digraph workflow {
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			width=1.7917];
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			fillcolor="#94DDF4",
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		trimming_adapter_trim_end	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1005.5 313.5 1005.5 332.5 1158.5 332.5 1158.5 313.5 ",
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			pos="1082,323",
			rects="1005.5,313.5,1158.5,332.5",
			width=2.125];
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	subgraph cluster_outputs {
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			lheight=0.15,
			lp="293,17.5",
			lwidth=1.28,
			rank=same,
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		vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 380 35.5 380 54.5 412 54.5 412 35.5 ",
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			fillcolor="#94DDF4",
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			label=vcf,
			pos="396,45",
			rects="380,35.5,412,54.5",
			width=0.44444];
		gathered_directory	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 461.5 35.5 461.5 54.5 570.5 54.5 570.5 35.5 ",
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			label=gathered_directory,
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			rects="461.5,35.5,570.5,54.5",
			width=1.5139];
		cpgs	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 336.5 35.5 336.5 54.5 375.5 54.5 375.5 35.5 ",
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			fillcolor="#94DDF4",
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			label=cpgs,
			pos="356,45",
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			width=0.54167];
		cram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 416.5 35.5 416.5 54.5 457.5 54.5 457.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 437 42.5 0 25 4 -cram ",
			fillcolor="#94DDF4",
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			label=cram,
			pos="437,45",
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			width=1.1806];
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	bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 429.5 260.5 429.5 279.5 672.5 279.5 672.5 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 551 267.5 0 227 44 -bam to trimmed fastqs and biscuit alignments ",
		fillcolor="#F3CEA1",
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		pos="551,270",
		rects="429.5,260.5,672.5,279.5",
		width=3.375];
	read_group_id -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 13 313.29 313.55 321.46 310.44 331.06 307.16 340 305 367.44 298.38 376.84 307.6 403 297 409.18 294.5 408.82 290.5 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 434.44 283.97 440.59 279.83 433.2 279.23 ",
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		label=read_group_id,
		lp="444,292.5",
		pos="e,442.05,279.44 313.29,313.55 321.46,310.44 331.06,307.16 340,305 367.44,298.38 376.84,307.6 403,297 409.18,294.5 408.82,290.5 415,\
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		label="bedGraph to bigwig conversion",
		pos="198,90",
		rects="114,80.5,282,99.5",
		width=2.3333];
	reference_sizes -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 10 53.51 316.08 27.4 309.86 0 297.11 0 271 0 271 0 271 0 134 0 110.46 54.12 99.78 105.77 94.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 105.76 97.41 112.52 94.36 105.33 92.53 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 32.5 200.6 0 65 15 -reference_sizes ",
		label=reference_sizes,
		lp="32.5,202.5",
		pos="e,114.03,94.223 53.513,316.08 27.399,309.86 0,297.11 0,271 0,271 0,271 0,134 0,110.46 54.12,99.781 105.77,94.949"];
	bisulfite_qc	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 479.5 125.5 479.5 144.5 580.5 144.5 580.5 125.5 ",
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		fillcolor="#F3CEA1",
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		label="Bisulfite QC tools",
		pos="530,135",
		rects="479.5,125.5,580.5,144.5",
		width=1.4028];
	QCannotation -> bisulfite_qc	[_draw_="c 7 -#000000 B 10 1317.32 313.62 1294.21 303.15 1259 284.91 1259 271 1259 271 1259 271 1259 179 1259 145.51 762.32 138.01 588.9 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1287.5 223.1 0 57 12 -QCannotation ",
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		pos="e,580.39,136.34 1317.3,313.62 1294.2,303.15 1259,284.91 1259,271 1259,271 1259,271 1259,179 1259,145.51 762.32,138.01 588.9,136.41"];
	trimming_max_uncalled -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 10 431.7 313.55 444.35 308.9 460.13 302.9 474 297 482.6 293.34 484.27 291.32 493 288 498.66 285.84 504.72 283.8 510.71 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 521.5 290.6 0 57 12 -max_uncalled ",
		label=max_uncalled,
		lp="521.5,292.5",
		pos="e,518.79,279.46 431.7,313.55 444.35,308.9 460.13,302.9 474,297 482.6,293.34 484.27,291.32 493,288 498.66,285.84 504.72,283.8 510.71,\
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	trimming_min_readlength -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 4 551 313.58 551 306.52 551 296.24 551 287.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 553.45 287.78 551 280.78 548.55 287.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 583 290.6 0 64 14 -min_readlength ",
		label=min_readlength,
		lp="583,292.5",
		pos="e,551,279.26 551,313.58 551,306.52 551,296.24 551,287.55"];
	reference_index -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 13 220.06 313.52 228.93 310.4 239.34 307.12 249 305 280.45 298.09 290.49 307.3 321 297 328.37 294.51 328.6 290.37 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 421.19 278.86 428 275.94 420.85 273.98 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 369 290.6 0 66 15 -reference_index ",
		label=reference_index,
		lp="369,292.5",
		pos="e,429.51,275.83 220.06,313.52 228.93,310.4 239.34,307.12 249,305 280.45,298.09 290.49,307.3 321,297 328.37,294.51 328.6,290.37 336,\
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	bam_to_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 383 170.5 383 189.5 523 189.5 523 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 453 177.5 0 124 22 -BAM to CRAM conversion ",
		height=0.27778,
		label="BAM to CRAM conversion",
		pos="453,180",
		rects="383,170.5,523,189.5",
		width=1.9444];
	reference_index -> bam_to_cram	[_draw_="c 7 -#000000 B 10 223.54 313.6 235.51 309.26 249.79 303.52 262 297 329.86 260.75 335.46 232.94 404 198 408.01 195.96 412.32 194.06 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 417.35 194.7 423.05 189.95 415.63 190.11 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 357 245.6 0 40 9 -reference ",
		label=reference,
		lp="357,247.5",
		pos="e,424.47,189.42 223.54,313.6 235.51,309.26 249.79,303.52 262,297 329.86,260.75 335.46,232.94 404,198 408.01,195.96 412.32,194.06 \
416.67,192.34"];
	pileup	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 295.5 170.5 295.5 189.5 378.5 189.5 378.5 170.5 ",
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		height=0.27778,
		label="Biscuit pileup",
		pos="337,180",
		rects="295.5,170.5,378.5,189.5",
		width=1.1528];
	reference_index -> pileup	[_draw_="c 7 -#000000 B 13 203.48 313.74 214.53 297.72 241.08 262.31 272 243 282.25 236.6 289.09 243.17 298 235 311.08 223.01 301.98 211.91 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 317.64 196.46 321.49 190.12 314.53 192.67 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 292 245.6 0 40 9 -reference ",
		label=reference,
		lp="292,247.5",
		pos="e,322.66,189.16 203.48,313.74 214.53,297.72 241.08,262.31 272,243 282.25,236.6 289.09,243.17 298,235 311.08,223.01 301.98,211.91 \
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	vcf2bed	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 7 125.5 7 144.5 389 144.5 389 125.5 ",
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		pos="198,135",
		rects="7,125.5,389,144.5",
		width=5.3056];
	reference_index -> vcf2bed	[_draw_="c 7 -#000000 B 10 198 313.7 198 303.6 198 286.05 198 271 198 271 198 271 198 179 198 170.31 198 160.63 198 152.65 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 218 223.1 0 40 9 -reference ",
		label=reference,
		lp="218,225",
		pos="e,198,144.24 198,313.7 198,303.6 198,286.05 198,271 198,271 198,271 198,179 198,170.31 198,160.63 198,152.65"];
	reference_index -> bisulfite_qc	[_draw_="c 7 -#000000 B 10 220.34 313.56 237.4 305.49 258 291.51 258 271 258 271 258 271 258 179 258 132.36 411.36 150.22 471.25 145.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 471.52 147.81 478.2 144.61 470.98 142.94 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 278 223.1 0 40 9 -reference ",
		label=reference,
		lp="278,225",
		pos="e,479.71,144.44 220.34,313.56 237.4,305.49 258,291.51 258,271 258,271 258,271 258,179 258,132.36 411.36,150.22 471.25,145.38"];
	instrument_data_bams -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 10 1196.37 313.53 1184.73 310.52 1171.32 307.32 1159 305 1100.44 293.98 1085.39 292.85 1026 288 909.32 278.48 776.09 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 680.78 270 673.74 272.32 680.69 274.9 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1119.5 290.6 0 19 3 -bam ",
		label=bam,
		lp="1119.5,292.5",
		pos="e,672.22,272.29 1196.4,313.53 1184.7,310.52 1171.3,307.32 1159,305 1100.4,293.98 1085.4,292.85 1026,288 909.32,278.48 776.09,274.29 \
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	trimming_adapter_min_overlap -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 4 760.27 313.52 716.48 304.62 647.65 290.64 600.98 281.16 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 601.66 278.79 594.31 279.8 600.68 283.6 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 719 290.6 0 86 19 -adapter_min_overlap ",
		label=adapter_min_overlap,
		lp="719,292.5",
		pos="e,592.83,279.5 760.27,313.52 716.48,304.62 647.65,290.64 600.98,281.16"];
	trimming_adapters -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 919.77 313.56 909.62 310.53 897.85 307.29 887 305 819.75 290.78 743.63 282.45 680.86 277.6 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 859.5 290.6 0 37 8 -adapters ",
		label=adapters,
		lp="859.5,292.5",
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	trimming_adapter_trim_end -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 10 1045.07 313.57 1031.56 310.64 1016.13 307.47 1002 305 947.64 295.48 933.94 293.21 879 288 813.81 281.82 741.09 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 680.9 272.72 673.81 274.87 680.7 277.62 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 989 290.6 0 72 16 -adapter_trim_end ",
		label=adapter_trim_end,
		lp="989,292.5",
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	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 450 215.5 450 234.5 560 234.5 560 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 505 222.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="505,225",
		rects="450,215.5,560,234.5",
		width=1.5278];
	bam_to_trimmed_fastq_and_biscuit_alignments -> merge	[_draw_="c 7 -#000000 B 4 542.13 260.71 535.77 254.76 527.05 246.61 519.66 239.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 521.73 238.29 514.95 235.3 518.39 241.87 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 543.5 245.6 0 23 4 -bams ",
		label=bams,
		lp="543.5,247.5",
		pos="e,513.84,234.27 542.13,260.71 535.77,254.76 527.05,246.61 519.66,239.7"];
	merge -> bam_to_cram	[_draw_="c 7 -#000000 B 4 494.73 215.5 487.6 209.62 477.96 201.64 469.74 194.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 471.37 193.02 464.42 190.44 468.25 196.79 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 492.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="492.5,202.5",
		pos="e,463.25,189.48 494.73,215.5 487.6,209.62 477.96,201.64 469.74,194.84"];
	merge -> pileup	[_draw_="c 7 -#000000 B 4 471.81 215.5 445 208.64 407.14 198.95 378.36 191.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 378.98 189.22 371.59 189.85 377.76 193.96 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 445.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="445.5,202.5",
		pos="e,370.12,189.48 471.81,215.5 445,208.64 407.14,198.95 378.36,191.59"];
	merge -> bisulfite_qc	[_draw_="c 7 -#000000 B 7 510.48 215.71 514.61 209.04 520.04 199.29 523 190 526.86 177.88 528.59 163.58 529.37 152.74 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 531.82 152.88 529.76 145.76 526.92 152.61 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 536.5 178.1 0 19 3 -bam ",
		label=bam,
		lp="536.5,180",
		pos="e,529.84,144.25 510.48,215.71 514.61,209.04 520.04,199.29 523,190 526.86,177.88 528.59,163.58 529.37,152.74"];
	index_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 403.5 80.5 403.5 99.5 522.5 99.5 522.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 463 87.5 0 103 19 -samtools index cram ",
		height=0.27778,
		label="samtools index cram",
		pos="463,90",
		rects="403.5,80.5,522.5,99.5",
		width=1.6528];
	index_cram -> cram	[_draw_="c 7 -#000000 B 4 457.99 80.71 454.68 75.24 450.24 67.9 446.3 61.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 448.5 60.28 442.78 55.56 444.31 62.82 ",
		pos="e,442,54.265 457.99,80.709 454.68,75.236 450.24,67.899 446.3,61.381"];
	bedgraph_to_bigwig -> cpg_bedgraph	[_draw_="c 7 -#000000 B 4 216.18 80.5 229.91 74.09 248.95 65.19 264.25 58.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 265.19 60.3 270.49 55.12 263.11 55.86 ",
		pos="e,271.86,54.478 216.18,80.505 229.91,74.085 248.95,65.188 264.25,58.036"];
	bam_to_cram -> index_cram	[_draw_="c 7 -#000000 B 7 453.36 170.56 453.88 159.91 455 141.04 457 125 457.72 119.22 458.76 112.94 459.77 107.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 462.11 108.17 461 100.84 457.29 107.26 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 467.5 133.1 0 21 4 -cram ",
		label=cram,
		lp="467.5,135",
		pos="e,461.28,99.348 453.36,170.56 453.88,159.91 455,141.04 457,125 457.72,119.22 458.76,112.94 459.77,107.36"];
	pileup -> vcf	[_draw_="c 7 -#000000 B 7 358.55 170.53 369.61 165 382.17 156.63 389 145 404.05 119.38 402 83.34 399.06 62.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 401.52 62.43 397.99 55.91 396.68 63.21 ",
		pos="e,397.75,54.413 358.55,170.53 369.61,165 382.17,156.63 389,145 404.05,119.38 402,83.342 399.06,62.556"];
	pileup -> vcf2bed	[_draw_="c 7 -#000000 B 4 309.54 170.5 287.74 163.76 257.1 154.28 233.45 146.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 234.26 144.65 226.85 144.93 232.81 149.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 285.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="285.5,157.5",
		pos="e,225.4,144.48 309.54,170.5 287.74,163.76 257.1,154.28 233.45,146.97"];
	pileup -> bisulfite_qc	[_draw_="c 7 -#000000 B 4 375.13 170.5 406.32 163.56 450.55 153.7 483.76 146.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 484.17 148.72 490.47 144.81 483.11 143.94 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 456.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="456.5,157.5",
		pos="e,491.95,144.48 375.13,170.5 406.32,163.56 450.55,153.7 483.76,146.3"];
	vcf2bed -> cpgs	[_draw_="c 7 -#000000 B 7 224.41 125.62 241.86 119.59 264.94 110.66 284 100 304.86 88.33 326.5 71.33 340.54 59.53 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 341.89 61.59 345.63 55.19 338.71 57.86 ",
		pos="e,346.78,54.203 224.41,125.62 241.86,119.59 264.94,110.66 284,100 304.86,88.332 326.5,71.328 340.54,59.53"];
	vcf2bed -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 4 198 125.71 198 120.59 198 113.85 198 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 200.45 107.78 198 100.78 195.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 218 110.6 0 40 8 -bedgraph ",
		label=bedgraph,
		lp="218,112.5",
		pos="e,198,99.265 198,125.71 198,120.59 198,113.85 198,107.67"];
	bisulfite_qc -> gathered_directory	[_draw_="c 7 -#000000 B 7 529.1 125.55 527.92 114.9 525.69 96.04 523 80 522.03 74.23 520.79 67.94 519.62 62.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 522.09 62.16 518.22 55.83 517.3 63.19 ",
		pos="e,517.9,54.351 529.1,125.55 527.92,114.9 525.69,96.036 523,80 522.03,74.227 520.79,67.941 519.62,62.361"];
}