digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 413 807 413 807 0 ",
		bb="0,0,807,413",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 350 8 405 799 405 799 350 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 393 0 84 15 -Workflow Inputs ",
			bb="8,350,799,405",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,395.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		ref_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 358.5 16.5 377.5 79.5 377.5 79.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 48 365.5 0 47 8 -ref_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=ref_name,
			pos="48,368",
			rects="16.5,358.5,79.5,377.5",
			width=0.875];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 503.5 358.5 503.5 377.5 576.5 377.5 576.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 540 365.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="540,368",
			rects="503.5,358.5,576.5,377.5",
			width=1.0139];
		insert_size	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 290.5 358.5 290.5 377.5 359.5 377.5 359.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 325 365.5 0 53 11 -insert_size ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=insert_size,
			pos="325,368",
			rects="290.5,358.5,359.5,377.5",
			width=0.95833];
		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 436.5 358.5 436.5 377.5 499.5 377.5 499.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 468 365.5 0 47 9 -reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference,
			pos="468,368",
			rects="436.5,358.5,499.5,377.5",
			width=0.875];
		region_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 364 358.5 364 377.5 432 377.5 432 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 398 365.5 0 52 11 -region_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=region_file,
			pos="398,368",
			rects="364,358.5,432,377.5",
			width=0.94444];
		tumor_sample_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 166 358.5 166 377.5 286 377.5 286 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 226 365.5 0 104 17 -tumor_sample_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_sample_name,
			pos="226,368",
			rects="166,358.5,286,377.5",
			width=1.6667];
		output_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 709.5 358.5 709.5 377.5 790.5 377.5 790.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 750 365.5 0 65 11 -output_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_name,
			pos="750,368",
			rects="709.5,358.5,790.5,377.5",
			width=1.125];
		normal_sample_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 580.5 358.5 580.5 377.5 705.5 377.5 705.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 643 365.5 0 109 18 -normal_sample_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_sample_name,
			pos="643,368",
			rects="580.5,358.5,705.5,377.5",
			width=1.7361];
		normal_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 84 358.5 84 377.5 162 377.5 162 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 123 365.5 0 62 10 -normal_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_bam,
			pos="123,368",
			rects="84,358.5,162,377.5",
			width=1.0833];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 409 8 409 63 529 63 529 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 463 15 0 92 16 -Workflow Outputs ",
			bb="409,8,529,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="463,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		pindel_region_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 417.5 35.5 417.5 54.5 520.5 54.5 520.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 469 42.5 0 87 17 -pindel_region_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=pindel_region_vcf,
			pos="469,45",
			rects="417.5,35.5,520.5,54.5",
			width=1.4306];
	}
	pindel2vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 423 215.5 423 234.5 515 234.5 515 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 469 222.5 0 76 15 -pindel v0.2.5b8 ",
		height=0.27778,
		label="pindel v0.2.5b8",
		pos="469,225",
		rects="423,215.5,515,234.5",
		width=1.2778];
	ref_name -> pindel2vcf	[_draw_="c 7 -#000000 B 7 57.84 358.6 77.43 342.34 123.29 306.52 168 288 250.15 253.97 352.91 237.97 414.63 230.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 414.86 233.39 421.55 230.18 414.33 228.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 187.5 290.6 0 39 8 -ref_name ",
		label=ref_name,
		lp="187.5,292.5",
		pos="e,423.06,230.02 57.84,358.6 77.432,342.34 123.29,306.52 168,288 250.15,253.97 352.91,237.97 414.63,230.95"];
	pindel_region	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 309 305.5 309 324.5 401 324.5 401 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 355 312.5 0 76 15 -pindel v0.2.5b8 ",
		height=0.27778,
		label="pindel v0.2.5b8",
		pos="355,315",
		rects="309,305.5,401,324.5",
		width=1.2778];
	tumor_bam -> pindel_region	[_draw_="c 7 -#000000 B 7 529.52 358.79 518.75 350.81 501.17 339.04 484 333 460.28 324.65 432.79 320.35 409.3 318.15 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 409.53 315.71 402.35 317.56 409.12 320.6 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 526 335.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="526,337.5",
		pos="e,400.84,317.44 529.52,358.79 518.75,350.81 501.17,339.04 484,333 460.28,324.65 432.79,320.35 409.3,318.15"];
	insert_size -> pindel_region	[_draw_="c 7 -#000000 B 7 327.9 358.53 330.53 351.42 334.78 341.15 340 333 340.49 332.24 341.01 331.47 341.55 330.72 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 343.35 332.39 345.87 325.41 339.55 329.3 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 362 335.6 0 44 11 -insert_size ",
		label=insert_size,
		lp="362,337.5",
		pos="e,346.82,324.24 327.9,358.53 330.53,351.42 334.78,341.15 340,333 340.49,332.24 341.01,331.47 341.55,330.72"];
	reference -> pindel2vcf	[_draw_="c 7 -#000000 B 7 474.94 358.81 478.4 354.19 482.21 348.13 484 342 494.12 307.42 483 265.04 475.23 242.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 477.55 241.52 472.88 235.76 472.94 243.18 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 507 290.6 0 40 9 -reference ",
		label=reference,
		lp="507,292.5",
		pos="e,472.37,234.34 474.94,358.81 478.4,354.19 482.21,348.13 484,342 494.12,307.42 483,265.04 475.23,242.3"];
	reference -> pindel_region	[_draw_="c 7 -#000000 B 7 461.26 358.67 454.45 350.84 443.22 339.38 431 333 424.22 329.46 416.73 326.65 409.17 324.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 409.83 322.07 402.44 322.63 408.57 326.8 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 463 335.6 0 40 9 -reference ",
		label=reference,
		lp="463,337.5",
		pos="e,400.98,322.24 461.26,358.67 454.45,350.84 443.22,339.38 431,333 424.22,329.46 416.73,326.65 409.17,324.43"];
	region_file -> pindel_region	[_draw_="c 7 -#000000 B 7 395.27 358.72 392.54 351.35 387.76 340.59 381 333 379.92 331.79 378.74 330.63 377.5 329.53 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 379.15 327.71 372.1 325.41 376.18 331.61 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 408.5 335.6 0 43 11 -region_file ",
		label=region_file,
		lp="408.5,337.5",
		pos="e,370.9,324.49 395.27,358.72 392.54,351.35 387.76,340.59 381,333 379.92,331.79 378.74,330.63 377.5,329.53"];
	tumor_sample_name -> pindel_region	[_draw_="c 7 -#000000 B 7 229.36 358.53 232.97 350.59 239.51 339.05 249 333 257.88 327.34 279.59 323.36 301.07 320.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 301.09 323.15 307.76 319.9 300.52 318.28 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 291.5 335.6 0 85 17 -tumor_sample_name ",
		label=tumor_sample_name,
		lp="291.5,337.5",
		pos="e,309.26,319.72 229.36,358.53 232.97,350.59 239.51,339.05 249,333 257.88,327.34 279.59,323.36 301.07,320.68"];
	output_name -> pindel2vcf	[_draw_="c 7 -#000000 B 4 733.26 358.6 685.53 334.65 548.59 265.94 492.94 238.01 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 494.36 235.98 487 235.03 492.16 240.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 636.5 290.6 0 55 11 -output_name ",
		label=output_name,
		lp="636.5,292.5",
		pos="e,485.65,234.35 733.26,358.6 685.53,334.65 548.59,265.94 492.94,238.01"];
	normal_sample_name -> pindel_region	[_draw_="c 7 -#000000 B 7 624.55 358.61 606.1 350.61 576.68 338.93 550 333 503.08 322.57 448.48 318.48 409.01 316.9 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 409.43 314.46 402.34 316.66 409.25 319.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 626 335.6 0 90 18 -normal_sample_name ",
		label=normal_sample_name,
		lp="626,337.5",
		pos="e,400.83,316.6 624.55,358.61 606.1,350.61 576.68,338.93 550,333 503.08,322.57 448.48,318.48 409.01,316.9"];
	normal_bam -> pindel_region	[_draw_="c 7 -#000000 B 7 135.12 358.71 147.55 350.66 167.74 338.84 187 333 223.98 321.78 267.43 317.61 300.87 316.2 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 300.73 318.66 307.63 315.95 300.55 313.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 212.5 335.6 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="212.5,337.5",
		pos="e,309.15,315.9 135.12,358.71 147.55,350.66 167.74,338.84 187,333 223.98,321.78 267.43,317.61 300.87,316.2"];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 438 80.5 438 99.5 500 99.5 500 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 469 87.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="469,90",
		rects="438,80.5,500,99.5",
		width=0.86111];
	index -> pindel_region_vcf	[_draw_="c 7 -#000000 B 4 469 80.71 469 75.59 469 68.85 469 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 471.45 62.78 469 55.78 466.55 62.78 ",
		pos="e,469,54.265 469,80.709 469,75.593 469,68.848 469,62.666"];
	fix_vcf_header	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 427.5 170.5 427.5 189.5 510.5 189.5 510.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 469 177.5 0 67 14 -fix vcf header ",
		height=0.27778,
		label="fix vcf header",
		pos="469,180",
		rects="427.5,170.5,510.5,189.5",
		width=1.1528];
	pindel2vcf -> fix_vcf_header	[_draw_="c 7 -#000000 B 4 469 215.71 469 210.59 469 203.85 469 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 471.45 197.78 469 190.78 466.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 475.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="475.5,202.5",
		pos="e,469,189.27 469,215.71 469,210.59 469,203.85 469,197.67"];
	remove_end_tags	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 404.5 125.5 404.5 144.5 533.5 144.5 533.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 469 132.5 0 113 20 -remove END INFO tags ",
		height=0.27778,
		label="remove END INFO tags",
		pos="469,135",
		rects="404.5,125.5,533.5,144.5",
		width=1.7917];
	remove_end_tags -> index	[_draw_="c 7 -#000000 B 4 469 125.71 469 120.59 469 113.85 469 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 471.45 107.78 469 100.78 466.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 475.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="475.5,112.5",
		pos="e,469,99.265 469,125.71 469,120.59 469,113.85 469,107.67"];
	cat	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 325 260.5 325 279.5 357 279.5 357 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 341 267.5 0 16 3 -cat ",
		height=0.27778,
		label=cat,
		pos="341,270",
		rects="325,260.5,357,279.5",
		width=0.44444];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 10 309.3 311.65 269.31 309.11 216.59 304.41 210 297 207.34 294.01 207.36 291 210 288 223.62 272.5 282.8 270.39 316.78 \
270.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 316.69 272.95 323.72 270.57 316.74 268.05 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 234 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="234,292.5",
		pos="e,325.23,270.58 309.3,311.65 269.31,309.11 216.59,304.41 210,297 207.34,294.01 207.36,291 210,288 223.62,272.5 282.8,270.39 316.78,\
270.51"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 309.02 310.43 290.71 307.96 272.65 303.84 267 297 252.22 279.09 289.97 273.5 316.83 271.77 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 316.71 274.23 323.57 271.41 316.45 269.34 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 291 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="291,292.5",
		pos="e,325.08,271.33 309.02,310.43 290.71,307.96 272.65,303.84 267,297 252.22,279.09 289.97,273.5 316.83,271.77"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 332.53 305.57 329.12 303.3 326.06 300.49 324 297 321.73 293.17 322.69 289.11 325.03 285.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 326.72 287.16 329.37 280.24 322.98 284 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 348 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="348,292.5",
		pos="e,330.35,279.08 332.53,305.57 329.12,303.3 326.06,300.49 324,297 321.73,293.17 322.69,289.11 325.03,285.36"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 364.01 305.76 368.49 300.63 372.32 293.9 369 288 367.63 285.57 365.76 283.45 363.63 281.61 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 365.12 279.66 357.96 277.74 362.36 283.7 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 394 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="394,292.5",
		pos="e,356.71,276.88 364.01,305.76 368.49,300.63 372.32,293.9 369,288 367.63,285.57 365.76,283.45 363.63,281.61"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 400.97 308.5 416.23 304.74 427.43 298.46 419 288 412.31 279.69 385.44 275.23 365.09 272.99 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 365.57 270.57 358.36 272.31 365.08 275.45 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 445 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="445,292.5",
		pos="e,356.85,272.16 400.97,308.5 416.23,304.74 427.43,298.46 419,288 412.31,279.69 385.44,275.23 365.09,272.99"];
	cat -> pindel2vcf	[_draw_="c 7 -#000000 B 4 356.95 263.64 376.67 257.02 410.71 245.58 436.12 237.05 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 436.74 239.42 442.6 234.87 435.18 234.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 437.5 245.6 0 43 10 -pindel_out ",
		label=pindel_out,
		lp="437.5,247.5",
		pos="e,444.03,234.39 356.95,263.64 376.67,257.02 410.71,245.58 436.12,237.05"];
	fix_vcf_header -> remove_end_tags	[_draw_="c 7 -#000000 B 4 469 170.71 469 165.59 469 158.85 469 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 471.45 152.78 469 145.78 466.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 475.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="475.5,157.5",
		pos="e,469,144.27 469,170.71 469,165.59 469,158.85 469,152.67"];
}