digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 458 522 458 522 0 ",
		bb="0,0,522,458",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
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	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 395 8 450 514 450 514 395 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 438 0 84 15 -Workflow Inputs ",
			bb="8,395,514,450",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,440.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		docm_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 94 403.5 94 422.5 158 422.5 158 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 126 410.5 0 48 8 -docm_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=docm_vcf,
			pos="126,413",
			rects="94,403.5,158,422.5",
			width=0.88889];
		interval_list	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 162 403.5 162 422.5 236 422.5 236 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 199 410.5 0 58 13 -interval_list ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=interval_list,
			pos="199,413",
			rects="162,403.5,236,422.5",
			width=1.0278];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 403.5 16.5 422.5 89.5 422.5 89.5 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 53 410.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="53,413",
			rects="16.5,403.5,89.5,422.5",
			width=1.0139];
		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 240.5 403.5 240.5 422.5 303.5 422.5 303.5 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 272 410.5 0 47 9 -reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference,
			pos="272,413",
			rects="240.5,403.5,303.5,422.5",
			width=0.875];
		normal_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 308 403.5 308 422.5 386 422.5 386 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 347 410.5 0 62 10 -normal_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_bam,
			pos="347,413",
			rects="308,403.5,386,422.5",
			width=1.0833];
		filter_docm_variants	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 390 403.5 390 422.5 506 422.5 506 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 448 410.5 0 100 20 -filter_docm_variants ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=filter_docm_variants,
			pos="448,413",
			rects="390,403.5,506,422.5",
			width=1.6111];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 238 8 238 63 364 63 364 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 292 15 0 92 16 -Workflow Outputs ",
			bb="238,8,364,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="292,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		docm_variants_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 246.5 35.5 246.5 54.5 355.5 54.5 355.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 301 42.5 0 93 17 -docm_variants_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=docm_variants_vcf,
			pos="301,45",
			rects="246.5,35.5,355.5,54.5",
			width=1.5139];
	}
	GATK_haplotype_caller	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 116 350.5 116 369.5 266 369.5 266 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 191 357.5 0 134 26 -HaplotypeCaller (GATK 3.6) ",
		height=0.27778,
		label="HaplotypeCaller (GATK 3.6)",
		pos="191,360",
		rects="116,350.5,266,369.5",
		width=2.0833];
	docm_vcf -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 7 130.89 403.79 135.72 396.26 143.71 385.21 153 378 155.17 376.32 157.53 374.76 159.98 373.32 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 161.08 375.51 166.15 370.1 158.81 371.17 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 172.5 380.6 0 39 8 -docm_vcf ",
		label=docm_vcf,
		lp="172.5,382.5",
		pos="e,167.49,369.4 130.89,403.79 135.72,396.26 143.71,385.21 153,378 155.17,376.32 157.53,374.76 159.98,373.32"];
	interval_list -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 7 197.65 403.67 196.87 398.81 195.87 392.56 195 387 194.52 383.93 194.01 380.65 193.52 377.5 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 195.96 377.24 192.48 370.69 191.12 377.99 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 218.5 380.6 0 47 13 -interval_list ",
		label=interval_list,
		lp="218.5,382.5",
		pos="e,192.25,369.2 197.65,403.67 196.87,398.81 195.87,392.56 195,387 194.52,383.93 194.01,380.65 193.52,377.5"];
	tumor_bam -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 7 67.9 403.64 81.81 396.11 103.32 385.15 123 378 129.49 375.64 136.45 373.49 143.35 371.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 143.79 373.99 149.93 369.82 142.53 369.26 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 132.5 380.6 0 19 3 -bam ",
		label=bam,
		lp="132.5,382.5",
		pos="e,151.39,369.43 67.899,403.64 81.808,396.11 103.32,385.15 123,378 129.49,375.64 136.45,373.49 143.35,371.57"];
	docm_filter	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 198.5 170.5 198.5 189.5 403.5 189.5 403.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 301 177.5 0 189 38 -Filter variants from the DoCM detector ",
		height=0.27778,
		label="Filter variants from the DoCM detector",
		pos="301,180",
		rects="198.5,170.5,403.5,189.5",
		width=2.8472];
	tumor_bam -> docm_filter	[_draw_="c 7 -#000000 B 10 56.55 403.51 60.4 393.52 66 376.35 66 361 66 361 66 361 66 224 66 196.41 129.46 185.89 190.42 182.14 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 190.25 184.6 197.1 181.76 189.97 179.71 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 89 290.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="89,292.5",
		pos="e,198.61,181.67 56.552,403.51 60.401,393.52 66,376.35 66,361 66,361 66,361 66,224 66,196.41 129.46,185.89 190.42,182.14"];
	reference -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 7 265.77 403.66 259.69 396.04 249.8 384.93 239 378 236.03 376.09 232.82 374.37 229.51 372.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 230.49 370.57 223.09 370.08 228.57 375.08 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 270 380.6 0 40 9 -reference ",
		label=reference,
		lp="270,382.5",
		pos="e,221.69,369.49 265.77,403.66 259.69,396.04 249.8,384.93 239,378 236.03,376.09 232.82,374.37 229.51,372.81"];
	normal_bam -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 10 329.67 403.59 320.64 399.01 309.52 393.05 300 387 294.37 383.42 294.12 380.65 288 378 282.26 375.52 276.19 373.4 \
269.98 371.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 270.93 369.3 263.54 369.85 269.66 374.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 325.5 380.6 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="325.5,382.5",
		pos="e,262.08,369.45 329.67,403.59 320.64,399.01 309.52,393.05 300,387 294.37,383.42 294.12,380.65 288,378 282.26,375.52 276.19,373.4 \
269.98,371.59"];
	normal_bam -> docm_filter	[_draw_="c 7 -#000000 B 13 349.1 403.76 351.47 393.73 355 376.24 355 361 355 361 355 361 355 224 355 212.03 356.1 206.81 348 198 346.56 196.43 \
344.97 195.01 343.26 193.72 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 344.74 191.76 337.5 190.16 342.17 195.93 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 380.5 290.6 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="380.5,292.5",
		pos="e,336.22,189.37 349.1,403.76 351.47,393.73 355,376.24 355,361 355,361 355,361 355,224 355,212.03 356.1,206.81 348,198 346.56,196.43 \
344.97,195.01 343.26,193.72"];
	filter_docm_variants -> docm_filter	[_draw_="c 7 -#000000 B 10 444.45 403.51 440.6 393.52 435 376.35 435 361 435 361 435 361 435 224 435 208.56 402.35 197.89 369.28 191.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 370.16 188.71 362.82 189.76 369.21 193.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 476 290.6 0 82 20 -filter_docm_variants ",
		label=filter_docm_variants,
		lp="476,292.5",
		pos="e,361.34,189.46 444.45,403.51 440.6,393.52 435,376.35 435,361 435,361 435,361 435,224 435,208.56 402.35,197.89 369.28,191.04"];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 206 260.5 206 279.5 268 279.5 268 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 237 267.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="237,270",
		rects="206,260.5,268,279.5",
		width=0.86111];
	decompose	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 205 215.5 205 234.5 309 234.5 309 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 257 222.5 0 88 16 -run vt decompose ",
		height=0.27778,
		label="run vt decompose",
		pos="257,225",
		rects="205,215.5,309,234.5",
		width=1.4444];
	index -> decompose	[_draw_="c 7 -#000000 B 4 240.86 260.71 243.35 255.36 246.67 248.22 249.65 241.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 251.79 243.02 252.52 235.64 247.34 240.95 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 254.5 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="254.5,247.5",
		pos="e,253.16,234.27 240.86,260.71 243.35,255.36 246.67,248.22 249.65,241.81"];
	decompose -> docm_filter	[_draw_="c 7 -#000000 B 7 260.51 215.53 263.08 210.05 267.01 203.03 272 198 273.44 196.55 275.03 195.18 276.7 193.89 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 277.72 196.16 282.14 190.21 274.97 192.1 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 311.5 200.6 0 79 17 -docm_raw_variants ",
		label=docm_raw_variants,
		lp="311.5,202.5",
		pos="e,283.39,189.36 260.51,215.53 263.08,210.05 267.01,203.03 272,198 273.44,196.55 275.03,195.18 276.7,193.89"];
	bgzip	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 164.5 305.5 164.5 324.5 229.5 324.5 229.5 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 197 312.5 0 49 9 -bgzip VCF ",
		height=0.27778,
		label="bgzip VCF",
		pos="197,315",
		rects="164.5,305.5,229.5,324.5",
		width=0.90278];
	GATK_haplotype_caller -> bgzip	[_draw_="c 7 -#000000 B 4 192.16 350.71 192.87 345.59 193.81 338.85 194.67 332.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 197.1 333.04 195.64 325.76 192.24 332.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 200.5 335.6 0 13 4 -file ",
		label=file,
		lp="200.5,337.5",
		pos="e,195.85,324.27 192.16,350.71 192.87,345.59 193.81,338.85 194.67,332.67"];
	index2	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 270 80.5 270 99.5 332 99.5 332 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 301 87.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="301,90",
		rects="270,80.5,332,99.5",
		width=0.86111];
	index2 -> docm_variants_vcf	[_draw_="c 7 -#000000 B 4 301 80.71 301 75.59 301 68.85 301 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 303.45 62.78 301 55.78 298.55 62.78 ",
		pos="e,301,54.265 301,80.709 301,75.593 301,68.848 301,62.666"];
	bgzip2	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 268.5 125.5 268.5 144.5 333.5 144.5 333.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 301 132.5 0 49 9 -bgzip VCF ",
		height=0.27778,
		label="bgzip VCF",
		pos="301,135",
		rects="268.5,125.5,333.5,144.5",
		width=0.90278];
	docm_filter -> bgzip2	[_draw_="c 7 -#000000 B 4 301 170.71 301 165.59 301 158.85 301 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 303.45 152.78 301 145.78 298.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 307.5 155.6 0 13 4 -file ",
		label=file,
		lp="307.5,157.5",
		pos="e,301,144.27 301,170.71 301,165.59 301,158.85 301,152.67"];
	bgzip -> index	[_draw_="c 7 -#000000 B 4 204.71 305.71 210.14 299.88 217.53 291.93 223.87 285.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 225.31 287.17 228.28 280.37 221.72 283.83 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 226.5 290.6 0 13 3 -vcf ",
		label=vcf,
		lp="226.5,292.5",
		pos="e,229.31,279.27 204.71,305.71 210.14,299.88 217.53,291.93 223.87,285.12"];
	bgzip2 -> index2	[_draw_="c 7 -#000000 B 4 301 125.71 301 120.59 301 113.85 301 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 303.45 107.78 301 100.78 298.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 307.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="307.5,112.5",
		pos="e,301,99.265 301,125.71 301,120.59 301,113.85 301,107.67"];
}