digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 368 488.5 368 488.5 0 ",
		bb="0,0,488.5,368",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
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	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 305 8 360 384 360 384 305 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 348 0 84 15 -Workflow Inputs ",
			bb="8,305,384,360",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,350.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		germline_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 216 313.5 216 332.5 296 332.5 296 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 256 320.5 0 64 12 -germline_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=germline_vcf,
			pos="256,323",
			rects="216,313.5,296,332.5",
			width=1.1111];
		bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 313.5 16 332.5 54 332.5 54 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 35 320.5 0 22 3 -bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=bam,
			pos="35,323",
			rects="16,313.5,54,332.5",
			width=0.52778];
		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 58.5 313.5 58.5 332.5 121.5 332.5 121.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 90 320.5 0 47 9 -reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference,
			pos="90,323",
			rects="58.5,313.5,121.5,332.5",
			width=0.875];
		somatic_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 300 313.5 300 332.5 376 332.5 376 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 338 320.5 0 60 11 -somatic_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=somatic_vcf,
			pos="338,323",
			rects="300,313.5,376,332.5",
			width=1.0556];
		reference_dict	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 126 313.5 126 332.5 212 332.5 212 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 169 320.5 0 70 14 -reference_dict ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_dict,
			pos="169,323",
			rects="126,313.5,212,332.5",
			width=1.1944];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 16 8 16 63 124 63 124 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 70 15 0 92 16 -Workflow Outputs ",
			bb="16,8,124,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="70,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		phased_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 34 35.5 34 54.5 106 54.5 106 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 70 42.5 0 56 10 -phased_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=phased_vcf,
			pos="70,45",
			rects="34,35.5,106,54.5",
			width=1];
	}
	combine_variants	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 197.5 260.5 197.5 279.5 488.5 279.5 488.5 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 343 267.5 0 275 52 -Combine germline and somatic vcf for pVACseq phasing ",
		height=0.27778,
		label="Combine germline and somatic vcf for pVACseq phasing",
		pos="343,270",
		rects="197.5,260.5,488.5,279.5",
		width=4.0417];
	germline_vcf -> combine_variants	[_draw_="c 7 -#000000 B 7 261.67 313.53 267.26 305.82 276.46 294.65 287 288 290.18 285.99 293.61 284.21 297.15 282.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 298.03 284.92 303.62 280.05 296.21 280.37 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 313 290.6 0 52 12 -germline_vcf ",
		label=germline_vcf,
		lp="313,292.5",
		pos="e,305.03,279.49 261.67,313.53 267.26,305.82 276.46,294.65 287,288 290.18,285.99 293.61,284.21 297.15,282.63"];
	phase_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 9.5 125.5 9.5 144.5 130.5 144.5 130.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 70 132.5 0 105 19 -Read-backed phasing ",
		height=0.27778,
		label="Read-backed phasing",
		pos="70,135",
		rects="9.5,125.5,130.5,144.5",
		width=1.6806];
	bam -> phase_vcf	[_draw_="c 7 -#000000 B 10 35.79 313.71 36.68 303.62 38 286.08 38 271 38 271 38 271 38 179 38 167.58 45.35 157.23 53.01 149.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 54.2 151.78 57.69 145.24 50.88 148.17 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 47.5 223.1 0 19 3 -bam ",
		label=bam,
		lp="47.5,225",
		pos="e,58.808,144.21 35.788,313.71 36.677,303.62 38,286.08 38,271 38,271 38,271 38,179 38,167.58 45.353,157.23 53.01,149.54"];
	reference -> phase_vcf	[_draw_="c 7 -#000000 B 10 84.53 313.73 78.61 303.95 70 286.98 70 271 70 271 70 271 70 179 70 170.31 70 160.63 70 152.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 72.45 152.76 70 145.76 67.55 152.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 90 223.1 0 40 9 -reference ",
		label=reference,
		lp="90,225",
		pos="e,70,144.24 84.535,313.73 78.613,303.95 70,286.98 70,271 70,271 70,271 70,179 70,170.31 70,160.63 70,152.65"];
	reference -> combine_variants	[_draw_="c 7 -#000000 B 7 104.93 313.53 110.99 310.42 118.17 307.14 125 305 161.87 293.45 203.53 285.73 240.49 280.61 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 240.67 283.05 247.28 279.69 240.02 278.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 209 290.6 0 40 9 -reference ",
		label=reference,
		lp="209,292.5",
		pos="e,248.78,279.49 104.93,313.53 110.99,310.42 118.17,307.14 125,305 161.87,293.45 203.53,285.73 240.49,280.61"];
	somatic_vcf -> combine_variants	[_draw_="c 7 -#000000 B 4 338.83 313.58 339.52 306.52 340.53 296.24 341.38 287.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 343.8 287.98 342.04 280.77 338.92 287.5 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 365.5 290.6 0 49 11 -somatic_vcf ",
		label=somatic_vcf,
		lp="365.5,292.5",
		pos="e,342.19,279.26 338.83,313.58 339.52,306.52 340.53,296.24 341.38,287.55"];
	sort	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 114.5 215.5 114.5 234.5 173.5 234.5 173.5 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 144 222.5 0 43 8 -Sort VCF ",
		height=0.27778,
		label="Sort VCF",
		pos="144,225",
		rects="114.5,215.5,173.5,234.5",
		width=0.81944];
	reference_dict -> sort	[_draw_="c 7 -#000000 B 7 159.96 313.68 152.18 305.86 141.51 293.38 137 280 132.85 267.7 135.16 253.06 138.2 242.13 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 140.46 243.13 140.23 235.72 135.78 241.65 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 166.5 268.1 0 59 14 -reference_dict ",
		label=reference_dict,
		lp="166.5,270",
		pos="e,140.69,234.27 159.96,313.68 152.18,305.86 141.51,293.38 137,280 132.85,267.7 135.16,253.06 138.2,242.13"];
	bgzip_and_index_phased_vcf	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 12 80.5 12 99.5 128 99.5 128 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 70 87.5 0 100 19 -bgzip and index VCF ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="bgzip and index VCF",
		pos="70,90",
		rects="12,80.5,128,99.5",
		width=1.6111];
	phase_vcf -> bgzip_and_index_phased_vcf	[_draw_="c 7 -#000000 B 4 70 125.71 70 120.59 70 113.85 70 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 72.45 107.78 70 100.78 67.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 76.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="76.5,112.5",
		pos="e,70,99.265 70,125.71 70,120.59 70,113.85 70,107.67"];
	combine_variants -> sort	[_draw_="c 7 -#000000 B 4 303.68 260.5 268.14 252.82 216.17 241.59 181.27 234.05 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 182.06 231.72 174.7 232.63 181.03 236.51 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 267.5 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="267.5,247.5",
		pos="e,173.22,232.31 303.68,260.5 268.14,252.82 216.17,241.59 181.27,234.05"];
	bgzip_and_index_phased_vcf -> phased_vcf	[_draw_="c 7 -#000000 B 4 70 80.71 70 75.59 70 68.85 70 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 72.45 62.78 70 55.78 67.55 62.78 ",
		pos="e,70,54.265 70,80.709 70,75.593 70,68.848 70,62.666"];
	bgzip_and_index	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 81 170.5 81 189.5 197 189.5 197 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 139 177.5 0 100 19 -bgzip and index VCF ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="bgzip and index VCF",
		pos="139,180",
		rects="81,170.5,197,189.5",
		width=1.6111];
	bgzip_and_index -> phase_vcf	[_draw_="c 7 -#000000 B 4 125.37 170.5 115.44 164.32 101.83 155.84 90.59 148.83 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 92.13 146.9 84.89 145.28 89.53 151.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 117.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="117.5,157.5",
		pos="e,83.604,144.48 125.37,170.5 115.44,164.32 101.83,155.84 90.588,148.83"];
	sort -> bgzip_and_index	[_draw_="c 7 -#000000 B 4 143.04 215.71 142.44 210.59 141.66 203.85 140.94 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 143.38 197.44 140.14 190.77 138.51 198 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 148.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="148.5,202.5",
		pos="e,139.96,189.27 143.04,215.71 142.44,210.59 141.66,203.85 140.94,197.67"];
}