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		pos="479,90",
		rects="407.5,80.5,550.5,99.5",
		width=1.9861];
	gene_transcript_lookup_table -> transcript_to_gene	[_draw_="c 7 -#000000 B 7 415.27 268.82 419.55 264.2 424.59 258.15 428 252 455.22 202.98 470.23 137.37 476.08 107.29 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 478.45 107.98 477.33 100.65 473.63 107.08 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 520.5 178.1 0 121 28 -gene_transcript_lookup_table ",
		label=gene_transcript_lookup_table,
		lp="520.5,180",
		pos="e,477.61,99.162 415.27,268.82 419.55,264.2 424.59,258.15 428,252 455.22,202.98 470.23,137.37 476.08,107.29"];
	trimming_adapters -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 7 731.17 268.55 741.12 265.61 752.52 262.45 763 260 807.96 249.49 858.95 241.29 900.1 235.58 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 900.35 238.02 906.95 234.64 899.69 233.16 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 863.5 245.6 0 37 8 -adapters ",
		label=adapters,
		lp="863.5,247.5",
		pos="e,908.45,234.43 731.17,268.55 741.12,265.61 752.52,262.45 763,260 807.96,249.49 858.95,241.29 900.1,235.58"];
	trimming_min_readlength -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 7 854.13 268.57 871.01 261.29 896.38 250.76 919 243 925.4 240.8 932.26 238.67 938.96 236.69 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 939.23 239.16 945.27 234.87 937.87 234.46 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 951 245.6 0 64 14 -min_readlength ",
		label=min_readlength,
		lp="951,247.5",
		pos="e,946.73,234.45 854.13,268.57 871.01,261.29 896.38,250.76 919,243 925.4,240.8 932.26,238.67 938.96,236.69"];
	trimming_adapter_min_overlap -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 4 993.19 268.58 990.82 261.45 987.34 251.02 984.42 242.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 986.77 241.57 982.23 235.7 982.12 243.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1030 245.6 0 86 19 -adapter_min_overlap ",
		label=adapter_min_overlap,
		lp="1030,247.5",
		pos="e,981.75,234.26 993.19,268.58 990.82,261.45 987.34,251.02 984.42,242.27"];
	ribosomal_intervals -> generate_qc_metrics	[_draw_="c 7 -#000000 B 10 73 268.7 73 258.6 73 241.05 73 226 73 226 73 226 73 134 73 118.65 83.94 108.78 98.11 102.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 98.74 104.82 104.36 99.98 96.95 100.26 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 113 178.1 0 80 19 -ribosomal_intervals ",
		label=ribosomal_intervals,
		lp="113,180",
		pos="e,105.77,99.424 73,268.7 73,258.6 73,241.05 73,226 73,226 73,226 73,134 73,118.65 83.941,108.78 98.107,102.43"];
	reference_annotation -> stringtie	[_draw_="c 7 -#000000 B 16 1773.8 268.5 1763.39 265.72 1751.71 262.67 1741 260 1622.78 230.58 1593.81 220.04 1474 198 1383.56 181.36 1360.22 \
181.65 1269 170 1205.51 161.89 1189.59 160.22 1126 153 1085.36 148.38 1038.78 143.38 1006.97 140 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1007.54 137.6 1000.32 139.29 1007.02 142.47 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1563.5 200.6 0 89 20 -reference_annotation ",
		label=reference_annotation,
		lp="1563.5,202.5",
		pos="e,998.82,139.13 1773.8,268.5 1763.4,265.72 1751.7,262.67 1741,260 1622.8,230.58 1593.8,220.04 1474,198 1383.6,181.36 1360.2,181.65 \
1269,170 1205.5,161.89 1189.6,160.22 1126,153 1085.4,148.38 1038.8,143.38 1007,140"];
	instrument_data_bams -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 7 1134.13 268.53 1119.06 260.81 1095.55 249.64 1074 243 1065.48 240.37 1056.4 238.11 1047.35 236.16 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1047.91 233.77 1040.56 234.77 1046.92 238.57 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1106.5 245.6 0 19 3 -bam ",
		label=bam,
		lp="1106.5,247.5",
		pos="e,1039.1,234.46 1134.1,268.53 1119.1,260.81 1095.5,249.64 1074,243 1065.5,240.37 1056.4,238.11 1047.4,236.16"];
	reference_index -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 7 1243.11 268.56 1234.4 265.56 1224.32 262.35 1215 260 1170.31 248.74 1119.86 240.85 1077.11 235.52 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1077.41 233.09 1070.17 234.67 1076.82 237.95 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1209 245.6 0 66 15 -reference_index ",
		label=reference_index,
		lp="1209,247.5",
		pos="e,1068.7,234.49 1243.1,268.56 1234.4,265.56 1224.3,262.35 1215,260 1170.3,248.74 1119.9,240.85 1077.1,235.52"];
	trimming_max_uncalled -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 7 1356.19 268.57 1327.7 260.6 1282.73 248.99 1243 243 1198.95 236.36 1150.38 232.31 1107.04 229.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1107.36 227.4 1100.24 229.47 1107.09 232.3 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1318.5 245.6 0 57 12 -max_uncalled ",
		label=max_uncalled,
		lp="1318.5,247.5",
		pos="e,1098.7,229.38 1356.2,268.57 1327.7,260.6 1282.7,248.99 1243,243 1198.9,236.36 1150.4,232.31 1107,229.84"];
	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 914 170.5 914 189.5 1024 189.5 1024 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 969 177.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="969,180",
		rects="914,170.5,1024,189.5",
		width=1.5278];
	index_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 671 125.5 671 144.5 763 144.5 763 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 717 132.5 0 76 14 -samtools index ",
		height=0.27778,
		label="samtools index",
		pos="717,135",
		rects="671,125.5,763,144.5",
		width=1.2778];
	merge -> index_bam	[_draw_="c 7 -#000000 B 4 919.21 170.5 876.5 163.22 815.06 152.73 771.13 145.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 771.67 142.84 764.36 144.08 770.85 147.67 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 874.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="874.5,157.5",
		pos="e,762.87,143.83 919.21,170.5 876.5,163.22 815.06,152.73 771.13,145.24"];
	merge -> stringtie	[_draw_="c 7 -#000000 B 4 969 170.71 969 165.59 969 158.85 969 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 971.45 152.78 969 145.78 966.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 978.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="978.5,157.5",
		pos="e,969,144.27 969,170.71 969,165.59 969,158.85 969,152.67"];
	index_bam -> final_bam	[_draw_="c 7 -#000000 B 4 717 125.56 717 111.14 717 81.48 717 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 719.45 62.8 717 55.8 714.55 62.8 ",
		pos="e,717,54.284 717,125.56 717,111.14 717,81.476 717,62.727"];
	index_bam -> generate_qc_metrics	[_draw_="c 7 -#000000 B 7 671.23 132.95 603.84 131.15 474.02 126.68 364 117 317.74 112.93 265.8 106.24 226.04 100.66 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 226.52 98.26 219.24 99.7 225.83 103.11 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 373.5 110.6 0 19 3 -bam ",
		label=bam,
		lp="373.5,112.5",
		pos="e,217.75,99.492 671.23,132.95 603.84,131.15 474.02,126.68 364,117 317.74,112.93 265.8,106.24 226.04,100.66"];
	generate_qc_metrics -> metrics	[_draw_="c 7 -#000000 B 4 161 80.71 161 75.59 161 68.85 161 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 163.45 62.78 161 55.78 158.55 62.78 ",
		pos="e,161,54.265 161,80.709 161,75.593 161,68.848 161,62.666"];
	generate_qc_metrics -> chart	[_draw_="c 7 -#000000 B 4 151.17 80.71 144.11 74.76 134.44 66.61 126.25 59.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 127.89 57.88 120.96 55.24 124.73 61.63 ",
		pos="e,119.8,54.265 151.17,80.709 144.11,74.76 134.44,66.609 126.25,59.701"];
	kallisto -> fusion_evidence	[_draw_="c 7 -#000000 B 7 339.88 125.58 338.6 112.83 337.86 88.27 348 71 350.68 66.44 354.56 62.48 358.76 59.15 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 359.95 61.31 364.28 55.3 357.14 57.3 ",
		pos="e,365.52,54.431 339.88,125.58 338.6,112.83 337.86,88.275 348,71 350.68,66.435 354.56,62.482 358.76,59.151"];
	kallisto -> transcript_abundance_h5	[_draw_="c 7 -#000000 B 4 333.33 125.56 319.68 110.54 291.01 79.01 274.16 60.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 276.07 58.94 269.55 55.4 272.44 62.23 ",
		pos="e,268.53,54.284 333.33,125.56 319.68,110.54 291.01,79.013 274.16,60.472"];
	kallisto -> transcript_abundance_tsv	[_draw_="c 7 -#000000 B 7 345.56 125.58 348.8 120.12 353.54 113.1 359 108 386.97 81.88 427.56 65.9 459.01 56.71 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 459.67 59.07 465.74 54.82 458.34 54.36 ",
		pos="e,467.2,54.413 345.56,125.58 348.8,120.12 353.54,113.1 359,108 386.97,81.881 427.56,65.896 459.01,56.714"];
	kallisto -> transcript_to_gene	[_draw_="c 7 -#000000 B 10 365.63 125.57 371.78 123.11 378.26 120.21 384 117 389.82 113.75 389.92 110.74 396 108 401.35 105.59 407.05 103.52 \
412.85 101.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 413.29 104.17 419.36 99.91 411.95 99.45 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 435.5 110.6 0 79 19 -transcript_table_h5 ",
		label=transcript_table_h5,
		lp="435.5,112.5",
		pos="e,420.81,99.496 365.63,125.57 371.78,123.11 378.26,120.21 384,117 389.82,113.75 389.92,110.74 396,108 401.35,105.59 407.05,103.52 \
412.85,101.75"];
	transcript_to_gene -> gene_abundance	[_draw_="c 7 -#000000 B 7 513.03 80.54 532.19 75.66 556.5 69.27 578 63 584.33 61.16 591.05 59.09 597.5 57.05 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 598.11 59.42 604.03 54.95 596.62 54.75 ",
		pos="e,605.48,54.492 513.03,80.542 532.19,75.662 556.5,69.265 578,63 584.33,61.156 591.05,59.088 597.5,57.046"];
	stringtie -> stringtie_transcript_gtf	[_draw_="c 7 -#000000 B 4 954.52 125.56 927.85 110.02 870.82 76.78 839.57 58.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 840.8 56.45 833.52 55.05 838.34 60.69 ",
		pos="e,832.21,54.284 954.52,125.56 927.85,110.02 870.82,76.78 839.57,58.57"];
	stringtie -> stringtie_gene_expression_tsv	[_draw_="c 7 -#000000 B 4 969 125.56 969 111.14 969 81.48 969 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 971.45 62.8 969 55.8 966.55 62.8 ",
		pos="e,969,54.284 969,125.56 969,111.14 969,81.476 969,62.727"];
	bam_to_trimmed_fastq_and_hisat_alignments -> merge	[_draw_="c 7 -#000000 B 4 977.07 215.71 975.85 210.47 974.24 203.53 972.78 197.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 975.24 197 971.27 190.74 970.46 198.11 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 985.5 200.6 0 23 4 -bams ",
		label=bams,
		lp="985.5,202.5",
		pos="e,970.92,189.27 977.07,215.71 975.85,210.47 974.24,203.53 972.78,197.24"];
	bam_to_trimmed_fastq_and_hisat_alignments -> kallisto	[_draw_="c 7 -#000000 B 4 917.54 215.52 792.49 198.27 510.44 159.37 393.42 143.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 394.05 140.84 386.78 142.31 393.38 145.7 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 736 178.1 0 26 6 -fastqs ",
		label=fastqs,
		lp="736,180",
		pos="e,385.28,142.11 917.54,215.52 792.49,198.27 510.44,159.37 393.42,143.23"];
}