digraph workflow {
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			rects="220,313.5,306,332.5",
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			width=1.875];
		sample_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 313.5 16 332.5 102 332.5 102 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 59 320.5 0 70 11 -sample_name ",
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			label=sample_name,
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			rects="16,313.5,102,332.5",
			width=1.1944];
	}
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			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="901,17.5",
			lwidth=1.28,
			rank=same,
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			width=0.44444];
		cpg_bedgraph	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 980.5 35.5 980.5 54.5 1065.5 54.5 1065.5 35.5 ",
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			label=cpg_bedgraph,
			pos="1023,45",
			rects="980.5,35.5,1065.5,54.5",
			width=1.1806];
		cram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 855.5 35.5 855.5 54.5 896.5 54.5 896.5 35.5 ",
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			fillcolor="#94DDF4",
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			label=cram,
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		cpgs	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 937.5 35.5 937.5 54.5 976.5 54.5 976.5 35.5 ",
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			rects="937.5,35.5,976.5,54.5",
			width=0.54167];
	}
	vcf2bed	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 918 125.5 918 144.5 1300 144.5 1300 125.5 ",
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		pos="1109,135",
		rects="918,125.5,1300,144.5",
		width=5.3056];
	reference_index -> vcf2bed	[_draw_="c 7 -#000000 B 10 1109 313.7 1109 303.6 1109 286.05 1109 271 1109 271 1109 271 1109 179 1109 170.31 1109 160.63 1109 152.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1111.45 152.76 1109 145.76 1106.55 152.76 ",
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	bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 539.5 260.5 539.5 279.5 782.5 279.5 782.5 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 661 267.5 0 227 44 -bam to trimmed fastqs and biscuit alignments ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="bam to trimmed fastqs and biscuit alignments",
		pos="661,270",
		rects="539.5,260.5,782.5,279.5",
		width=3.375];
	reference_index -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 13 1087.99 313.61 1078.92 310.35 1068.08 306.94 1058 305 997.23 293.34 978.14 315.23 919 297 911.57 294.71 911.42 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 791.05 272.26 783.94 274.35 790.8 277.15 ",
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	bam_to_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 798 170.5 798 189.5 938 189.5 938 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 868 177.5 0 124 22 -BAM to CRAM conversion ",
		height=0.27778,
		label="BAM to CRAM conversion",
		pos="868,180",
		rects="798,170.5,938,189.5",
		width=1.9444];
	reference_index -> bam_to_cram	[_draw_="c 7 -#000000 B 10 1095.73 313.51 1077.14 301.27 1042.86 277.31 1018 252 997.07 230.69 1003.57 213.44 978 198 971.85 194.28 959.98 \
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		label=reference,
		lp="1038,247.5",
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	pileup	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 980.5 170.5 980.5 189.5 1063.5 189.5 1063.5 170.5 ",
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		height=0.27778,
		label="Biscuit pileup",
		pos="1022,180",
		rects="980.5,170.5,1063.5,189.5",
		width=1.1528];
	reference_index -> pileup	[_draw_="c 7 -#000000 B 7 1103.81 313.84 1095.53 300.81 1078.87 274.48 1065 252 1053.25 232.96 1039.94 210.9 1031.28 196.49 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1033.47 195.37 1027.77 190.63 1029.27 197.9 ",
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		label=reference,
		lp="1085,247.5",
		pos="e,1027,189.33 1103.8,313.84 1095.5,300.81 1078.9,274.48 1065,252 1053.3,232.96 1039.9,210.9 1031.3,196.49"];
	bedgraph_to_bigwig	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1025 80.5 1025 99.5 1193 99.5 1193 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1109 87.5 0 152 29 -bedGraph to bigwig conversion ",
		height=0.27778,
		label="bedGraph to bigwig conversion",
		pos="1109,90",
		rects="1025,80.5,1193,99.5",
		width=2.3333];
	reference_sizes -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 10 1253.49 316.08 1279.6 309.86 1307 297.11 1307 271 1307 271 1307 271 1307 134 1307 110.46 1252.88 99.78 1201.23 \
94.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1201.67 92.53 1194.48 94.36 1201.24 97.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1339.5 200.6 0 65 15 -reference_sizes ",
		label=reference_sizes,
		lp="1339.5,202.5",
		pos="e,1193,94.223 1253.5,316.08 1279.6,309.86 1307,297.11 1307,271 1307,271 1307,271 1307,134 1307,110.46 1252.9,99.781 1201.2,94.949"];
	trimming_min_readlength -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 537.35 313.61 552.32 306.17 575.25 295.36 596 288 602.48 285.7 609.42 283.56 616.27 281.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 616.66 284.06 622.77 279.85 615.37 279.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 628 290.6 0 64 14 -min_readlength ",
		label=min_readlength,
		lp="628,292.5",
		pos="e,624.23,279.46 537.35,313.61 552.32,306.17 575.25,295.36 596,288 602.48,285.7 609.42,283.56 616.27,281.63"];
	instrument_data_bams -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 4 661 313.58 661 306.52 661 296.24 661 287.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 663.45 287.78 661 280.78 658.55 287.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 670.5 290.6 0 19 3 -bam ",
		label=bam,
		lp="670.5,292.5",
		pos="e,661,279.26 661,313.58 661,306.52 661,296.24 661,287.55"];
	trimming_adapter_trim_end -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 780.96 313.54 766.86 308.74 748.92 302.6 733 297 719.53 292.26 704.68 286.92 691.98 282.32 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 692.83 280.02 685.41 279.93 691.15 284.62 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 769 290.6 0 72 16 -adapter_trim_end ",
		label=adapter_trim_end,
		lp="769,292.5",
		pos="e,683.99,279.41 780.96,313.54 766.86,308.74 748.92,302.6 733,297 719.53,292.26 704.68,286.92 691.98,282.32"];
	trimming_adapter_min_overlap -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 13 930.44 313.52 915.51 310.62 898.53 307.48 883 305 855.56 300.61 847.66 304.82 821 297 812.03 294.37 810.98 290.59 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 772.64 278.57 765.31 279.74 771.77 283.39 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 864 290.6 0 86 19 -adapter_min_overlap ",
		label=adapter_min_overlap,
		lp="864,292.5",
		pos="e,763.82,279.47 930.44,313.52 915.51,310.62 898.53,307.48 883,305 855.56,300.61 847.66,304.82 821,297 812.03,294.37 810.98,290.59 \
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	trimming_adapters -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 10 188.48 313.52 198.36 310.61 209.63 307.48 220 305 259.17 295.64 269.01 292.76 309 288 382.26 279.28 464.61 275 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 327.5 290.6 0 37 8 -adapters ",
		label=adapters,
		lp="327.5,292.5",
		pos="e,539.69,272.66 188.48,313.52 198.36,310.61 209.63,307.48 220,305 259.17,295.64 269.01,292.76 309,288 382.26,279.28 464.61,275 531.23,\
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	read_group_id -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 283.8 313.54 291.87 310.5 301.27 307.27 310 305 381.74 286.34 464.13 277.72 531.05 273.82 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 531.18 276.27 538.04 273.43 530.91 271.38 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 414 290.6 0 58 13 -read_group_id ",
		label=read_group_id,
		lp="414,292.5",
		pos="e,539.55,273.35 283.8,313.54 291.87,310.5 301.27,307.27 310,305 381.74,286.34 464.13,277.72 531.05,273.82"];
	trimming_max_uncalled -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 407.65 313.56 435.44 305.91 478.24 294.84 516 288 531.86 285.13 548.79 282.63 565.28 280.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 565.19 282.99 571.83 279.68 564.57 278.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 544.5 290.6 0 57 12 -max_uncalled ",
		label=max_uncalled,
		lp="544.5,292.5",
		pos="e,573.33,279.49 407.65,313.56 435.44,305.91 478.24,294.84 516,288 531.86,285.13 548.79,282.63 565.28,280.51"];
	index_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 784.5 80.5 784.5 99.5 903.5 99.5 903.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 844 87.5 0 103 19 -samtools index cram ",
		height=0.27778,
		label="samtools index cram",
		pos="844,90",
		rects="784.5,80.5,903.5,99.5",
		width=1.6528];
	index_cram -> cram	[_draw_="c 7 -#000000 B 4 850.17 80.71 854.33 75.12 859.94 67.58 864.87 60.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 866.73 62.56 868.95 55.48 862.8 59.63 ",
		pos="e,869.85,54.265 850.17,80.709 854.33,75.117 859.94,67.579 864.87,60.957"];
	vcf2bed -> cpgs	[_draw_="c 7 -#000000 B 7 1081.66 125.62 1064.24 119.7 1041.55 110.9 1023 100 1003.65 88.63 984.08 71.8 971.33 59.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 973.19 58.34 966.42 55.31 969.82 61.9 ",
		pos="e,965.32,54.267 1081.7,125.62 1064.2,119.7 1041.6,110.9 1023,100 1003.7,88.634 984.08,71.796 971.33,59.951"];
	vcf2bed -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 4 1109 125.71 1109 120.59 1109 113.85 1109 107.67 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1129 110.6 0 40 8 -bedgraph ",
		label=bedgraph,
		lp="1129,112.5",
		pos="e,1109,99.265 1109,125.71 1109,120.59 1109,113.85 1109,107.67"];
	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 813 215.5 813 234.5 923 234.5 923 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 868 222.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="868,225",
		rects="813,215.5,923,234.5",
		width=1.5278];
	merge -> bam_to_cram	[_draw_="c 7 -#000000 B 4 868 215.71 868 210.59 868 203.85 868 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 870.45 197.78 868 190.78 865.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 877.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="877.5,202.5",
		pos="e,868,189.27 868,215.71 868,210.59 868,203.85 868,197.67"];
	merge -> pileup	[_draw_="c 7 -#000000 B 4 898.43 215.5 922.89 208.67 957.41 199.03 983.75 191.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 984.1 194.13 990.18 189.88 982.78 189.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 967.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="967.5,202.5",
		pos="e,991.64,189.48 898.43,215.5 922.89,208.67 957.41,199.03 983.75,191.68"];
	bedgraph_to_bigwig -> cpg_bedgraph	[_draw_="c 7 -#000000 B 4 1092.01 80.5 1079.29 74.14 1061.7 65.35 1047.47 58.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1048.67 56.09 1041.31 55.15 1046.47 60.48 ",
		pos="e,1040,54.478 1092,80.505 1079.3,74.144 1061.7,65.351 1047.5,58.233"];
	bam_to_trimmed_fastq_and_biscuit_alignments -> merge	[_draw_="c 7 -#000000 B 4 701.9 260.5 735.49 253.53 783.19 243.62 818.86 236.21 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 819.35 238.61 825.71 234.79 818.35 233.81 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 794.5 245.6 0 23 4 -bams ",
		label=bams,
		lp="794.5,247.5",
		pos="e,827.19,234.48 701.9,260.5 735.49,253.53 783.19,243.62 818.86,236.21"];
	bam_to_cram -> index_cram	[_draw_="c 7 -#000000 B 4 865.7 170.56 861.75 156.07 853.6 126.21 848.49 107.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 850.86 106.85 846.66 100.74 846.14 108.14 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 868.5 133.1 0 21 4 -cram ",
		label=cram,
		lp="868.5,135",
		pos="e,846.26,99.284 865.7,170.56 861.75,156.07 853.6,126.21 848.49,107.47"];
	pileup -> vcf	[_draw_="c 7 -#000000 B 7 980.52 176.67 958.17 173.05 932.32 164.54 918 145 900.31 120.86 906.22 83.76 911.81 62.49 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 914.13 63.29 913.7 55.89 909.42 61.95 ",
		pos="e,914.12,54.435 980.52,176.67 958.17,173.05 932.32,164.54 918,145 900.31,120.86 906.22,83.758 911.81,62.494"];
	pileup -> vcf2bed	[_draw_="c 7 -#000000 B 4 1039.19 170.5 1052.06 164.14 1069.85 155.35 1084.25 148.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1085.3 150.45 1090.49 145.15 1083.13 146.05 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1079.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="1079.5,157.5",
		pos="e,1091.8,144.48 1039.2,170.5 1052.1,164.14 1069.8,155.35 1084.2,148.23"];
}