digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 593 494 593 494 0 ",
		bb="0,0,494,593",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 530 8 585 404 585 404 530 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 573 0 84 15 -Workflow Inputs ",
			bb="8,530,404,585",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,575.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 332.5 538.5 332.5 557.5 395.5 557.5 395.5 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 364 545.5 0 47 9 -reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference,
			pos="364,548",
			rects="332.5,538.5,395.5,557.5",
			width=0.875];
		insert_size	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 259.5 538.5 259.5 557.5 328.5 557.5 328.5 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 294 545.5 0 53 11 -insert_size ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=insert_size,
			pos="294,548",
			rects="259.5,538.5,328.5,557.5",
			width=0.95833];
		interval_list	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 96 538.5 96 557.5 170 557.5 170 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 133 545.5 0 58 13 -interval_list ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=interval_list,
			pos="133,548",
			rects="96,538.5,170,557.5",
			width=1.0278];
		tumor_cram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 538.5 16 557.5 92 557.5 92 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 54 545.5 0 60 10 -tumor_cram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_cram,
			pos="54,548",
			rects="16,538.5,92,557.5",
			width=1.0556];
		normal_cram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 174.5 538.5 174.5 557.5 255.5 557.5 255.5 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 215 545.5 0 65 11 -normal_cram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_cram,
			pos="215,548",
			rects="174.5,538.5,255.5,557.5",
			width=1.125];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 181 8 181 63 356 63 356 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 235 15 0 92 16 -Workflow Outputs ",
			bb="181,8,356,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="235,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		unfiltered_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 189.5 35.5 189.5 54.5 272.5 54.5 272.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 231 42.5 0 67 14 -unfiltered_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=unfiltered_vcf,
			pos="231,45",
			rects="189.5,35.5,272.5,54.5",
			width=1.1528];
		filtered_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 276.5 35.5 276.5 54.5 347.5 54.5 347.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 312 42.5 0 55 12 -filtered_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=filtered_vcf,
			pos="312,45",
			rects="276.5,35.5,347.5,54.5",
			width=0.98611];
	}
	somaticfilter	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 259.5 350.5 259.5 369.5 388.5 369.5 388.5 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 324 357.5 0 113 24 -pindel somatic filter v1 ",
		height=0.27778,
		label="pindel somatic filter v1",
		pos="324,360",
		rects="259.5,350.5,388.5,369.5",
		width=1.7917];
	reference -> somaticfilter	[_draw_="c 7 -#000000 B 13 377.61 538.68 390.2 529.82 407 514.53 407 496 407 496 407 496 407 404 407 392.03 408.64 386.28 400 378 398.42 \
376.49 396.74 375.1 394.97 373.82 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 396.31 371.77 389.06 370.23 393.77 375.96 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 427 448.1 0 40 9 -reference ",
		label=reference,
		lp="427,450",
		pos="e,387.77,369.44 377.61,538.68 390.2,529.82 407,514.53 407,496 407,496 407,496 407,404 407,392.03 408.64,386.28 400,378 398.42,376.49 \
396.74,375.1 394.97,373.82"];
	pindel_cat	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 170.5 440.5 170.5 459.5 303.5 459.5 303.5 440.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 237 447.5 0 117 21 -Per-chromosome pindel ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="Per-chromosome pindel",
		pos="237,450",
		rects="170.5,440.5,303.5,459.5",
		width=1.8472];
	reference -> pindel_cat	[_draw_="c 7 -#000000 B 7 362.72 538.52 360.28 525.26 353.73 499.63 338 485 326.46 474.27 311.43 466.92 296.49 461.88 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 297.57 459.65 290.16 459.9 296.11 464.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 371 493.1 0 40 9 -reference ",
		label=reference,
		lp="371,495",
		pos="e,288.71,459.45 362.72,538.52 360.28,525.26 353.73,499.63 338,485 326.46,474.27 311.43,466.92 296.49,461.88"];
	region_filter	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 181.5 215.5 181.5 234.5 322.5 234.5 322.5 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 252 222.5 0 125 25 -SelectVariants (GATK 3.6) ",
		height=0.27778,
		label="SelectVariants (GATK 3.6)",
		pos="252,225",
		rects="181.5,215.5,322.5,234.5",
		width=1.9583];
	reference -> region_filter	[_draw_="c 7 -#000000 B 22 362.36 538.64 360.71 530.17 358.11 516.69 356 505 349.43 468.62 362.77 453.59 342 423 328.55 403.2 318.37 403.51 \
296 395 277.42 387.94 264.74 402.26 252 387 244.6 378.13 252 372.56 252 361 252 361 252 361 252 269 252 260.31 252 250.63 252 242.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 254.45 242.76 252 235.76 249.55 242.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 272 380.6 0 40 9 -reference ",
		label=reference,
		lp="272,382.5",
		pos="e,252,234.24 362.36,538.64 360.71,530.17 358.11,516.69 356,505 349.43,468.62 362.77,453.59 342,423 328.55,403.2 318.37,403.51 296,\
395 277.42,387.94 264.74,402.26 252,387 244.6,378.13 252,372.56 252,361 252,361 252,361 252,269 252,260.31 252,250.63 252,242.65"];
	filter	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 201.5 80.5 201.5 99.5 302.5 99.5 302.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 252 87.5 0 85 18 -fp_filter workflow ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="fp_filter workflow",
		pos="252,90",
		rects="201.5,80.5,302.5,99.5",
		width=1.4028];
	reference -> filter	[_draw_="c 7 -#000000 B 10 395.48 542.33 421.43 536.5 454 523.66 454 496 454 496 454 496 454 134 454 104.46 370.34 95.14 310.7 92.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 311.07 89.8 303.96 91.94 310.85 94.7 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 474 313.1 0 40 9 -reference ",
		label=reference,
		lp="474,315",
		pos="e,302.45,91.87 395.48,542.33 421.43,536.5 454,523.66 454,496 454,496 454,496 454,134 454,104.46 370.34,95.135 310.7,92.237"];
	insert_size -> pindel_cat	[_draw_="c 7 -#000000 B 7 294.95 538.68 295.98 526.09 296.26 501.88 286 485 280.54 476.01 271.7 468.81 263.02 463.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 264.44 461.37 257.15 460 261.99 465.62 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 315 493.1 0 44 11 -insert_size ",
		label=insert_size,
		lp="315,495",
		pos="e,255.84,459.24 294.95,538.68 295.98,526.09 296.26,501.88 286,485 280.54,476.01 271.7,468.81 263.02,463.38"];
	get_chromosome_list	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 107 485.5 107 504.5 229 504.5 229 485.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 168 492.5 0 106 19 -get_chromosome_list ",
		height=0.27778,
		label=get_chromosome_list,
		pos="168,495",
		rects="107,485.5,229,504.5",
		width=1.6944];
	interval_list -> get_chromosome_list	[_draw_="c 7 -#000000 B 4 138.78 538.58 143.88 531.15 151.43 520.15 157.58 511.19 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 159.53 512.67 161.47 505.51 155.49 509.9 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 178.5 515.6 0 47 13 -interval_list ",
		label=interval_list,
		lp="178.5,517.5",
		pos="e,162.33,504.26 138.78,538.58 143.88,531.15 151.43,520.15 157.58,511.19"];
	interval_list -> region_filter	[_draw_="c 7 -#000000 B 10 123.28 538.68 113.54 529.36 100 513.3 100 496 100 496 100 496 100 269 100 251.78 136.57 241.11 173.83 234.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 173.78 237.2 180.29 233.65 172.99 232.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 123.5 380.6 0 47 13 -interval_list ",
		label=interval_list,
		lp="123.5,382.5",
		pos="e,181.78,233.4 123.28,538.68 113.54,529.36 100,513.3 100,496 100,496 100,496 100,269 100,251.78 136.57,241.11 173.83,234.7"];
	tumor_cram -> pindel_cat	[_draw_="c 7 -#000000 B 7 51.33 538.62 47.71 525.49 43.1 500.04 56 485 69.93 468.75 118.79 460.2 162.23 455.74 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 162.32 458.19 169.05 455.07 161.84 453.31 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 80.5 493.1 0 49 10 -tumor_cram ",
		label=tumor_cram,
		lp="80.5,495",
		pos="e,170.56,454.92 51.325,538.62 47.712,525.49 43.103,500.04 56,485 69.929,468.75 118.79,460.2 162.23,455.74"];
	tumor_cram -> filter	[_draw_="c 7 -#000000 B 10 48.26 538.77 42.04 529.02 33 512.09 33 496 33 496 33 496 33 134 33 101.21 128.74 92.98 193.61 91.17 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 193.31 93.63 200.24 91.01 193.19 88.73 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 43.5 313.1 0 21 4 -cram ",
		label=cram,
		lp="43.5,315",
		pos="e,201.76,90.972 48.262,538.77 42.044,529.02 33,512.09 33,496 33,496 33,496 33,134 33,101.21 128.74,92.981 193.61,91.171"];
	normal_cram -> pindel_cat	[_draw_="c 7 -#000000 B 7 218.22 538.76 221.39 530.38 226.14 516.96 229 505 231.96 492.59 234.02 478.31 235.31 467.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 237.74 467.87 236.08 460.64 232.87 467.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 258.5 493.1 0 53 11 -normal_cram ",
		label=normal_cram,
		lp="258.5,495",
		pos="e,236.24,459.13 218.22,538.76 221.39,530.38 226.14,516.96 229,505 231.96,492.59 234.02,478.31 235.31,467.55"];
	bgzip	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 280.5 305.5 280.5 324.5 345.5 324.5 345.5 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 313 312.5 0 49 9 -bgzip VCF ",
		height=0.27778,
		label="bgzip VCF",
		pos="313,315",
		rects="280.5,305.5,345.5,324.5",
		width=0.90278];
	somaticfilter -> bgzip	[_draw_="c 7 -#000000 B 4 321.88 350.71 320.54 345.47 318.76 338.53 317.15 332.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 319.6 331.91 315.49 325.73 314.85 333.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 325.5 335.6 0 13 4 -file ",
		label=file,
		lp="325.5,337.5",
		pos="e,315.11,324.27 321.88,350.71 320.54,345.47 318.76,338.53 317.15,332.24"];
	cat_all	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 244.5 395.5 244.5 414.5 293.5 414.5 293.5 395.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 269 402.5 0 33 7 -cat_all ",
		height=0.27778,
		label=cat_all,
		pos="269,405",
		rects="244.5,395.5,293.5,414.5",
		width=0.68056];
	pindel_cat -> cat_all	[_draw_="c 7 -#000000 B 7 236.13 440.63 235.99 435.19 236.63 428.18 240 423 240.77 421.82 241.65 420.72 242.61 419.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 243.89 421.8 247.69 415.43 240.75 418.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 292.5 425.6 0 105 22 -chromosome_pindel_outs ",
		label=chromosome_pindel_outs,
		lp="292.5,427.5",
		pos="e,248.85,414.46 236.13,440.63 235.99,435.19 236.63,428.18 240,423 240.77,421.82 241.65,420.72 242.61,419.68"];
	cat_all -> somaticfilter	[_draw_="c 7 -#000000 B 7 281.35 395.54 285.13 392.87 289.28 389.87 293 387 298.05 383.11 303.41 378.71 308.23 374.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 309.5 376.79 313.24 370.39 306.32 373.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 352 380.6 0 98 21 -pindel_output_summary ",
		label=pindel_output_summary,
		lp="352,382.5",
		pos="e,314.39,369.4 281.35,395.54 285.13,392.87 289.28,389.87 293,387 298.05,383.11 303.41,378.71 308.23,374.65"];
	get_chromosome_list -> pindel_cat	[_draw_="c 7 -#000000 B 7 169.57 485.63 171.07 479.91 173.88 472.56 179 468 181 466.22 183.17 464.63 185.47 463.2 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 186.29 465.54 191.34 460.1 184 461.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 206 470.6 0 54 10 -chromosome ",
		label=chromosome,
		lp="206,472.5",
		pos="e,192.67,459.4 169.57,485.63 171.07,479.91 173.88,472.56 179,468 181,466.22 183.17,464.63 185.47,463.2"];
	remove_end_tags	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 187.5 170.5 187.5 189.5 316.5 189.5 316.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 252 177.5 0 113 20 -remove END INFO tags ",
		height=0.27778,
		label="remove END INFO tags",
		pos="252,180",
		rects="187.5,170.5,316.5,189.5",
		width=1.7917];
	region_filter -> remove_end_tags	[_draw_="c 7 -#000000 B 4 252 215.71 252 210.59 252 203.85 252 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 254.45 197.78 252 190.78 249.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 258.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="258.5,202.5",
		pos="e,252,189.27 252,215.71 252,210.59 252,203.85 252,197.67"];
	reindex	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 221 125.5 221 144.5 283 144.5 283 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 252 132.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="252,135",
		rects="221,125.5,283,144.5",
		width=0.86111];
	remove_end_tags -> reindex	[_draw_="c 7 -#000000 B 4 252 170.71 252 165.59 252 158.85 252 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 254.45 152.78 252 145.78 249.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 258.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="258.5,157.5",
		pos="e,252,144.27 252,170.71 252,165.59 252,158.85 252,152.67"];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 265 260.5 265 279.5 327 279.5 327 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 296 267.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="296,270",
		rects="265,260.5,327,279.5",
		width=0.86111];
	bgzip -> index	[_draw_="c 7 -#000000 B 4 309.72 305.71 307.61 300.36 304.78 293.22 302.25 286.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 304.68 286.28 299.82 280.67 300.12 288.08 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 312.5 290.6 0 13 3 -vcf ",
		label=vcf,
		lp="312.5,292.5",
		pos="e,299.27,279.27 309.72,305.71 307.61,300.36 304.78,293.22 302.25,286.81"];
	filter -> unfiltered_vcf	[_draw_="c 7 -#000000 B 4 247.95 80.71 245.34 75.36 241.85 68.22 238.72 61.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 240.97 60.84 235.7 55.63 236.57 62.99 ",
		pos="e,235.04,54.265 247.95,80.709 245.34,75.355 241.85,68.217 238.72,61.807"];
	filter -> filtered_vcf	[_draw_="c 7 -#000000 B 4 263.85 80.5 272.24 74.5 283.65 66.32 293.25 59.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 294.68 61.43 298.94 55.36 291.82 57.45 ",
		pos="e,300.17,54.478 263.85,80.505 272.24,74.497 283.65,66.32 293.25,59.435"];
	reindex -> filter	[_draw_="c 7 -#000000 B 4 252 125.71 252 120.59 252 113.85 252 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 254.45 107.78 252 100.78 249.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 258.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="258.5,112.5",
		pos="e,252,99.265 252,125.71 252,120.59 252,113.85 252,107.67"];
	index -> region_filter	[_draw_="c 7 -#000000 B 4 287.52 260.71 281.55 254.88 273.42 246.93 266.44 240.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 268.26 238.46 261.54 235.32 264.83 241.97 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 283.5 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="283.5,247.5",
		pos="e,260.46,234.27 287.52,260.71 281.55,254.88 273.42,246.93 266.44,240.12"];
}