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	bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 543.5 260.5 543.5 279.5 786.5 279.5 786.5 260.5 ",
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	trimming_adapter_min_overlap -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 13 880.81 313.54 865.57 310.54 848.03 307.33 832 305 796.64 299.87 785.74 308.76 752 297 745.02 294.56 744.81 290.88 \
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	reference_index -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 13 1176.51 313.67 1167.34 310.34 1156.29 306.85 1146 305 1095.01 295.82 961.86 314.22 913 297 906.71 294.78 907.24 \
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	reference_index -> vcf2bed	[_draw_="c 7 -#000000 B 10 1221.18 313.55 1238.94 305.62 1260 291.83 1260 271 1260 271 1260 271 1260 179 1260 170.09 1262.06 160.41 1264.31 \
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		rects="1113,170.5,1253,189.5",
		width=1.9444];
	reference_index -> bam_to_cram	[_draw_="c 7 -#000000 B 4 1196.17 313.6 1193.9 290.82 1187.62 227.55 1184.63 197.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1187.09 197.41 1183.96 190.68 1182.22 197.89 ",
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		label=reference,
		lp="1210,247.5",
		pos="e,1183.8,189.18 1196.2,313.6 1193.9,290.82 1187.6,227.55 1184.6,197.39"];
	bisulfite_qc	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 934.5 125.5 934.5 144.5 1035.5 144.5 1035.5 125.5 ",
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		pos="985,135",
		rects="934.5,125.5,1035.5,144.5",
		width=1.4028];
	reference_index -> bisulfite_qc	[_draw_="c 7 -#000000 B 13 1173.56 313.55 1164.96 310.62 1155.1 307.46 1146 305 1110.28 295.36 983 308 983 271 983 271 983 271 983 179 983 \
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		height=0.27778,
		label="Biscuit pileup",
		pos="1067,180",
		rects="1025.5,170.5,1108.5,189.5",
		width=1.1528];
	reference_index -> pileup	[_draw_="c 7 -#000000 B 10 1189.52 313.59 1178.76 301.05 1159 276.33 1148 252 1141.03 236.58 1149.7 228.12 1139 215 1130.76 204.89 1118.81 \
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	assay_non_cpg_sites -> vcf2bed	[_draw_="c 7 -#000000 B 10 1308 313.7 1308 303.6 1308 286.05 1308 271 1308 271 1308 271 1308 179 1308 167.09 1299.72 156.93 1290.88 149.48 ",
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		label=assay_non_cpg_sites,
		lp="1351,225",
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	trimming_max_uncalled -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 13 1048.18 313.56 1035.58 310.33 1020.68 306.96 1007 305 971.76 299.94 880.48 309.1 847 297 840.73 294.73 841.21 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 795.12 277.26 787.88 278.85 794.53 282.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 875.5 290.6 0 57 12 -max_uncalled ",
		label=max_uncalled,
		lp="875.5,292.5",
		pos="e,786.38,278.66 1048.2,313.56 1035.6,310.33 1020.7,306.96 1007,305 971.76,299.94 880.48,309.1 847,297 840.73,294.73 841.21,290.42 \
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	instrument_data_bams -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 198.73 313.53 210.62 310.5 224.37 307.27 237 305 336.23 287.19 450.07 278.71 535.39 274.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 535.42 277.12 542.3 274.35 535.19 272.23 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 362.5 290.6 0 19 3 -bam ",
		label=bam,
		lp="362.5,292.5",
		pos="e,543.81,274.28 198.73,313.53 210.62,310.5 224.37,307.27 237,305 336.23,287.19 450.07,278.71 535.39,274.67"];
	trimming_min_readlength -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 337.38 313.54 365.9 305.67 410.57 294.24 450 288 477.43 283.66 507.02 280.41 535.21 277.98 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 535.23 280.43 542 277.41 534.82 275.55 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 482 290.6 0 64 14 -min_readlength ",
		label=min_readlength,
		lp="482,292.5",
		pos="e,543.51,277.28 337.38,313.54 365.9,305.67 410.57,294.24 450,288 477.43,283.66 507.02,280.41 535.21,277.98"];
	trimming_adapters -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 462.32 313.64 484.39 306 518.59 294.89 549 288 561.13 285.25 574.08 282.85 586.77 280.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 587.03 283.22 593.56 279.71 586.26 278.38 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 567.5 290.6 0 37 8 -adapters ",
		label=adapters,
		lp="567.5,292.5",
		pos="e,595.06,279.47 462.32,313.64 484.39,306 518.59,294.89 549,288 561.13,285.25 574.08,282.85 586.77,280.78"];
	bedgraph_to_bigwig	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1186 80.5 1186 99.5 1354 99.5 1354 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1270 87.5 0 152 29 -bedGraph to bigwig conversion ",
		height=0.27778,
		label="bedGraph to bigwig conversion",
		pos="1270,90",
		rects="1186,80.5,1354,99.5",
		width=2.3333];
	reference_sizes -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 10 1434.93 313.59 1449.43 305.05 1468 290.34 1468 271 1468 271 1468 271 1468 134 1468 110.46 1413.88 99.78 1362.23 \
94.95 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1500.5 200.6 0 65 15 -reference_sizes ",
		label=reference_sizes,
		lp="1500.5,202.5",
		pos="e,1354,94.223 1434.9,313.59 1449.4,305.05 1468,290.34 1468,271 1468,271 1468,271 1468,134 1468,110.46 1413.9,99.781 1362.2,94.949"];
	QCannotation -> bisulfite_qc	[_draw_="c 7 -#000000 B 10 61.15 313.84 64.71 303.88 70 286.46 70 271 70 271 70 271 70 179 70 135.98 723.77 134.97 926.07 135.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 925.98 138.13 932.99 135.71 926 133.23 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 98.5 223.1 0 57 12 -QCannotation ",
		label=QCannotation,
		lp="98.5,225",
		pos="e,934.5,135.71 61.153,313.84 64.708,303.88 70,286.46 70,271 70,271 70,271 70,179 70,135.98 723.77,134.97 926.07,135.68"];
	read_group_id -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 555.06 313.58 567.97 306.12 587.8 295.3 606 288 611.51 285.79 617.41 283.74 623.28 281.88 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 623.78 284.29 629.77 279.91 622.36 279.6 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 635 290.6 0 58 13 -read_group_id ",
		label=read_group_id,
		lp="635,292.5",
		pos="e,631.22,279.47 555.06,313.58 567.97,306.12 587.8,295.3 606,288 611.51,285.79 617.41,283.74 623.28,281.88"];
	trimming_adapter_trim_end -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 4 665 313.58 665 306.52 665 296.24 665 287.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 667.45 287.78 665 280.78 662.55 287.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 701 290.6 0 72 16 -adapter_trim_end ",
		label=adapter_trim_end,
		lp="701,292.5",
		pos="e,665,279.26 665,313.58 665,306.52 665,296.24 665,287.55"];
	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1027 215.5 1027 234.5 1137 234.5 1137 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1082 222.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="1082,225",
		rects="1027,215.5,1137,234.5",
		width=1.5278];
	merge -> bam_to_cram	[_draw_="c 7 -#000000 B 4 1101.95 215.5 1117.31 208.97 1138.7 199.86 1155.65 192.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1156.21 195.07 1161.69 190.07 1154.29 190.56 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1150.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="1150.5,202.5",
		pos="e,1163.1,189.48 1102,215.5 1117.3,208.97 1138.7,199.86 1155.6,192.64"];
	merge -> bisulfite_qc	[_draw_="c 7 -#000000 B 7 1048.13 215.56 1033.22 210.34 1016.51 202.24 1005 190 995.28 179.67 990.19 164.21 987.59 152.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 990.04 152.28 986.33 145.86 985.23 153.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1014.5 178.1 0 19 3 -bam ",
		label=bam,
		lp="1014.5,180",
		pos="e,986.04,144.37 1048.1,215.56 1033.2,210.34 1016.5,202.24 1005,190 995.28,179.67 990.19,164.21 987.59,152.48"];
	merge -> pileup	[_draw_="c 7 -#000000 B 4 1079.11 215.71 1077.28 210.47 1074.86 203.53 1072.66 197.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1075 196.5 1070.38 190.69 1070.37 198.11 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1084.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="1084.5,202.5",
		pos="e,1069.9,189.27 1079.1,215.71 1077.3,210.47 1074.9,203.53 1072.7,197.24"];
	bam_to_trimmed_fastq_and_biscuit_alignments -> merge	[_draw_="c 7 -#000000 B 4 770.91 260.53 840.03 254.62 932.44 246.02 1018.72 235.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1018.9 237.96 1025.55 234.67 1018.31 233.09 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 955.5 245.6 0 23 4 -bams ",
		label=bams,
		lp="955.5,247.5",
		pos="e,1027.1,234.49 770.91,260.53 840.03,254.62 932.44,246.02 1018.7,235.51"];
	index_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1050.5 80.5 1050.5 99.5 1169.5 99.5 1169.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1110 87.5 0 103 19 -samtools index cram ",
		height=0.27778,
		label="samtools index cram",
		pos="1110,90",
		rects="1050.5,80.5,1169.5,99.5",
		width=1.6528];
	index_cram -> cram	[_draw_="c 7 -#000000 B 4 1110 80.71 1110 75.59 1110 68.85 1110 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1112.45 62.78 1110 55.78 1107.55 62.78 ",
		pos="e,1110,54.265 1110,80.709 1110,75.593 1110,68.848 1110,62.666"];
	vcf2bed -> cpgs	[_draw_="c 7 -#000000 B 7 1234.45 125.6 1218 120.34 1199.04 112.19 1185 100 1178.65 94.49 1168.58 75.75 1161.65 61.89 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1163.94 60.99 1158.65 55.78 1159.54 63.15 ",
		pos="e,1158,54.426 1234.5,125.6 1218,120.34 1199,112.19 1185,100 1178.7,94.49 1168.6,75.753 1161.6,61.889"];
	vcf2bed -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 4 1270 125.71 1270 120.59 1270 113.85 1270 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1272.45 107.78 1270 100.78 1267.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1316.5 110.6 0 93 20 -methylation_bedgraph ",
		label=methylation_bedgraph,
		lp="1316.5,112.5",
		pos="e,1270,99.265 1270,125.71 1270,120.59 1270,113.85 1270,107.67"];
	bedgraph_to_bigwig -> cpg_bigwig	[_draw_="c 7 -#000000 B 4 1258.74 80.5 1250.78 74.5 1239.94 66.32 1230.81 59.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1232.51 57.65 1225.45 55.39 1229.56 61.56 ",
		pos="e,1224.2,54.478 1258.7,80.505 1250.8,74.497 1239.9,66.32 1230.8,59.435"];
	bam_to_cram -> index_cram	[_draw_="c 7 -#000000 B 7 1125.48 170.56 1096.15 164.96 1064.82 156.5 1056 145 1044.03 129.4 1064.05 113.75 1083.02 103.35 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1084.01 105.59 1089.09 100.19 1081.75 101.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1066.5 133.1 0 21 4 -cram ",
		label=cram,
		lp="1066.5,135",
		pos="e,1090.4,99.492 1125.5,170.56 1096.1,164.96 1064.8,156.5 1056,145 1044,129.4 1064.1,113.75 1083,103.35"];
	bisulfite_qc -> gathered_directory	[_draw_="c 7 -#000000 B 4 985.86 125.56 987.34 111.14 990.37 81.48 992.29 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 994.72 63 993 55.79 989.85 62.5 ",
		pos="e,993.15,54.284 985.86,125.56 987.34,111.14 990.37,81.476 992.29,62.727"];
	pileup -> vcf	[_draw_="c 7 -#000000 B 10 1061.88 170.7 1058.08 164.03 1053.18 154.27 1051 145 1044.38 116.88 1042.72 107.96 1050 80 1051.69 73.52 1054.91 \
66.97 1058.23 61.37 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1060.15 62.91 1061.87 55.69 1056.03 60.27 ",
		pos="e,1062.7,54.418 1061.9,170.7 1058.1,164.03 1053.2,154.27 1051,145 1044.4,116.88 1042.7,107.96 1050,80 1051.7,73.522 1054.9,66.969 \
1058.2,61.369"];
	pileup -> vcf2bed	[_draw_="c 7 -#000000 B 4 1107.11 170.5 1140.05 163.53 1186.83 153.62 1221.8 146.21 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1222.16 148.64 1228.5 144.79 1221.14 143.85 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1192.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="1192.5,157.5",
		pos="e,1230,144.48 1107.1,170.5 1140.1,163.53 1186.8,153.62 1221.8,146.21"];
	pileup -> bisulfite_qc	[_draw_="c 7 -#000000 B 7 1044.55 170.51 1038.44 167.98 1031.88 165.05 1026 162 1018.53 158.12 1010.65 153.31 1003.81 148.89 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1005.33 146.95 998.14 145.13 1002.63 151.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1032.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="1032.5,157.5",
		pos="e,996.88,144.3 1044.6,170.51 1038.4,167.98 1031.9,165.05 1026,162 1018.5,158.12 1010.6,153.31 1003.8,148.89"];
}