digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 233 838 233 838 0 ",
		bb="0,0,838,233",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
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	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
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	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 33 170 33 225 728 225 728 170 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 83 213 0 84 15 -Workflow Inputs ",
			bb="33,170,728,225",
			label="Workflow Inputs",
			lheight=0.15,
			lp="83,215.5",
			lwidth=1.17,
			rank=same,
			style=dashed
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		scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 440 178.5 440 197.5 514 197.5 514 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 477 185.5 0 58 12 -scatter_plot ",
			fillcolor="#94DDF4",
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			label=scatter_plot,
			pos="477,188",
			rects="440,178.5,514,197.5",
			width=1.0278];
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			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 561 185.5 0 70 13 -reference_cnn ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_cnn,
			pos="561,188",
			rects="518,178.5,604,197.5",
			width=1.1944];
		drop_low_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 608.5 178.5 608.5 197.5 719.5 197.5 719.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 664 185.5 0 95 17 -drop_low_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=drop_low_coverage,
			pos="664,188",
			rects="608.5,178.5,719.5,197.5",
			width=1.5417];
		male_reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 145.5 178.5 145.5 197.5 238.5 197.5 238.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 192 185.5 0 77 14 -male_reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=male_reference,
			pos="192,188",
			rects="145.5,178.5,238.5,197.5",
			width=1.2917];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 242.5 178.5 242.5 197.5 315.5 197.5 315.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 279 185.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="279,188",
			rects="242.5,178.5,315.5,197.5",
			width=1.0139];
		method	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 320 178.5 320 197.5 374 197.5 374 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 347 185.5 0 38 6 -method ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=method,
			pos="347,188",
			rects="320,178.5,374,197.5",
			width=0.75];
		cnvkit_vcf_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 41 178.5 41 197.5 141 197.5 141 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 91 185.5 0 84 15 -cnvkit_vcf_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cnvkit_vcf_name,
			pos="91,188",
			rects="41,178.5,141,197.5",
			width=1.3889];
		diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 378.5 178.5 378.5 197.5 435.5 197.5 435.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 407 185.5 0 41 7 -diagram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=diagram,
			pos="407,188",
			rects="378.5,178.5,435.5,197.5",
			width=0.79167];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 8 8 63 830 63 830 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 62 15 0 92 16 -Workflow Outputs ",
			bb="8,8,830,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="62,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		tumor_antitarget_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 315.5 35.5 315.5 54.5 464.5 54.5 464.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 390 42.5 0 133 25 -tumor_antitarget_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_antitarget_coverage,
			pos="390,45",
			rects="315.5,35.5,464.5,54.5",
			width=2.0694];
		cn_diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 469 35.5 469 54.5 543 54.5 543 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 506 42.5 0 58 10 -cn_diagram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_diagram,
			pos="506,45",
			rects="469,35.5,543,54.5",
			width=1.0278];
		tumor_segmented_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 547.5 35.5 547.5 54.5 686.5 54.5 686.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 617 42.5 0 123 22 -tumor_segmented_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_segmented_ratios,
			pos="617,45",
			rects="547.5,35.5,686.5,54.5",
			width=1.9306];
		tumor_target_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 690.5 35.5 690.5 54.5 821.5 54.5 821.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 756 42.5 0 115 21 -tumor_target_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_target_coverage,
			pos="756,45",
			rects="690.5,35.5,821.5,54.5",
			width=1.8194];
		cnvkit_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 35.5 16.5 54.5 83.5 54.5 83.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 50 42.5 0 51 10 -cnvkit_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cnvkit_vcf,
			pos="50,45",
			rects="16.5,35.5,83.5,54.5",
			width=0.93056];
		cn_scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 87.5 35.5 87.5 54.5 178.5 54.5 178.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 133 42.5 0 75 15 -cn_scatter_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_scatter_plot,
			pos="133,45",
			rects="87.5,35.5,178.5,54.5",
			width=1.2639];
		tumor_bin_level_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 183 35.5 183 54.5 311 54.5 311 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 247 42.5 0 112 22 -tumor_bin_level_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bin_level_ratios,
			pos="247,45",
			rects="183,35.5,311,54.5",
			width=1.7778];
	}
	cnvkit_main	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 351.5 125.5 351.5 144.5 428.5 144.5 428.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 390 132.5 0 61 11 -cnvkit_main ",
		height=0.27778,
		label=cnvkit_main,
		pos="390,135",
		rects="351.5,125.5,428.5,144.5",
		width=1.0694];
	scatter_plot -> cnvkit_main	[_draw_="c 7 -#000000 B 7 467.77 178.61 459.22 171.16 445.92 160.35 433 153 429.6 151.07 425.94 149.26 422.24 147.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 423.46 145.44 416.05 144.96 421.54 149.95 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 469.5 155.6 0 49 12 -scatter_plot ",
		label=scatter_plot,
		lp="469.5,157.5",
		pos="e,414.66,144.37 467.77,178.61 459.22,171.16 445.92,160.35 433,153 429.6,151.07 425.94,149.26 422.24,147.59"];
	reference_cnn -> cnvkit_main	[_draw_="c 7 -#000000 B 7 547.89 178.67 534.95 170.83 514.34 159.37 495 153 476.29 146.84 454.94 142.86 436.41 140.32 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 436.86 137.91 429.61 139.44 436.24 142.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 544.5 155.6 0 59 13 -reference_cnn ",
		label=reference_cnn,
		lp="544.5,157.5",
		pos="e,428.11,139.25 547.89,178.67 534.95,170.83 514.34,159.37 495,153 476.29,146.84 454.94,142.86 436.41,140.32"];
	drop_low_coverage -> cnvkit_main	[_draw_="c 7 -#000000 B 7 646.38 178.62 628.75 170.63 600.62 158.95 575 153 528.71 142.24 474.41 138.24 436.66 136.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 436.99 134.34 429.91 136.54 436.82 139.23 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 644.5 155.6 0 79 17 -drop_low_coverage ",
		label=drop_low_coverage,
		lp="644.5,157.5",
		pos="e,428.4,136.49 646.38,178.62 628.75,170.63 600.62,158.95 575,153 528.71,142.24 474.41,138.24 436.66,136.78"];
	male_reference -> cnvkit_main	[_draw_="c 7 -#000000 B 10 199.2 178.61 206.72 170.5 219.31 158.62 233 153 251.98 145.21 304.61 147.3 325 145 330.92 144.33 337.12 143.56 \
343.26 142.76 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 343.43 145.21 350.05 141.85 342.78 140.35 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 265 155.6 0 64 14 -male_reference ",
		label=male_reference,
		lp="265,157.5",
		pos="e,351.55,141.65 199.2,178.61 206.72,170.5 219.31,158.62 233,153 251.98,145.21 304.61,147.3 325,145 330.92,144.33 337.12,143.56 343.26,\
142.76"];
	cns_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 53.5 80.5 53.5 99.5 348.5 99.5 348.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 201 87.5 0 279 57 -Convert default cnvkit .cns output to standard vcf format ",
		height=0.27778,
		label="Convert default cnvkit .cns output to standard vcf format",
		pos="201,90",
		rects="53.5,80.5,348.5,99.5",
		width=4.0972];
	male_reference -> cns_to_vcf	[_draw_="c 7 -#000000 B 4 192.77 178.82 194.24 163.09 197.49 128.4 199.44 107.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 201.85 108.14 200.07 100.94 196.97 107.69 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 230 133.1 0 64 14 -male_reference ",
		label=male_reference,
		lp="230,135",
		pos="e,200.21,99.438 192.77,178.82 194.24,163.09 197.49,128.4 199.44,107.63"];
	tumor_bam -> cnvkit_main	[_draw_="c 7 -#000000 B 7 284.1 178.62 289.34 170.74 298.25 159.26 309 153 319.49 146.89 331.88 142.96 343.78 140.44 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 343.99 142.89 350.41 139.19 343.08 138.08 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 332 155.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="332,157.5",
		pos="e,351.9,138.91 284.1,178.62 289.34,170.74 298.25,159.26 309,153 319.49,146.89 331.88,142.96 343.78,140.44"];
	tumor_bam -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 278.94 178.84 278.44 166.02 275.76 140.98 263 125 255.42 115.5 244.43 108.27 233.81 102.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 234.94 100.79 227.56 100.08 232.88 105.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 296 133.1 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="296,135",
		pos="e,226.19,99.44 278.94,178.84 278.44,166.02 275.76,140.98 263,125 255.42,115.5 244.43,108.27 233.81,102.97"];
	method -> cnvkit_main	[_draw_="c 7 -#000000 B 7 349.12 178.66 351.35 171.25 355.45 160.47 362 153 363.19 151.65 364.51 150.37 365.92 149.16 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 367.02 151.39 371.24 145.28 364.14 147.43 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 378 155.6 0 32 6 -method ",
		label=method,
		lp="378,157.5",
		pos="e,372.46,144.39 349.12,178.66 351.35,171.25 355.45,160.47 362,153 363.19,151.65 364.51,150.37 365.92,149.16"];
	cnvkit_vcf_name -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 96.31 178.54 104.64 165.75 121.81 141.29 141 125 151.09 116.44 163.64 108.93 174.66 103.17 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 175.5 105.49 180.64 100.14 173.29 101.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 168.5 133.1 0 55 11 -output_name ",
		label=output_name,
		lp="168.5,135",
		pos="e,181.99,99.462 96.309,178.54 104.64,165.75 121.81,141.29 141,125 151.09,116.44 163.64,108.93 174.66,103.17"];
	diagram -> cnvkit_main	[_draw_="c 7 -#000000 B 4 404.19 178.58 401.82 171.45 398.34 161.02 395.42 152.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 397.77 151.57 393.23 145.7 393.12 153.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 415 155.6 0 34 7 -diagram ",
		label=diagram,
		lp="415,157.5",
		pos="e,392.75,144.26 404.19,178.58 401.82,171.45 398.34,161.02 395.42,152.27"];
	cnvkit_main -> tumor_antitarget_coverage	[_draw_="c 7 -#000000 B 4 390 125.56 390 111.14 390 81.48 390 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 392.45 62.8 390 55.8 387.55 62.8 ",
		pos="e,390,54.284 390,125.56 390,111.14 390,81.476 390,62.727"];
	cnvkit_main -> cn_diagram	[_draw_="c 7 -#000000 B 4 401.12 125.56 421.35 110.21 464.32 77.62 488.51 59.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 489.78 61.38 493.87 55.2 486.82 57.48 ",
		pos="e,495.08,54.284 401.12,125.56 421.35,110.21 464.32,77.622 488.51,59.271"];
	cnvkit_main -> tumor_segmented_ratios	[_draw_="c 7 -#000000 B 4 411.77 125.56 452.7 109.69 541.17 75.4 587.44 57.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 588.25 59.77 593.89 54.96 586.48 55.21 ",
		pos="e,595.3,54.412 411.77,125.56 452.7,109.69 541.17,75.397 587.44,57.459"];
	cnvkit_main -> tumor_target_coverage	[_draw_="c 7 -#000000 B 7 425.68 125.55 481.46 112.33 592.72 85.88 687 63 695.72 60.88 705.06 58.6 713.95 56.41 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 714.29 58.85 720.5 54.8 713.12 54.09 ",
		pos="e,721.97,54.434 425.68,125.55 481.46,112.33 592.72,85.883 687,63 695.72,60.883 705.06,58.597 713.95,56.409"];
	cnvkit_main -> cn_scatter_plot	[_draw_="c 7 -#000000 B 10 386.68 125.71 381.25 113.37 369.24 90.51 351 80 318.3 61.15 218.86 71.13 182 63 175.17 61.49 167.98 59.34 161.28 \
57.07 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 162.52 54.91 155.1 54.88 160.88 59.53 ",
		pos="e,153.67,54.376 386.68,125.71 381.25,113.37 369.24,90.509 351,80 318.3,61.154 218.86,71.13 182,63 175.17,61.494 167.98,59.339 161.28,\
57.066"];
	cnvkit_main -> tumor_bin_level_ratios	[_draw_="c 7 -#000000 B 10 388.73 125.5 386.24 110.02 380.24 78.17 372 71 362.35 62.6 327.56 65.44 315 63 305.58 61.17 295.5 58.85 286.08 \
56.52 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 286.84 54.19 279.46 54.85 285.65 58.94 ",
		pos="e,277.99,54.48 388.73,125.5 386.24,110.02 380.24,78.167 372,71 362.35,62.605 327.56,65.443 315,63 305.58,61.166 295.5,58.848 286.08,\
56.518"];
	cnvkit_main -> cns_to_vcf	[_draw_="c 7 -#000000 B 10 351.96 129.1 329.83 125.89 304.33 121.48 294 117 287.88 114.35 288.07 110.75 282 108 276.69 105.6 271.03 103.53 \
265.26 101.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 266.22 99.47 258.81 99.91 264.87 104.18 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 309 110.6 0 30 8 -cnr_file ",
		label=cnr_file,
		lp="309,112.5",
		pos="e,257.36,99.495 351.96,129.1 329.83,125.89 304.33,121.48 294,117 287.88,114.35 288.07,110.75 282,108 276.69,105.6 271.03,103.53 \
265.26,101.75"];
	cnvkit_main -> cns_to_vcf	[_draw_="c 7 -#000000 B 10 354.58 125.56 347.26 123.23 339.73 120.39 333 117 327.05 114 327.16 110.55 321 108 315.05 105.54 308.81 103.43 \
302.44 101.61 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 303.16 99.27 295.76 99.85 301.91 104 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 348.5 110.6 0 31 8 -cns_file ",
		label=cns_file,
		lp="348.5,112.5",
		pos="e,294.3,99.464 354.58,125.56 347.26,123.23 339.73,120.39 333,117 327.05,114 327.16,110.55 321,108 315.05,105.54 308.81,103.43 302.44,\
101.61"];
	cns_to_vcf -> cnvkit_vcf	[_draw_="c 7 -#000000 B 7 153.8 80.52 133.04 76.2 108.53 70.31 87 63 82.65 61.52 78.12 59.7 73.79 57.8 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 75.04 55.68 67.66 54.99 73 60.13 ",
		pos="e,66.28,54.362 153.8,80.517 133.04,76.203 108.53,70.313 87,63 82.649,61.522 78.122,59.699 73.79,57.801"];
}