digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 458 522 458 522 0 ",
		bb="0,0,522,458",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 395 8 450 514 450 514 395 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 438 0 84 15 -Workflow Inputs ",
			bb="8,395,514,450",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,440.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		filter_docm_variants	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 403.5 16 422.5 132 422.5 132 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 74 410.5 0 100 20 -filter_docm_variants ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=filter_docm_variants,
			pos="74,413",
			rects="16,403.5,132,422.5",
			width=1.6111];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 136.5 403.5 136.5 422.5 209.5 422.5 209.5 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 173 410.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="173,413",
			rects="136.5,403.5,209.5,422.5",
			width=1.0139];
		docm_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 214 403.5 214 422.5 278 422.5 278 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 246 410.5 0 48 8 -docm_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=docm_vcf,
			pos="246,413",
			rects="214,403.5,278,422.5",
			width=0.88889];
		normal_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 428 403.5 428 422.5 506 422.5 506 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 467 410.5 0 62 10 -normal_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_bam,
			pos="467,413",
			rects="428,403.5,506,422.5",
			width=1.0833];
		interval_list	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 282 403.5 282 422.5 356 422.5 356 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 319 410.5 0 58 13 -interval_list ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=interval_list,
			pos="319,413",
			rects="282,403.5,356,422.5",
			width=1.0278];
		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 360.5 403.5 360.5 422.5 423.5 422.5 423.5 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 392 410.5 0 47 9 -reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference,
			pos="392,413",
			rects="360.5,403.5,423.5,422.5",
			width=0.875];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 122 8 122 63 248 63 248 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 176 15 0 92 16 -Workflow Outputs ",
			bb="122,8,248,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="176,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		docm_variants_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 130.5 35.5 130.5 54.5 239.5 54.5 239.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 185 42.5 0 93 17 -docm_variants_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=docm_variants_vcf,
			pos="185,45",
			rects="130.5,35.5,239.5,54.5",
			width=1.5139];
	}
	docm_filter	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 82.5 170.5 82.5 189.5 287.5 189.5 287.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 185 177.5 0 189 38 -Filter variants from the DoCM detector ",
		height=0.27778,
		label="Filter variants from the DoCM detector",
		pos="185,180",
		rects="82.5,170.5,287.5,189.5",
		width=2.8472];
	filter_docm_variants -> docm_filter	[_draw_="c 7 -#000000 B 10 75.84 403.74 77.91 393.7 81 376.19 81 361 81 361 81 361 81 224 81 209 90.36 199.13 103.45 192.66 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 104.21 195 109.69 190 102.29 190.49 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 122 290.6 0 82 20 -filter_docm_variants ",
		label=filter_docm_variants,
		lp="122,292.5",
		pos="e,111.08,189.4 75.839,403.74 77.913,393.7 81,376.19 81,361 81,361 81,361 81,224 81,209 90.355,199.13 103.45,192.66"];
	tumor_bam -> docm_filter	[_draw_="c 7 -#000000 B 10 173.79 403.71 174.68 393.62 176 376.08 176 361 176 361 176 361 176 224 176 215.13 177.86 205.45 179.88 197.53 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 182.2 198.32 181.74 190.91 177.49 196.99 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 199 290.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="199,292.5",
		pos="e,182.15,189.46 173.79,403.71 174.68,393.62 176,376.08 176,361 176,361 176,361 176,224 176,215.13 177.86,205.45 179.88,197.53"];
	GATK_haplotype_caller	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 202 350.5 202 369.5 352 369.5 352 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 277 357.5 0 134 26 -HaplotypeCaller (GATK 3.6) ",
		height=0.27778,
		label="HaplotypeCaller (GATK 3.6)",
		pos="277,360",
		rects="202,350.5,352,369.5",
		width=2.0833];
	tumor_bam -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 7 185.05 403.68 196.12 396.29 213.18 385.51 229 378 233.14 376.03 237.58 374.17 242.02 372.44 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 242.82 374.75 248.53 370.02 241.11 370.16 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 238.5 380.6 0 19 3 -bam ",
		label=bam,
		lp="238.5,382.5",
		pos="e,249.95,369.49 185.05,403.68 196.12,396.29 213.18,385.51 229,378 233.14,376.03 237.58,374.17 242.02,372.44"];
	docm_vcf -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 7 246.38 403.54 247.06 396.24 248.93 385.7 254 378 254.68 376.96 255.45 375.97 256.28 375.01 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 257.83 376.92 261.32 370.38 254.51 373.32 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 273.5 380.6 0 39 8 -docm_vcf ",
		label=docm_vcf,
		lp="273.5,382.5",
		pos="e,262.43,369.35 246.38,403.54 247.06,396.24 248.93,385.7 254,378 254.68,376.96 255.45,375.97 256.28,375.01"];
	normal_bam -> docm_filter	[_draw_="c 7 -#000000 B 10 466.74 403.7 466.44 393.6 466 376.05 466 361 466 361 466 361 466 224 466 205.93 374.01 194.46 295.3 187.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 295.93 185.55 288.75 187.42 295.53 190.43 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 491.5 290.6 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="491.5,292.5",
		pos="e,287.24,187.3 466.74,403.7 466.44,393.6 466,376.05 466,361 466,361 466,361 466,224 466,205.93 374.01,194.46 295.3,187.95"];
	normal_bam -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 10 445.54 403.52 434.92 399.05 422.04 393.22 411 387 404.88 383.55 404.55 380.56 398 378 386.06 373.33 373.01 369.92 \
360.04 367.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 360.79 365.08 353.47 366.27 359.94 369.9 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 436.5 380.6 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="436.5,382.5",
		pos="e,351.98,366 445.54,403.52 434.92,399.05 422.04,393.22 411,387 404.88,383.55 404.55,380.56 398,378 386.06,373.33 373.01,369.92 360.04,\
367.43"];
	interval_list -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 4 312.06 403.58 305.83 396 296.52 384.71 289.07 375.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 291.11 374.28 284.77 370.43 287.33 377.39 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 321.5 380.6 0 47 13 -interval_list ",
		label=interval_list,
		lp="321.5,382.5",
		pos="e,283.81,369.26 312.06,403.58 305.83,396 296.52,384.71 289.07,375.65"];
	reference -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 7 381.71 403.65 370.59 394.76 353.46 381.5 346 378 341.05 375.67 335.74 373.64 330.35 371.88 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 331.28 369.6 323.87 369.91 329.86 374.29 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 379 380.6 0 40 9 -reference ",
		label=reference,
		lp="379,382.5",
		pos="e,322.43,369.47 381.71,403.65 370.59,394.76 353.46,381.5 346,378 341.05,375.67 335.74,373.64 330.35,371.88"];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 217 260.5 217 279.5 279 279.5 279 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 248 267.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="248,270",
		rects="217,260.5,279,279.5",
		width=0.86111];
	decompose	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 184 215.5 184 234.5 288 234.5 288 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 236 222.5 0 88 16 -run vt decompose ",
		height=0.27778,
		label="run vt decompose",
		pos="236,225",
		rects="184,215.5,288,234.5",
		width=1.4444];
	index -> decompose	[_draw_="c 7 -#000000 B 4 245.69 260.71 244.23 255.47 242.29 248.53 240.53 242.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 242.95 241.81 238.71 235.72 238.24 243.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 249.5 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="249.5,247.5",
		pos="e,238.31,234.27 245.69,260.71 244.23,255.47 242.29,248.53 240.53,242.24"];
	bgzip2	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 152.5 125.5 152.5 144.5 217.5 144.5 217.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 185 132.5 0 49 9 -bgzip VCF ",
		height=0.27778,
		label="bgzip VCF",
		pos="185,135",
		rects="152.5,125.5,217.5,144.5",
		width=0.90278];
	docm_filter -> bgzip2	[_draw_="c 7 -#000000 B 4 185 170.71 185 165.59 185 158.85 185 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 187.45 152.78 185 145.78 182.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 191.5 155.6 0 13 4 -file ",
		label=file,
		lp="191.5,157.5",
		pos="e,185,144.27 185,170.71 185,165.59 185,158.85 185,152.67"];
	decompose -> docm_filter	[_draw_="c 7 -#000000 B 4 226.17 215.71 219.11 209.76 209.44 201.61 201.25 194.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 202.89 192.88 195.96 190.24 199.73 196.63 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 254.5 200.6 0 79 17 -docm_raw_variants ",
		label=docm_raw_variants,
		lp="254.5,202.5",
		pos="e,194.8,189.27 226.17,215.71 219.11,209.76 209.44,201.61 201.25,194.7"];
	index2	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 154 80.5 154 99.5 216 99.5 216 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 185 87.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="185,90",
		rects="154,80.5,216,99.5",
		width=0.86111];
	bgzip2 -> index2	[_draw_="c 7 -#000000 B 4 185 125.71 185 120.59 185 113.85 185 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 187.45 107.78 185 100.78 182.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 191.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="191.5,112.5",
		pos="e,185,99.265 185,125.71 185,120.59 185,113.85 185,107.67"];
	index2 -> docm_variants_vcf	[_draw_="c 7 -#000000 B 4 185 80.71 185 75.59 185 68.85 185 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 187.45 62.78 185 55.78 182.55 62.78 ",
		pos="e,185,54.265 185,80.709 185,75.593 185,68.848 185,62.666"];
	bgzip	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 237.5 305.5 237.5 324.5 302.5 324.5 302.5 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 270 312.5 0 49 9 -bgzip VCF ",
		height=0.27778,
		label="bgzip VCF",
		pos="270,315",
		rects="237.5,305.5,302.5,324.5",
		width=0.90278];
	GATK_haplotype_caller -> bgzip	[_draw_="c 7 -#000000 B 4 275.65 350.71 274.82 345.59 273.72 338.85 272.71 332.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 275.13 332.27 271.59 325.76 270.3 333.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 280.5 335.6 0 13 4 -file ",
		label=file,
		lp="280.5,337.5",
		pos="e,271.35,324.27 275.65,350.71 274.82,345.59 273.72,338.85 272.71,332.67"];
	bgzip -> index	[_draw_="c 7 -#000000 B 4 265.76 305.71 263.02 300.36 259.37 293.22 256.09 286.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 258.29 285.73 252.92 280.61 253.93 287.96 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 266.5 290.6 0 13 3 -vcf ",
		label=vcf,
		lp="266.5,292.5",
		pos="e,252.23,279.27 265.76,305.71 263.02,300.36 259.37,293.22 256.09,286.81"];
}