digraph workflow {
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		bb="0,0,1397,233",
		bgcolor="#eeeeee",
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		fontcolor=black,
		fontname=Helvetica,
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			lheight=0.15,
			lp="396,215.5",
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		bait_intervals	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 587.5 178.5 587.5 197.5 670.5 197.5 670.5 178.5 ",
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			rects="587.5,178.5,670.5,197.5",
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			rects="675,178.5,749,197.5",
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			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 778 185.5 0 34 6 -access ",
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		diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 807.5 178.5 807.5 197.5 864.5 197.5 864.5 178.5 ",
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			rects="807.5,178.5,864.5,197.5",
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		normal_cram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 354.5 178.5 354.5 197.5 435.5 197.5 435.5 178.5 ",
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			fillcolor="#94DDF4",
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			pos="395,188",
			rects="354.5,178.5,435.5,197.5",
			width=1.125];
		method	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 869 178.5 869 197.5 923 197.5 923 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 896 185.5 0 38 6 -method ",
			fillcolor="#94DDF4",
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			pos="896,188",
			rects="869,178.5,923,197.5",
			width=0.75];
		drop_low_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 927.5 178.5 927.5 197.5 1038.5 197.5 1038.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 983 185.5 0 95 17 -drop_low_coverage ",
			fillcolor="#94DDF4",
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			pos="983,188",
			rects="927.5,178.5,1038.5,197.5",
			width=1.5417];
		tumor_cram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 507 178.5 507 197.5 583 197.5 583 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 545 185.5 0 60 10 -tumor_cram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_cram,
			pos="545,188",
			rects="507,178.5,583,197.5",
			width=1.0556];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 8 8 63 1389 63 1389 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 62 15 0 92 16 -Workflow Outputs ",
			bb="8,8,1389,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="62,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
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		intervals_antitarget	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 35.5 16.5 54.5 129.5 54.5 129.5 35.5 ",
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			fillcolor="#94DDF4",
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			label=intervals_antitarget,
			pos="73,45",
			rects="16.5,35.5,129.5,54.5",
			width=1.5694];
		tumor_antitarget_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 133.5 35.5 133.5 54.5 282.5 54.5 282.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 208 42.5 0 133 25 -tumor_antitarget_coverage ",
			fillcolor="#94DDF4",
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			label=tumor_antitarget_coverage,
			pos="208,45",
			rects="133.5,35.5,282.5,54.5",
			width=2.0694];
		normal_antitarget_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 286.5 35.5 286.5 54.5 441.5 54.5 441.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 364 42.5 0 139 26 -normal_antitarget_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_antitarget_coverage,
			pos="364,45",
			rects="286.5,35.5,441.5,54.5",
			width=2.1528];
		tumor_target_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 445.5 35.5 445.5 54.5 576.5 54.5 576.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 511 42.5 0 115 21 -tumor_target_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_target_coverage,
			pos="511,45",
			rects="445.5,35.5,576.5,54.5",
			width=1.8194];
		cn_scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 580.5 35.5 580.5 54.5 671.5 54.5 671.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 626 42.5 0 75 15 -cn_scatter_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_scatter_plot,
			pos="626,45",
			rects="580.5,35.5,671.5,54.5",
			width=1.2639];
		tumor_bin_level_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 676 35.5 676 54.5 804 54.5 804 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 740 42.5 0 112 22 -tumor_bin_level_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bin_level_ratios,
			pos="740,45",
			rects="676,35.5,804,54.5",
			width=1.7778];
		normal_target_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 808 35.5 808 54.5 944 54.5 944 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 876 42.5 0 120 22 -normal_target_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_target_coverage,
			pos="876,45",
			rects="808,35.5,944,54.5",
			width=1.8889];
		reference_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 948.5 35.5 948.5 54.5 1061.5 54.5 1061.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1005 42.5 0 97 18 -reference_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_coverage,
			pos="1005,45",
			rects="948.5,35.5,1061.5,54.5",
			width=1.5694];
		tumor_segmented_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1065.5 35.5 1065.5 54.5 1204.5 54.5 1204.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1135 42.5 0 123 22 -tumor_segmented_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_segmented_ratios,
			pos="1135,45",
			rects="1065.5,35.5,1204.5,54.5",
			width=1.9306];
		cn_diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1209 35.5 1209 54.5 1283 54.5 1283 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1246 42.5 0 58 10 -cn_diagram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_diagram,
			pos="1246,45",
			rects="1209,35.5,1283,54.5",
			width=1.0278];
		intervals_target	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1287 35.5 1287 54.5 1381 54.5 1381 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1334 42.5 0 78 16 -intervals_target ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=intervals_target,
			pos="1334,45",
			rects="1287,35.5,1381,54.5",
			width=1.3056];
	}
	normal_cram_to_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 309.5 125.5 309.5 144.5 462.5 144.5 462.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 386 132.5 0 137 25 -samtools view cram to bam ",
		height=0.27778,
		label="samtools view cram to bam",
		pos="386,135",
		rects="309.5,125.5,462.5,144.5",
		width=2.125];
	reference -> normal_cram_to_bam	[_draw_="c 7 -#000000 B 7 455.83 178.62 447.3 173.85 436.49 167.7 427 162 420 157.79 412.42 153.04 405.7 148.77 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 407.32 146.89 400.1 145.18 404.67 151.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 447 155.6 0 40 9 -reference ",
		label=reference,
		lp="447,157.5",
		pos="e,398.83,144.36 455.83,178.62 447.3,173.85 436.49,167.7 427,162 420,157.79 412.42,153.04 405.7,148.77"];
	tumor_cram_to_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 515.5 125.5 515.5 144.5 668.5 144.5 668.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 592 132.5 0 137 25 -samtools view cram to bam ",
		height=0.27778,
		label="samtools view cram to bam",
		pos="592,135",
		rects="515.5,125.5,668.5,144.5",
		width=2.125];
	reference -> tumor_cram_to_bam	[_draw_="c 7 -#000000 B 7 482.48 178.66 493.44 171.03 510.66 159.92 527 153 532.46 150.69 538.32 148.62 544.21 146.79 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 544.72 149.2 550.75 144.88 543.35 144.49 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 547 155.6 0 40 9 -reference ",
		label=reference,
		lp="547,157.5",
		pos="e,552.2,144.45 482.48,178.66 493.44,171.03 510.66,159.92 527,153 532.46,150.69 538.32,148.62 544.21,146.79"];
	run_cnvkit	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 706 80.5 706 99.5 774 99.5 774 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 740 87.5 0 52 10 -run_cnvkit ",
		height=0.27778,
		label=run_cnvkit,
		pos="740,90",
		rects="706,80.5,774,99.5",
		width=0.94444];
	reference -> run_cnvkit	[_draw_="c 7 -#000000 B 7 468.38 178.5 464.88 165.22 460.54 139.56 474 125 503.39 93.19 630.55 89.66 697.85 90.1 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 697.61 92.55 704.63 90.17 697.65 87.65 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 494 133.1 0 40 9 -reference ",
		label=reference,
		lp="494,135",
		pos="e,706.14,90.181 468.38,178.5 464.88,165.22 460.54,139.56 474,125 503.39,93.195 630.55,89.661 697.85,90.104"];
	bait_intervals -> run_cnvkit	[_draw_="c 7 -#000000 B 10 639.14 178.61 648.08 170.74 660.91 158.23 669 145 673.91 136.97 669.86 132.14 676 125 684.19 115.46 695.74 108.19 \
706.78 102.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 707.53 105.21 712.91 100.11 705.52 100.75 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 703.5 133.1 0 55 14 -bait_intervals ",
		label=bait_intervals,
		lp="703.5,135",
		pos="e,714.29,99.489 639.14,178.61 648.08,170.74 660.91,158.23 669,145 673.91,136.97 669.86,132.14 676,125 684.19,115.46 695.74,108.19 \
706.78,102.87"];
	scatter_plot -> run_cnvkit	[_draw_="c 7 -#000000 B 7 716.91 178.61 721.53 170.34 728.28 157.21 732 145 735.72 132.8 737.74 118.5 738.82 107.69 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 741.26 107.91 739.41 100.72 736.37 107.49 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 760.5 133.1 0 49 12 -scatter_plot ",
		label=scatter_plot,
		lp="760.5,135",
		pos="e,739.54,99.216 716.91,178.61 721.53,170.34 728.28,157.21 732,145 735.72,132.8 737.74,118.5 738.82,107.69"];
	access -> run_cnvkit	[_draw_="c 7 -#000000 B 7 781.85 178.87 787.1 166.53 794.9 142.64 786 125 781.62 116.31 773.85 109.29 765.93 103.94 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 767.24 101.87 760 100.28 764.67 106.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 804.5 133.1 0 29 6 -access ",
		label=access,
		lp="804.5,135",
		pos="e,758.71,99.488 781.85,178.87 787.1,166.53 794.9,142.64 786,125 781.62,116.31 773.85,109.29 765.93,103.94"];
	diagram -> run_cnvkit	[_draw_="c 7 -#000000 B 7 836.08 178.72 835.77 165.75 833.34 140.5 820 125 810.03 113.42 795.43 105.68 781.43 100.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 782.59 98.36 775.18 98.45 781.03 103.01 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 847 133.1 0 34 7 -diagram ",
		label=diagram,
		lp="847,135",
		pos="e,773.74,97.971 836.08,178.72 835.77,165.75 833.34,140.5 820,125 810.03,113.42 795.43,105.68 781.43,100.56"];
	normal_cram -> normal_cram_to_bam	[_draw_="c 7 -#000000 B 4 393.51 178.58 392.27 171.52 390.45 161.24 388.92 152.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 391.35 152.22 387.72 145.76 386.53 153.07 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 400.5 155.6 0 21 4 -cram ",
		label=cram,
		lp="400.5,157.5",
		pos="e,387.46,144.26 393.51,178.58 392.27,171.52 390.45,161.24 388.92,152.55"];
	method -> run_cnvkit	[_draw_="c 7 -#000000 B 7 894.15 178.87 890.72 165.62 882.11 139.44 865 125 841.89 105.5 808.58 97.1 782.15 93.53 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 782.58 91.11 775.34 92.71 782 95.98 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 896 133.1 0 32 6 -method ",
		label=method,
		lp="896,135",
		pos="e,773.84,92.527 894.15,178.87 890.72,165.62 882.11,139.44 865,125 841.89,105.5 808.58,97.103 782.15,93.527"];
	drop_low_coverage -> run_cnvkit	[_draw_="c 7 -#000000 B 7 976.13 178.83 964.51 165.53 939.61 139.27 913 125 872.04 103.04 818.82 95.17 782.28 92.4 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 782.49 89.96 775.34 91.93 782.16 94.84 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 980.5 133.1 0 79 17 -drop_low_coverage ",
		label=drop_low_coverage,
		lp="980.5,135",
		pos="e,773.83,91.825 976.13,178.83 964.51,165.53 939.61,139.27 913,125 872.04,103.04 818.82,95.166 782.28,92.397"];
	tumor_cram -> tumor_cram_to_bam	[_draw_="c 7 -#000000 B 4 552.76 178.58 559.81 170.93 570.36 159.48 578.74 150.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 580.42 152.19 583.36 145.38 576.81 148.87 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 585.5 155.6 0 21 4 -cram ",
		label=cram,
		lp="585.5,157.5",
		pos="e,584.38,144.26 552.76,178.58 559.81,170.93 570.36,159.48 578.74,150.39"];
	normal_cram_to_bam -> run_cnvkit	[_draw_="c 7 -#000000 B 7 392.92 125.56 398.45 119.47 406.8 111.71 416 108 441.47 97.73 616.22 93.24 697.98 91.69 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 697.6 94.14 704.55 91.56 697.51 89.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 441.5 110.6 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="441.5,112.5",
		pos="e,706.07,91.535 392.92,125.56 398.45,119.47 406.8,111.71 416,108 441.47,97.729 616.22,93.24 697.98,91.685"];
	tumor_cram_to_bam -> run_cnvkit	[_draw_="c 7 -#000000 B 7 600.74 125.58 607.39 119.68 617.08 112.13 627 108 649.32 98.72 675.98 94.42 697.81 92.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 697.92 94.91 704.71 91.92 697.54 90.03 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 650 110.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="650,112.5",
		pos="e,706.22,91.805 600.74,125.58 607.39,119.68 617.08,112.13 627,108 649.32,98.719 675.98,94.422 697.81,92.466"];
	run_cnvkit -> intervals_antitarget	[_draw_="c 7 -#000000 B 7 706.18 88.57 595.61 86.99 245.54 80.7 134 63 124.86 61.55 115.13 59.21 106.19 56.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 107.1 54.44 99.69 54.85 105.73 59.15 ",
		pos="e,98.237,54.432 706.18,88.567 595.61,86.991 245.54,80.696 134,63 124.86,61.549 115.13,59.213 106.19,56.731"];
	run_cnvkit -> tumor_antitarget_coverage	[_draw_="c 7 -#000000 B 7 706.02 88.84 630.38 88.09 442.54 84.07 287 63 274.8 61.35 261.68 58.83 249.71 56.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 250.47 53.9 243.11 54.77 249.41 58.68 ",
		pos="e,241.63,54.437 706.02,88.84 630.38,88.092 442.54,84.07 287,63 274.8,61.347 261.68,58.83 249.71,56.236"];
	run_cnvkit -> normal_antitarget_coverage	[_draw_="c 7 -#000000 B 7 706.34 87.3 651.56 84.24 539.78 76.82 446 63 433.73 61.19 420.53 58.7 408.38 56.18 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 409 53.81 401.65 54.76 407.99 58.6 ",
		pos="e,400.17,54.443 706.34,87.299 651.56,84.244 539.78,76.82 446,63 433.73,61.192 420.53,58.701 408.38,56.183"];
	run_cnvkit -> tumor_target_coverage	[_draw_="c 7 -#000000 B 7 706.06 84.21 673.77 79.48 623.9 71.7 581 63 571.52 61.08 561.38 58.76 551.84 56.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 552.5 54.11 545.12 54.83 551.34 58.87 ",
		pos="e,543.65,54.474 706.06,84.215 673.77,79.483 623.9,71.704 581,63 571.52,61.077 561.38,58.764 551.84,56.472"];
	run_cnvkit -> cn_scatter_plot	[_draw_="c 7 -#000000 B 4 717.48 80.5 699.99 73.91 675.57 64.7 656.36 57.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 657.31 55.19 649.89 55.01 655.58 59.77 ",
		pos="e,648.48,54.478 717.48,80.505 699.99,73.908 675.57,64.696 656.36,57.45"];
	run_cnvkit -> tumor_bin_level_ratios	[_draw_="c 7 -#000000 B 4 740 80.71 740 75.59 740 68.85 740 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 742.45 62.78 740 55.78 737.55 62.78 ",
		pos="e,740,54.265 740,80.709 740,75.593 740,68.848 740,62.666"];
	run_cnvkit -> normal_target_coverage	[_draw_="c 7 -#000000 B 4 766.87 80.5 788.2 73.76 818.17 64.28 841.31 56.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 841.81 59.38 847.74 54.93 840.33 54.71 ",
		pos="e,849.19,54.478 766.87,80.505 788.2,73.761 818.17,64.284 841.31,56.967"];
	run_cnvkit -> reference_coverage	[_draw_="c 7 -#000000 B 7 773.99 86.26 814.87 82.61 885.42 75.15 945 63 953.27 61.31 962.08 59.08 970.32 56.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 970.82 59.18 976.87 54.9 969.47 54.47 ",
		pos="e,978.33,54.484 773.99,86.262 814.87,82.607 885.42,75.148 945,63 953.27,61.313 962.08,59.076 970.32,56.78"];
	run_cnvkit -> tumor_segmented_ratios	[_draw_="c 7 -#000000 B 7 773.57 87.93 832.33 85.69 957.54 79.29 1062 63 1072.86 61.31 1084.5 58.88 1095.23 56.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1095.51 58.84 1101.75 54.83 1094.37 54.07 ",
		pos="e,1103.2,54.481 773.57,87.928 832.33,85.686 957.54,79.288 1062,63 1072.9,61.307 1084.5,58.88 1095.2,56.388"];
	run_cnvkit -> cn_diagram	[_draw_="c 7 -#000000 B 7 773.93 88.58 866.67 87.2 1122.92 81.74 1205 63 1210.55 61.73 1216.32 59.78 1221.71 57.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1222.38 60.02 1227.87 55.03 1220.47 55.51 ",
		pos="e,1229.3,54.44 773.93,88.58 866.67,87.196 1122.9,81.739 1205,63 1210.6,61.732 1216.3,59.78 1221.7,57.643"];
	run_cnvkit -> intervals_target	[_draw_="c 7 -#000000 B 10 773.93 87.91 844.39 85.59 1011.72 79.71 1152 72 1210.27 68.8 1225.75 74.32 1283 63 1290.24 61.57 1297.87 59.4 \
1304.96 57.09 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1305.72 59.42 1311.55 54.83 1304.14 54.78 ",
		pos="e,1313,54.338 773.93,87.914 844.39,85.59 1011.7,79.712 1152,72 1210.3,68.797 1225.7,74.318 1283,63 1290.2,61.569 1297.9,59.4 1305,\
57.086"];
}