-chromosome pindel ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="Per-chromosome pindel",
		pos="233,450",
		rects="166.5,440.5,299.5,459.5",
		width=1.8472];
	tumor_bam -> pindel_cat	[_draw_="c 7 -#000000 B 7 50.49 538.6 47.14 525.45 43 499.98 56 485 69.55 469.38 116.3 460.83 158.35 456.2 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 158.48 458.66 165.18 455.49 157.97 453.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 79 493.1 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="79,495",
		pos="e,166.69,455.33 50.495,538.6 47.14,525.45 43.005,499.98 56,485 69.554,469.38 116.3,460.83 158.35,456.2"];
	get_chromosome_list	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 104 485.5 104 504.5 226 504.5 226 485.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 165 492.5 0 106 19 -get_chromosome_list ",
		height=0.27778,
		label=get_chromosome_list,
		pos="165,495",
		rects="104,485.5,226,504.5",
		width=1.6944];
	interval_list -> get_chromosome_list	[_draw_="c 7 -#000000 B 4 136.61 538.58 141.57 531.15 148.9 520.15 154.87 511.19 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 156.81 512.71 158.65 505.52 152.73 509.99 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 176.5 515.6 0 47 13 -interval_list ",
		label=interval_list,
		lp="176.5,517.5",
		pos="e,159.49,504.26 136.61,538.58 141.57,531.15 148.9,520.15 154.87,511.19"];
	region_filter	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 176.5 215.5 176.5 234.5 317.5 234.5 317.5 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 247 222.5 0 125 25 -SelectVariants (GATK 3.6) ",
		height=0.27778,
		label="SelectVariants (GATK 3.6)",
		pos="247,225",
		rects="176.5,215.5,317.5,234.5",
		width=1.9583];
	interval_list -> region_filter	[_draw_="c 7 -#000000 B 10 120.98 538.74 110.95 529.47 97 513.45 97 496 97 496 97 496 97 269 97 252.19 132.26 241.57 168.58 235.09 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 168.85 237.53 175.34 233.95 168.03 232.7 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 120.5 380.6 0 47 13 -interval_list ",
		label=interval_list,
		lp="120.5,382.5",
		pos="e,176.83,233.69 120.98,538.74 110.95,529.47 97,513.45 97,496 97,496 97,496 97,269 97,252.19 132.26,241.57 168.58,235.09"];
	insert_size -> pindel_cat	[_draw_="c 7 -#000000 B 7 289.93 538.7 290.93 526.12 291.18 501.93 281 485 275.71 476.2 267.17 469.07 258.75 463.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 260.04 461.57 252.77 460.11 257.54 465.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 310 493.1 0 44 11 -insert_size ",
		label=insert_size,
		lp="310,495",
		pos="e,251.47,459.33 289.93,538.7 290.93,526.12 291.18,501.93 281,485 275.71,476.2 267.17,469.07 258.75,463.65"];
	somaticfilter	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 254.5 350.5 254.5 369.5 383.5 369.5 383.5 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 319 357.5 0 113 24 -pindel somatic filter v1 ",
		height=0.27778,
		label="pindel somatic filter v1",
		pos="319,360",
		rects="254.5,350.5,383.5,369.5",
		width=1.7917];
	reference -> somaticfilter	[_draw_="c 7 -#000000 B 13 372.61 538.68 385.2 529.82 402 514.53 402 496 402 496 402 496 402 404 402 392.03 403.64 386.28 395 378 393.42 \
376.49 391.74 375.1 389.97 373.82 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 391.31 371.77 384.06 370.23 388.77 375.96 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 422 448.1 0 40 9 -reference ",
		label=reference,
		lp="422,450",
		pos="e,382.77,369.44 372.61,538.68 385.2,529.82 402,514.53 402,496 402,496 402,496 402,404 402,392.03 403.64,386.28 395,378 393.42,376.49 \
391.74,375.1 389.97,373.82"];
	reference -> filter	[_draw_="c 7 -#000000 B 10 390.48 542.33 416.43 536.5 449 523.66 449 496 449 496 449 496 449 134 449 104.46 365.34 95.14 305.7 92.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 306.07 89.8 298.96 91.94 305.85 94.7 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 469 313.1 0 40 9 -reference ",
		label=reference,
		lp="469,315",
		pos="e,297.45,91.87 390.48,542.33 416.43,536.5 449,523.66 449,496 449,496 449,496 449,134 449,104.46 365.34,95.135 305.7,92.237"];
	reference -> pindel_cat	[_draw_="c 7 -#000000 B 7 357.71 538.52 355.26 525.27 348.7 499.65 333 485 321.53 474.29 306.55 466.95 291.69 461.91 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 292.81 459.69 285.39 459.93 291.34 464.37 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 366 493.1 0 40 9 -reference ",
		label=reference,
		lp="366,495",
		pos="e,283.95,459.48 357.71,538.52 355.26,525.27 348.7,499.65 333,485 321.53,474.29 306.55,466.95 291.69,461.91"];
	reference -> region_filter	[_draw_="c 7 -#000000 B 22 357.36 538.64 355.71 530.17 353.11 516.69 351 505 344.43 468.62 357.77 453.59 337 423 323.55 403.2 313.37 403.51 \
291 395 272.42 387.94 259.74 402.26 247 387 239.6 378.13 247 372.56 247 361 247 361 247 361 247 269 247 260.31 247 250.63 247 242.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 249.45 242.76 247 235.76 244.55 242.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 267 380.6 0 40 9 -reference ",
		label=reference,
		lp="267,382.5",
		pos="e,247,234.24 357.36,538.64 355.71,530.17 353.11,516.69 351,505 344.43,468.62 357.77,453.59 337,423 323.55,403.2 313.37,403.51 291,\
395 272.42,387.94 259.74,402.26 247,387 239.6,378.13 247,372.56 247,361 247,361 247,361 247,269 247,260.31 247,250.63 247,242.65"];
	normal_bam -> pindel_cat	[_draw_="c 7 -#000000 B 7 214.52 538.79 217.97 530.44 223.1 517.05 226 505 228.97 492.63 230.76 478.34 231.78 467.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 234.21 467.84 232.36 460.66 229.33 467.43 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 254.5 493.1 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="254.5,495",
		pos="e,232.49,459.15 214.52,538.79 217.97,530.44 223.1,517.05 226,505 228.97,492.63 230.76,478.34 231.78,467.57"];
	bgzip	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 268.5 305.5 268.5 324.5 333.5 324.5 333.5 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 301 312.5 0 49 9 -bgzip VCF ",
		height=0.27778,
		label="bgzip VCF",
		pos="301,315",
		rects="268.5,305.5,333.5,324.5",
		width=0.90278];
	somaticfilter -> bgzip	[_draw_="c 7 -#000000 B 4 315.53 350.71 313.29 345.36 310.3 338.22 307.62 331.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 310.01 331.17 305.04 325.66 305.49 333.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 317.5 335.6 0 13 4 -file ",
		label=file,
		lp="317.5,337.5",
		pos="e,304.46,324.27 315.53,350.71 313.29,345.36 310.3,338.22 307.62,331.81"];
	filter -> filtered_vcf	[_draw_="c 7 -#000000 B 4 239.09 80.71 233.54 74.88 225.96 66.93 219.46 60.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 221.53 58.74 214.93 55.36 217.98 62.12 ",
		pos="e,213.88,54.265 239.09,80.709 233.54,74.879 225.96,66.934 219.46,60.117"];
	filter -> unfiltered_vcf	[_draw_="c 7 -#000000 B 4 254.71 80.71 260.14 74.88 267.53 66.93 273.87 60.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 275.31 62.17 278.28 55.37 271.72 58.83 ",
		pos="e,279.31,54.265 254.71,80.709 260.14,74.879 267.53,66.934 273.87,60.117"];
	cat_all	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 239.5 395.5 239.5 414.5 288.5 414.5 288.5 395.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 264 402.5 0 33 7 -cat_all ",
		height=0.27778,
		label=cat_all,
		pos="264,405",
		rects="239.5,395.5,288.5,414.5",
		width=0.68056];
	pindel_cat -> cat_all	[_draw_="c 7 -#000000 B 7 231.76 440.66 231.38 435.23 231.74 428.22 235 423 235.68 421.92 236.45 420.9 237.3 419.93 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 238.88 421.8 242.6 415.38 235.69 418.08 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 287.5 425.6 0 105 22 -chromosome_pindel_outs ",
		label=chromosome_pindel_outs,
		lp="287.5,427.5",
		pos="e,243.75,414.4 231.76,440.66 231.38,435.23 231.74,428.22 235,423 235.68,421.92 236.45,420.9 237.3,419.93"];
	remove_end_tags	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 182.5 170.5 182.5 189.5 311.5 189.5 311.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 247 177.5 0 113 20 -remove END INFO tags ",
		height=0.27778,
		label="remove END INFO tags",
		pos="247,180",
		rects="182.5,170.5,311.5,189.5",
		width=1.7917];
	reindex	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 216 125.5 216 144.5 278 144.5 278 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 247 132.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="247,135",
		rects="216,125.5,278,144.5",
		width=0.86111];
	remove_end_tags -> reindex	[_draw_="c 7 -#000000 B 4 247 170.71 247 165.59 247 158.85 247 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 249.45 152.78 247 145.78 244.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 253.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="253.5,157.5",
		pos="e,247,144.27 247,170.71 247,165.59 247,158.85 247,152.67"];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 257 260.5 257 279.5 319 279.5 319 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 288 267.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="288,270",
		rects="257,260.5,319,279.5",
		width=0.86111];
	bgzip -> index	[_draw_="c 7 -#000000 B 4 298.49 305.71 296.91 300.47 294.81 293.53 292.91 287.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 295.31 286.71 290.94 280.71 290.62 288.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 301.5 290.6 0 13 3 -vcf ",
		label=vcf,
		lp="301.5,292.5",
		pos="e,290.5,279.27 298.49,305.71 296.91,300.47 294.81,293.53 292.91,287.24"];
	get_chromosome_list -> pindel_cat	[_draw_="c 7 -#000000 B 7 166.58 485.64 168.08 479.92 170.89 472.58 176 468 177.96 466.24 180.1 464.67 182.36 463.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 183.07 465.65 188.1 460.2 180.77 461.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 203 470.6 0 54 10 -chromosome ",
		label=chromosome,
		lp="203,472.5",
		pos="e,189.43,459.49 166.58,485.64 168.08,479.92 170.89,472.58 176,468 177.96,466.24 180.1,464.67 182.36,463.26"];
	cat_all -> somaticfilter	[_draw_="c 7 -#000000 B 7 276.35 395.54 280.13 392.87 284.28 389.87 288 387 293.05 383.11 298.41 378.71 303.23 374.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 304.5 376.79 308.24 370.39 301.32 373.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 347 380.6 0 98 21 -pindel_output_summary ",
		label=pindel_output_summary,
		lp="347,382.5",
		pos="e,309.39,369.4 276.35,395.54 280.13,392.87 284.28,389.87 288,387 293.05,383.11 298.41,378.71 303.23,374.65"];
	reindex -> filter	[_draw_="c 7 -#000000 B 4 247 125.71 247 120.59 247 113.85 247 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 249.45 107.78 247 100.78 244.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 253.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="253.5,112.5",
		pos="e,247,99.265 247,125.71 247,120.59 247,113.85 247,107.67"];
	region_filter -> remove_end_tags	[_draw_="c 7 -#000000 B 4 247 215.71 247 210.59 247 203.85 247 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 249.45 197.78 247 190.78 244.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 253.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="253.5,202.5",
		pos="e,247,189.27 247,215.71 247,210.59 247,203.85 247,197.67"];
	index -> region_filter	[_draw_="c 7 -#000000 B 4 280.09 260.71 274.54 254.88 266.96 246.93 260.46 240.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 262.53 238.74 255.93 235.36 258.98 242.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 277.5 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="277.5,247.5",
		pos="e,254.88,234.27 280.09,260.71 274.54,254.88 266.96,246.93 260.46,240.12"];
}